BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0007.p (1059 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771307.1| transcription-repair coupling factor [Bradyrhiz... 1619 0.0 ref|YP_001237239.1| putative transcription repair coupling facto... 1347 0.0 ref|YP_001204358.1| putative transcription repair coupling facto... 943 0.0 ref|YP_002496892.1| DEAD/DEAH box helicase domain-containing pro... 637 e-180 ref|YP_001638770.1| DEAD/DEAH box helicase domain-containing pro... 622 e-175 >ref|NP_771307.1| transcription-repair coupling factor [Bradyrhizobium japonicum USDA 110] dbj|BAC49932.1| bll4667 [Bradyrhizobium japonicum USDA 110] Length = 1093 Score = 1619 bits (4192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 805/1063 (75%), Positives = 916/1063 (86%), Gaps = 7/1063 (0%) Query: 4 TKKARAAAGAKKKSKGSARSPISSSSPLGMLALHLLEQWKKSGRDGVVFLAESENRAERL 63 +KKA+A + KK KGS R+ ISSSSPLG +ALHLL QWK+SGR G+VFLAESENRAERL Sbjct: 30 SKKAKATKTSPKKGKGSQRATISSSSPLGSMALHLLAQWKQSGRSGIVFLAESENRAERL 89 Query: 64 GSVLHSLDPSLEVLVFPRLNTLPFDGLEPSREIAGRRSSVLRRLARSKKPVFLVSTAEAI 123 GSV+H+LDP+ EVLVFPRLNTLPFD LEPS E+AGRR+SVLRRLA+S+KP+FLVSTAEA+ Sbjct: 90 GSVIHALDPACEVLVFPRLNTLPFDQLEPSHELAGRRASVLRRLAKSRKPLFLVSTAEAV 149 Query: 124 MERLPLPASSARLSISLKVGAGYSEQELKDRLEALGYDLDEEADYPGSALFHGMTFEVFP 183 MERLP PAS +RLS+SLKVG +SE++L+ RLE LGYDL++E DYPG ALFHG TFE+FP Sbjct: 150 MERLPPPASLSRLSVSLKVGGAFSERDLRGRLEELGYDLEDEPDYPGGALFHGQTFEIFP 209 Query: 184 AGALGPFRIEHSGGVIRRIAGVDPDEHDVVFDAEELHIDPMSERIALEGKRVQRAALPDY 243 AGALGPFRIEHSG I RI DP EHD++F+ EL +DPMSER+A GKR +RA L DY Sbjct: 210 AGALGPFRIEHSGRAISRIVAFDPKEHDIIFETSELLVDPMSERLAFAGKRGKRATLFDY 269 Query: 244 CQRAHWIADAGVSGHADSWLSTIKEAAGRREAEREYLGPADWKRLAKRMSSLPRKAAFIA 303 C RA WIADAGV H D WLSTI+EAA R E EREY+G DWK+L++ M LPR A+F Sbjct: 270 CGRAKWIADAGVPLHVDGWLSTIEEAAPRAEREREYIGRRDWKQLSRGMKVLPRTASFQP 329 Query: 304 TPDFSKVASSRKALRAFVADTQRSGSRLLFVAAVEDDLRAMERMSGIKAERFADWNEAAK 363 P+FSK+ SSRKALRAFV +T+R+GSRL+ VAA EDDLR MERM G+KA+R +W+EA + Sbjct: 330 IPEFSKLTSSRKALRAFVEETRRAGSRLILVAAQEDDLRVMERMGGVKAQRCENWDEAVR 389 Query: 364 GRGGEGGLLADFDTGFIGSGRKPLVVVTATDVLGSRAHHPQPMARAWSSAFDHPDVPERG 423 GR GE LLAD D GF+ G+K LVVVTA+DVLGSRAHHPQPMARAWS+AFDH DVPE+G Sbjct: 390 GRSGEAALLADLDAGFVVPGKKSLVVVTASDVLGSRAHHPQPMARAWSAAFDHADVPEQG 449 Query: 424 AVVVHLQRGLAVLDGLQTLDMGKGSSREMIRLAFAGDDAVLVPPADLALIWPYAAELGKL 483 VVVHLQRGLAVLDGLQT++ G G+ REMIRL FAGD+AVLVPP DLAL+WPYA E GKL Sbjct: 450 TVVVHLQRGLAVLDGLQTVNTGGGALREMIRLVFAGDNAVLVPPPDLALMWPYATEPGKL 509 Query: 484 ALDRADGSTWWTRRTKAEQEIQTAAKAX-------RRRRAPKLVAPGPAYERFVARFPYF 536 ALD+ADGS+WW RRT+AE+EIQ A K RRRRA KLV PG AYE+FVARFPYF Sbjct: 510 ALDKADGSSWWARRTEAEREIQIAGKVLAKHISQRRRRRADKLVPPGSAYEKFVARFPYF 569 Query: 537 TTVDQAKAIRDVLDDLASGHPMDRVVCGDVGFGKTEVALRAAAAVALSGKQVAVVVPTTV 596 TTVDQAKAIRDVL+DLASGHPMDRV+CGDVGFGKTEVALRAAAAV LSGKQVA+ VPTTV Sbjct: 570 TTVDQAKAIRDVLEDLASGHPMDRVICGDVGFGKTEVALRAAAAVVLSGKQVAIAVPTTV 629 Query: 597 LARQHVATFRKRFAPLGIEVGSLSRATSSPEIKETKEGLRSGKMKVVVGTQAIASKDVKF 656 LARQHVATF+KRFAP IEVG+LSRATS E++ T+EGLRSG++KVVVGTQA+ KDVKF Sbjct: 630 LARQHVATFQKRFAPFDIEVGNLSRATSGAELRATREGLRSGRIKVVVGTQALGGKDVKF 689 Query: 657 AKLSLIIVDEEQHFGAAEKAKLSGLAKGAHTLWMSATPIPRTLAAGLAGFRELSVIASPP 716 L L+I+DEEQHFGAAEKA+LS LAK H L MSATPIPRTLAAGLAGFR+LSVIASPP Sbjct: 690 DDLGLVIIDEEQHFGAAEKARLSSLAKNVHVLMMSATPIPRTLAAGLAGFRDLSVIASPP 749 Query: 717 VHRLPVATKIAPLSDAAIAAALLREQRRHGQSFLICPRIQDLDPMLARVQSMAPELRIVC 776 VHRLPVAT+IAPLSDAAIA+ALLREQRRHGQSFLICPRIQDLDPMLARVQ++A +LRIVC Sbjct: 750 VHRLPVATRIAPLSDAAIASALLREQRRHGQSFLICPRIQDLDPMLARVQAVAGDLRIVC 809 Query: 777 LHGKLPADELDDRMMSFVEGEADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLR 836 LHG+L ADE+DDRMMSFVEG ADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLR Sbjct: 810 LHGRLAADEIDDRMMSFVEGRADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLR 869 Query: 837 GRVGRGGTRAFAYMLTESSSEQSGKRLAVLEEFSRPGAGFAISERDLDLRGAGDLLSERQ 896 GRVGR G RAFA++LTE++S QS KRLAVLEEFSRPGAGFAISERDLDLRGAGDL SE+Q Sbjct: 870 GRVGRSGIRAFAHLLTETNSGQSEKRLAVLEEFSRPGAGFAISERDLDLRGAGDLFSEQQ 929 Query: 897 SGHVQVFGPVLYSHLLKQASEKTNDRSADLWVPDLNLPLADLLPRSYVQSESVRLEIYGR 956 SGHVQVFGPVLYSHLLK ASEK ++ A +WVPDLNLP+AD+LP +YV SE VRLE+Y R Sbjct: 930 SGHVQVFGPVLYSHLLKMASEKVDEERAAVWVPDLNLPVADMLPETYVHSEPVRLELYAR 989 Query: 957 AARCWSEDDLEDLEEETSRRFGRLPSAGRDFFAAARLRIDCKRRGIVRLDVGPEAVAATF 1016 AARC SEDDL DLEEETSRRFG LP RDFFAAA+LR++CKRRGI+RLDVG AVAATF Sbjct: 990 AARCSSEDDLVDLEEETSRRFGPLPKVARDFFAAAKLRLECKRRGIIRLDVGLGAVAATF 1049 Query: 1017 LPGRLPKSKARSLERDGDRVFYSDNIHEPPFERIDDLLDILDE 1059 LPGRL KS+ +SL+RDGDRV Y + + PFER+++L ++LDE Sbjct: 1050 LPGRLRKSRGKSLQRDGDRVVYHSQMRDAPFERVEELFEVLDE 1092 >ref|YP_001237239.1| putative transcription repair coupling factor [Bradyrhizobium sp. BTAi1] gb|ABQ33333.1| putative transcription repair coupling factor [Bradyrhizobium sp. BTAi1] Length = 1159 Score = 1347 bits (3486), Expect = 0.0, Method: Compositional matrix adjust. Identities = 699/1052 (66%), Positives = 841/1052 (79%), Gaps = 9/1052 (0%) Query: 16 KSKGSARSPISSSSPLGMLALHLLEQWKKSGRDGVVFLAESENRAERLGSVLHSLDPSLE 75 K+ R+ ISSSSPLGMLAL+L QW+ SGRDGVVFLAE+E+RAERLGS++ ++P+ + Sbjct: 109 KASAPLRAGISSSSPLGMLALYLAAQWRASGRDGVVFLAENESRAERLGSIIPVIEPACD 168 Query: 76 VLVFPRLNTLPFDGLEPSREIAGRRSSVLRRLARSKKPVFLVSTAEAIMERLPLPASSAR 135 VLV+PRLNTLPFD LEPSR+IAGRRSSVLRRLA +KKP+ L++TAEA+ME LPLP + +R Sbjct: 169 VLVYPRLNTLPFDQLEPSRDIAGRRSSVLRRLAGTKKPILLITTAEAMMELLPLPTNWSR 228 Query: 136 LSISLKVGAGYSEQELKDRLEALGYDLDEEADYPGSALFHGMTFEVFPAGALGPFRIEHS 195 + L+ GA YSE +L+ RL+ALGYDLD+ DYPG LFHG TFE+FPAGALGP RIEHS Sbjct: 229 IGFQLRTGAIYSEADLEARLKALGYDLDDSPDYPGGVLFHGNTFEIFPAGALGPLRIEHS 288 Query: 196 GGVIRRIAGVDPDEHDVVFDAEELHIDPMSERIALEGKRVQRAALPDYCQRAHWIADAGV 255 GG IRRIA ++P + +V+ + EL IDPMSER+A + + +R++L DYC RA WIAD+ V Sbjct: 289 GGRIRRIAAINPMDQEVISETNELFIDPMSERLAFKDRARKRSSLFDYCSRAKWIADSAV 348 Query: 256 SGHADSWLSTIKEAAGRREAEREYLGPADWKRLAKRMSSLPRKAAFIATPDFSKVASSRK 315 HAD+WLSTI++AA R E +R YL +W + AK+++ L F ATP+F K +S RK Sbjct: 349 PRHADTWLSTIEDAAARGERDRAYLSRREWDQAAKKITLLAPTVPFRATPEFYKASSPRK 408 Query: 316 ALRAFVADTQRSGSRLLFVAAVEDDLRAMERMSGIKAERFADWNEA-AKGRGGEGGLLAD 374 ALRAF+ + QR +R++FVAAVE DLR M RMS KAE DW A A+GR + LLA Sbjct: 409 ALRAFIEEAQRGDARVVFVAAVESDLRLMARMSAAKAECVPDWAHATARGRR-QAALLAG 467 Query: 375 FDTGFIGSGRKPLVVVTATDVLGSRAHHPQPMARAWSSAFDHPDVPERGAVVVHLQRGLA 434 FD GFI G+KPLVV+TA DVLGSRAH PQP AW+ F+ D+PE G+VVVHLQRGLA Sbjct: 468 FDAGFIVPGKKPLVVITAADVLGSRAHQPQPTNWAWTPGFEAGDLPELGSVVVHLQRGLA 527 Query: 435 VLDGLQTLDMGKGSSREMIRLAFAGDDAVLVPPADLALIWPYAAELGKLALDRADGSTWW 494 L GL+++ G S+REM+RL FAG+DAVLVP A+LALIWPYAAELG +LD+ADGS+W Sbjct: 528 RLGGLRSMGSGDLSAREMVRLVFAGNDAVLVPLAELALIWPYAAELGNTSLDKADGSSWR 587 Query: 495 TRRTKAEQEIQTAAK-------AXRRRRAPKLVAPGPAYERFVARFPYFTTVDQAKAIRD 547 RR AE EI AK RRR APKLV AYE+FVARFPYFTT DQAKAIRD Sbjct: 588 PRRAAAETEIHVVAKELAKQMRQRRRRPAPKLVPRPAAYEKFVARFPYFTTPDQAKAIRD 647 Query: 548 VLDDLASGHPMDRVVCGDVGFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVATFRK 607 VLDDLASGHPMDR+VCGDVGFGKTEVALRAAAA L+GKQVA+VVPTTVLARQH TFRK Sbjct: 648 VLDDLASGHPMDRIVCGDVGFGKTEVALRAAAAAVLAGKQVAIVVPTTVLARQHFETFRK 707 Query: 608 RFAPLGIEVGSLSRATSSPEIKETKEGLRSGKMKVVVGTQAIASKDVKFAKLSLIIVDEE 667 RFAPLG +VG+LSR S+ + ++ +E L+SG++++VVGT ++ASK+VKFA L LII+DEE Sbjct: 708 RFAPLGFDVGNLSRVASAADARDVRERLKSGELRIVVGTLSLASKEVKFADLGLIIIDEE 767 Query: 668 QHFGAAEKAKLSGLAKGAHTLWMSATPIPRTLAAGLAGFRELSVIASPPVHRLPVATKIA 727 QHFGAAEKA LS L K H LWMSATPIPRTLAAGL G R+LSVIA+PPVHR+PVATK+A Sbjct: 768 QHFGAAEKAMLSNLNKNGHRLWMSATPIPRTLAAGLTGLRDLSVIATPPVHRVPVATKVA 827 Query: 728 PLSDAAIAAALLREQRRHGQSFLICPRIQDLDPMLARVQSMAPELRIVCLHGKLPADELD 787 PLSD AIAAAL+RE RR+GQSF+ICPRIQDLDP+LA+V ++ PELRI +HGKLP DE+D Sbjct: 828 PLSDIAIAAALVREHRRNGQSFVICPRIQDLDPLLAKVHALVPELRINTIHGKLPTDEID 887 Query: 788 DRMMSFVEGEADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRAF 847 +R+M FVEG DVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGG RAF Sbjct: 888 ERLMGFVEGRTDVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGIRAF 947 Query: 848 AYMLTESSSEQSGKRLAVLEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHVQVFGPVL 907 A+ LTE S++S KRL+VLEE SRPGAGFAIS RDLDLRG GDL S+RQSGH+QVFGP L Sbjct: 948 AHFLTEGGSDRSEKRLSVLEELSRPGAGFAISARDLDLRGGGDLRSDRQSGHMQVFGPTL 1007 Query: 908 YSHLLKQASEKTNDRSADLWVPDLNLPLADLLPRSYVQSESVRLEIYGRAARCWSEDDLE 967 Y HLL A E D + LW+P+LNLP+ +LLP SYVQSE+VRLEIY RAARC S+D+LE Sbjct: 1008 YGHLLTLALEGDRDGMSALWIPELNLPIPELLPASYVQSEAVRLEIYARAARCRSDDELE 1067 Query: 968 DLEEETSRRFGRLPSAGRDFFAAARLRIDCKRRGIVRLDVGPEAVAATFLPGRLPKSKAR 1027 +LE+ET RRFG+LPS +FFA ARLR++C+ RGI+RLDVGP+A+AAT L G++ KS +R Sbjct: 1068 ELEDETQRRFGKLPSEAGNFFAVARLRVNCRERGIMRLDVGPDAIAATMLAGKIRKSCSR 1127 Query: 1028 SLERDGDRVFYSDNIHEPPFERIDDLLDILDE 1059 L+R+GDRV Y EP R++ LD+LDE Sbjct: 1128 LLQREGDRVVYPGRSSEPALRRVELFLDLLDE 1159 >ref|YP_001204358.1| putative transcription repair coupling factor [Bradyrhizobium sp. ORS 278] emb|CAL76121.1| putative transcription repair coupling factor [Bradyrhizobium sp. ORS 278] Length = 1091 Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/1013 (50%), Positives = 674/1013 (66%), Gaps = 17/1013 (1%) Query: 19 GSARSP---ISSSSPLGMLALHLLEQWKKSGRDGVVFLAESENRAERLGSVLHSLDPSLE 75 SAR P +S +PLG++A HLL W++ GVVFL+ E RAER+ +VLH++DP Sbjct: 19 ASARPPRQVPASDAPLGLVASHLLRLWQQPSTRGVVFLSSDEARAERIAAVLHAMDPDCG 78 Query: 76 VLVFPRLNTLPFDGLEPSREIAGRRSSVLRRLARSKKPVFLVSTAEAIMERLPLPASSAR 135 VLV PR +T+PFD PSRE++GRR+ VLRRLA + L+ST EA++ +P Sbjct: 79 VLVLPRFDTVPFDDAAPSRELSGRRAHVLRRLAEHARHPLLISTVEAVLPLVPPQRCWTA 138 Query: 136 LSISLKVGAGYSEQELKDRLEALGYDLDEEADYPGSALFHGMTFEVFPAGALGPFRIEHS 195 S+ LK G + ++ L LGY DE D PGS LFHG T E+FPAGALGP RI H+ Sbjct: 139 ASLHLKAGQPIDLEGFRNSLAKLGYATDEPPDDPGSVLFHGQTTELFPAGALGPVRINHA 198 Query: 196 GGVIRRIAGVDPDEHDVVFDAEELHIDPMSERIALEGKRVQRAALPDYCQRAHWIADAGV 255 G+I I D + V AE L IDPMSER ++ G+ + L Y + I D+ V Sbjct: 199 DGMISDIHFFDLGHQNAVVAAETLVIDPMSER-SVGGEAL--VDLFTYLDGSEIIVDSTV 255 Query: 256 SGHADSWLSTIKEAAGRREA-EREYLGPADWKRLAKRMSSLPRKAAFIATPDFSKVASSR 314 HA+ L+ + E+ +E +R ++ + W+ + + LP K P F++ S+R Sbjct: 256 PDHAEMRLAALDESDVDKERRKRAFVDRSTWRHALRLATVLPAKGHSEPIPVFAQQRSAR 315 Query: 315 KALRAFVADTQRSGSRLLFVAAVEDDLRAMERMSGIKAERFADWNEAAKGRGGE-GGLLA 373 LR F+ ++ G+R+LF AA E DL+ MER++G KAER +W A + R G LL Sbjct: 316 ATLRRFIESARQRGARILFTAATERDLQGMERVAGEKAERRKNWAAATRARDGAITSLLI 375 Query: 374 DFDTGFIGSGRKPLVVVTATDVLGSRAHHPQPMARAWSSAFDHPDVPERGAVVVHLQRGL 433 D D GF R+PL+V+TA +VLGSRA H PMAR +A +P G+ ++HLQRGL Sbjct: 376 DLDRGFTTGTRRPLIVITAAEVLGSRARHLLPMAR--QAAVAGITIPVPGSAIIHLQRGL 433 Query: 434 AVLDGLQTLDMGKGSSREMIRLAFAGDDAVLVPPADLALIWPYAAELGKLALDRADGSTW 493 A+LDGL+ + S+R+MIRL FA D+A+LVP ADL LIWPYA + + LD ADG +W Sbjct: 434 ALLDGLELISAPNVSARDMIRLVFANDEAILVPIADLGLIWPYAGDPSGVKLDDADGRSW 493 Query: 494 WTRRTKAEQEIQTAA-------KAXRRRRAPKLVAPGPAYERFVARFPYFTTVDQAKAIR 546 R +AE EI A +A RR AP++VAP YERFVARFPY T DQA AI Sbjct: 494 AARCLRAEDEIDRTAVRLSDQIRARRRAEAPRIVAPAVEYERFVARFPYLVTPDQAAAIE 553 Query: 547 DVLDDLASGHPMDRVVCGDVGFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVATFR 606 DVL DL +GHPMDR+VCGDVGFGKTE+ALRAAAA +G+QVA++VPTTVLA QHV TF Sbjct: 554 DVLKDLGAGHPMDRIVCGDVGFGKTEIALRAAAATVFAGRQVALIVPTTVLAAQHVQTFV 613 Query: 607 KRFAPLGIEVGSLSRATSSPEIKETKEGLRSGKMKVVVGTQAIASKDVKFAKLSLIIVDE 666 KRFAP GI VG LSR +++ + + T+ L G +K+V+GT A+A+ DV+FA L L+IVDE Sbjct: 614 KRFAPFGISVGHLSRLSTTADARSTRRQLADGTLKLVIGTTALAADDVRFADLGLVIVDE 673 Query: 667 EQHFGAAEKAKLSGLAKGAHTLWMSATPIPRTLAAGLAGFRELSVIASPPVHRLPVATKI 726 EQHFGAA+KA+LS L G H L MSATPIPRT+A +AG R+LS+IA+PPV R PV TK+ Sbjct: 674 EQHFGAADKARLSALRAGVHALTMSATPIPRTMAGAMAGLRDLSIIATPPVRRRPVLTKV 733 Query: 727 APLSDAAIAAALLREQRRHGQSFLICPRIQDLDPMLARVQSMAPELRIVCLHGKLPADEL 786 PL DA ++ AL RE RR GQSF+ICPRI+DL PM R+ + PEL I +HG++PA E+ Sbjct: 734 EPLLDATLSMALRREHRRGGQSFVICPRIKDLAPMRERLSHLVPELGIAMIHGRMPAREI 793 Query: 787 DDRMMSFVEGEADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRA 846 D MM FV G+AD+LLATNIVE+GLDIPRANTI++ E FGL+QLHQLRGRVGRGG RA Sbjct: 794 DAEMMRFVAGKADILLATNIVENGLDIPRANTILISGAEHFGLSQLHQLRGRVGRGGIRA 853 Query: 847 FAYMLTESSSEQSGKRLAVLEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHVQVFGPV 906 +AY+L ++ + + KRL+ L+E GAGF IS RDLDLRGAGDLLSE+Q+GHVQVFGP Sbjct: 854 YAYLLADTPGDAAQKRLSALQELHFAGAGFQISARDLDLRGAGDLLSEQQAGHVQVFGPA 913 Query: 907 LYSHLLKQASEKTNDRSADLWVPDLNLPLADLLPRSYVQSESVRLEIYGRAARCWSEDDL 966 LY LL +A + R+A+ W+P+L + LP YVQ + RL++Y R A + D+ Sbjct: 914 LYQELLSRALQGRPHRAAEFWLPELRIDRPAFLPSDYVQDQVTRLDVYARLAHAETVADI 973 Query: 967 EDLEEETSRRFGRLPSAGRDFFAAARLRIDCKRRGIVRLDVGPEAVAATFLPG 1019 +D+E++ RFG P + A+AR+R+DC GI RLDVG E +AA P Sbjct: 974 DDIEDDMQLRFGHPPQEASNLIASARIRLDCHALGIARLDVGTEGIAARLRPA 1026 >ref|YP_002496892.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium nodulans ORS 2060] gb|ACL56589.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans ORS 2060] Length = 1091 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 448/1070 (41%), Positives = 586/1070 (54%), Gaps = 54/1070 (5%) Query: 20 SARSPISSSSPLGMLALHLLEQWKKSGRDGVVFLAESENRAERLGSVLHSLDPSLEVLVF 79 SA I+ + P G LA+ L+ + + +VFLA R + + ++L SL P+ +V V+ Sbjct: 13 SAAEIIAPAIPSGALAVALIGLAETAA--PLVFLARDGRRLDEIAAILRSLAPARQVAVY 70 Query: 80 PRLNTLPFDGLEPSREIAGRRSSVLRRLA-RSKKPVFLVSTAEAIMERLPLPASSARLSI 138 P + LP D PSR G R+ VLR LA + +P L+STA A+++R+P P A + Sbjct: 71 PEWDCLPGDRTSPSRGTMGARAGVLRWLADTAHRPDLLLSTAPALIQRVPPPEIWAEARV 130 Query: 139 SLKVGAGYSEQELKDRLEALGYDLDEEADYPGSALFHGMTFEVFPAGALGPFRIEHSGGV 198 +L+VG G+ L L LGY LDE D PG G T EVFPA A P RIEH G Sbjct: 131 ALRVGDGFEAASLTAALTRLGYILDERVDEPGEIAVRGRTLEVFPAAAPRPCRIEHEDGR 190 Query: 199 IRRIAGVDPDEHDVVFDAEELHIDPMSERI-------ALEGKRVQRAALPDYCQRAHWIA 251 I I DP V DA EL IDP +E I L Q LP + R + Sbjct: 191 ITAIRSYDPVTQRSVADAAELVIDPATELILGPDAPEPLAPFTGQEHRLPRFYPRLATVL 250 Query: 252 DA----------GVSGHADSWLSTIKEAAGRREAE----REYLGPADWKRLAKRMSSLPR 297 DA G A ++ + E + EA R YL P +W + R Sbjct: 251 DALPGARLVVEAGAEARAAAFFEQVTEGSAAGEAHPADARLYLTPPEWSDVLDRHRFASA 310 Query: 298 KA-AFIATPDFSKVASSRKALRAFVADTQRSGSRLLFVAAVEDDLRAMERMS----GIKA 352 A +A P F + A F+ + R+G R+L LR + R + G K Sbjct: 311 DAIGDVAVPAFVRERRPAAAFGRFLTERLRAGDRVLLTGP-PGPLRRLAREAVDQLGHKL 369 Query: 353 ERFADWNEAAKGRGGEGGLL-ADFDTGFIGSGRKP---LVVVTATDVLGSRAHHPQPMAR 408 R W G+ +L A GF R P + VV A D+LG RA Q Sbjct: 370 LRARSWACVLAAEPGQVAVLEAPIGAGF----RVPEAEVTVVAAADLLGLRAAPAQ-GDA 424 Query: 409 AWSSAFDHPDVPERGAVVVHLQRGLAVLDGLQTLDMGKGSSREMIRLAFAGDDAVLVPPA 468 A + F D+ RG V +H GL V +GL+ + G + E RL FA D +L P + Sbjct: 425 AAALPFGEIDL-HRGDVAIHEDHGLCVFEGLEPVGGPDGEAEEAARLRFADDAVLLAPLS 483 Query: 469 DLALIWPYAAELGKLALDRADGSTW-------WTRRTKAEQEIQTAAKAXRRRRAPKLVA 521 IW Y + ++LDR DG TW + + A+ RR RA L+ Sbjct: 484 QADRIWRYGSAAEAVSLDRLDGGTWEKRRATVAAAVAATARRMLDLAETRRRARAEPLIP 543 Query: 522 PGPAYERFVARFPYFTTVDQAKAIRDVLDDLASGHPMDRVVCGDVGFGKTEVALRAAAAV 581 P ERF A F + T DQA AI VL+DLA+G PMDR+VCGDVGFGKTEVALRAAAA Sbjct: 544 PDRQMERFCAGFGFSLTPDQAAAIDAVLEDLAAGRPMDRLVCGDVGFGKTEVALRAAAAA 603 Query: 582 ALSGKQVAVVVPTTVLARQHVATFRKRFAPLGIEVGSLSRATSSPEIKETKEGLRSGKMK 641 +G+QVA+ PTTVL RQH TFR+RFA GI LSR T E K K GL G ++ Sbjct: 604 LFAGRQVALAAPTTVLVRQHTETFRRRFARFGIVPAQLSRLTPPAEAKRVKAGLAEGSVR 663 Query: 642 VVVGTQAIASKDVKFAKLSLIIVDEEQHFGAAEKAKLSGLAKGAHTLWMSATPIPRTLAA 701 +V+GT A+A + V+ L L+I+DEEQ FG A+K +L A+GAH L ++ATPIPRTL Sbjct: 664 LVIGTHALAGRGVRMPDLGLVIIDEEQRFGTAQKERLRRAARGAHVLTLTATPIPRTLQT 723 Query: 702 GLAGFRELSVIASPPVHRLPVATKIAPLSDAAIAAALLREQRRHGQSFLICPRIQDLDPM 761 L G ++LSVIA+PPV R P+ T IAP + + AAL+RE RR GQSF++CPRI DL PM Sbjct: 724 ALVGLQDLSVIATPPVVRQPIRTVIAPFAPDTVRAALMREHRRGGQSFVVCPRIADLAPM 783 Query: 762 LARVQSMAPELRIVCLHGKLPADELDDRMMSFVEGEADVLLATNIVESGLDIPRANTIVV 821 A+++S+ PEL I HG+LP D +D+ M+ F GE DVLLATNI+ESGLD+PRANT++V Sbjct: 784 EAQLRSIVPELTIALAHGELPPDTMDEAMVRFAAGEGDVLLATNIIESGLDVPRANTMLV 843 Query: 822 CWPEKFGLAQLHQLRGRVGRGGTRAFAYMLTESSSE---QSGKRLAVLEEFSRPGAGFAI 878 PE+FGLAQLHQLRGRVGRG RA AY+LT+ + S KRL L R GAGFA+ Sbjct: 844 WHPERFGLAQLHQLRGRVGRGQRRAAAYLLTDPQARLPAASEKRLRTLAALDRLGAGFAL 903 Query: 879 SERDLDLRGAGDLLSERQSGHVQVFGPVLYSHLLKQASEKTNDRSADLWVPDLNLPLADL 938 S RDLDLRGAGDL E Q+GHV++ G LY LL++A + ++ L LA Sbjct: 904 SARDLDLRGAGDLFGEDQAGHVKLIGLDLYRDLLERAVRAARGEPDEAAPAEIRLGLAGR 963 Query: 939 LPRSYVQSESVRLEIYGRAARCWSEDDLEDLEEETSRRFGRLPSAGRDFFAAARLRIDCK 998 +P+ YV +RL + R AR + D+ E L +E RFG LP ARLR C+ Sbjct: 964 IPQEYVPEPELRLSLCARLARLRTADEAEALRDEIEDRFGPLPPEVDTLLTLARLRAACR 1023 Query: 999 RRGIVRLDVGPEAVAATFLPGRLPKSKARSLE---RDGDRVFYSDNIHEP 1045 GI RL GP+ +AA F PGR+ ++ AR+++ R GDR+ +P Sbjct: 1024 DLGIARLSAGPQGLAADFEPGRV-EAVARAVDGVVRRGDRLILHRPCADP 1072 >ref|YP_001638770.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium extorquens PA1] gb|ABY29699.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens PA1] Length = 1111 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 429/1057 (40%), Positives = 576/1057 (54%), Gaps = 69/1057 (6%) Query: 23 SPISSSSPL---GMLALHLLEQWKKSGRDGVVFLAESENRAERLGSVLHSLDPSLEVLVF 79 SP S +PL G LA+ LL + ++ R ++ +A R + + +VL +L P V V+ Sbjct: 16 SPDGSVAPLVPTGALAVALL-GFAQAARP-LIHVARDGRRLDEIAAVLLALAPERTVAVY 73 Query: 80 PRLNTLPFDGLEPSREIAGRRSSVLRRLARSK-KPVFLVSTAEAIMERLPLPASSARLSI 138 P + LPFD PSR + G R+ VLR L + +P +++TA A+++R+P P + I Sbjct: 74 PEWDCLPFDRASPSRGVMGARTGVLRWLTDDRAQPDIVLTTAPALLQRVPPPETWESAHI 133 Query: 139 SLKVGAGYSEQELKDRLEALGYDLDEEADYPGSALFHGMTFEVFPAGALGPFRIEHSGGV 198 L+VG ++L +L LGY LD+ D PG G T +VFPA A P R+EH G Sbjct: 134 ELRVGEPLDAEQLTAQLARLGYILDDRVDEPGEVAVRGRTIDVFPAAAPLPCRVEHDGAR 193 Query: 199 IRRIAGVDPDEHDVVFDAEELHIDPMSERI-------ALE-----GKRVQR-----AALP 241 I I DP + E L IDP +E I ALE R+ R + Sbjct: 194 ITAIRSYDPVSQRSRVETERLVIDPATEIILDPDSGLALEPFTGQEHRLARFYPALVTML 253 Query: 242 DYCQRAHWIADAGVSGHADSWLSTIKEA---------AGRREAERE--------YLGPAD 284 DY A + +AGV A ++ I E +G R +R YL P + Sbjct: 254 DYVPEARLVVEAGVEERAAAFFEQIAEGREAEGAMSPSGSRRDDRSQQTPAPDLYLAPKE 313 Query: 285 WKRLAKRMS---SLPRKAAFIATPDFSKVASSRKALRAFVADTQRSGSRLLFVAAVEDDL 341 W +L S + +A IA P F + A + + G R++ A + L Sbjct: 314 WAKLLDARSLAAATSAEAERIAGPVFVRERRPEAAFAKALRAALKVGERVVL-AGPKAPL 372 Query: 342 RAMERMSGIKAERFADWNEA-AKGRGGEGGLLADFDTGFIGSGRKP---LVVVTATDVLG 397 R + R + ER + A+ E G + + R P V+ A D+ G Sbjct: 373 RRLVRAAAAADERTVRLIDGWAEVEAAEPGAMLAIEMPVEAGFRVPQAGATVIAAADLFG 432 Query: 398 SRAHHPQPMARAWSSAFDHPDVPER----GAVVVHLQRGLAVLDGLQTLDMGKGSSREMI 453 P+A + E G V + GL + +GL+ + G+ + + Sbjct: 433 -------PLAAGAGRRAAVLPIGEVELRVGDVSIDRDHGLCLFEGLEAIRGGEEDEEDAL 485 Query: 454 RLAFAGDDAVLVPPADLALIWPYAAELGKLALDRADGSTWWTRRTKAEQEIQTAA----K 509 RL FA D ++VP + IW Y +E + LDR DG TW RR +AE + AA K Sbjct: 486 RLRFADDAILMVPVSQADRIWRYGSEAEAVTLDRLDGGTWARRRLEAEATLAKAARAMLK 545 Query: 510 AXRRRR---APKLVAPGPAYERFVARFPYFTTVDQAKAIRDVLDDLASGHPMDRVVCGDV 566 A + RR AP++V P ERF A F Y T DQA A+ + L DLA PMDR+VCGDV Sbjct: 546 AAQERREAHAPQIVPPEREMERFAAGFGYPLTGDQAGAVEETLADLAREMPMDRLVCGDV 605 Query: 567 GFGKTEVALRAAAAVALSGKQVAVVVPTTVLARQHVATFRKRFAPLGIEVGSLSRATSSP 626 GFGKTEVALRAAAA +G+Q+AV+ PTTVL RQHV TFR+RFA GIEV LSR S Sbjct: 606 GFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQHVETFRRRFARFGIEVAHLSRLVSPA 665 Query: 627 EIKETKEGLRSGKMKVVVGTQAIASKDVKFAKLSLIIVDEEQHFGAAEKAKLSGLAKGAH 686 E K K+GL G +++VVGTQA+A + V F L L I+DEEQ FGA KA L A AH Sbjct: 666 EAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLGLAIIDEEQRFGAKTKASLRKAAGDAH 725 Query: 687 TLWMSATPIPRTLAAGLAGFRELSVIASPPVHRLPVATKIAPLSDAAIAAALLREQRRHG 746 L +SATPIPRTL A + G + LSVIA+PP R P+ T IAP ++ +AAAL RE RR G Sbjct: 726 ILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAPFEESTLAAALRREHRRGG 785 Query: 747 QSFLICPRIQDLDPMLARVQSMAPELRIVCLHGKLPADELDDRMMSFVEGEADVLLATNI 806 QSF++CPRI+D+ PM R+ ++ P L +V HG++ E+DD M+ F +G DVLLAT+I Sbjct: 786 QSFVVCPRIEDIAPMAKRLHALVPGLDVVTAHGEMKPAEMDDAMVRFADGNGDVLLATSI 845 Query: 807 VESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRAFAYMLTESS---SEQSGKRL 863 +ESGLD+PRANT++V E+FGLAQLHQLRGRVGRG R Y+ S + KRL Sbjct: 846 IESGLDVPRANTMLVWDAERFGLAQLHQLRGRVGRGQRRGVVYLFGHPDKPLSPSTEKRL 905 Query: 864 AVLEEFSRPGAGFAISERDLDLRGAGDLLSERQSGHVQVFGPVLYSHLLKQASEKTNDRS 923 LE R GAGFAIS RDLDLRGAGDL+ + QSGHV++ G LY HLL+ A + Sbjct: 906 RTLEVLDRLGAGFAISARDLDLRGAGDLVGDDQSGHVKLVGLGLYQHLLQLALRAAKGEA 965 Query: 924 ADLWVPDLNLPLADLLPRSYVQSESVRLEIYGRAARCWSEDDLEDLEEETSRRFGRLPSA 983 A+ W P++ + L +P Y+ +RL +Y R R +E +++ L +E RFG LP + Sbjct: 966 AEDWSPEVRIGLNGRVPADYIPEPEIRLSLYTRLLRLRAEAEIDALRDEIEDRFGPLPES 1025 Query: 984 GRDFFAAARLRIDCKRRGIVRLDVGPEAVAATFLPGR 1020 F ARLRI C GIVRL GP+ +AA F P R Sbjct: 1026 VDALFTLARLRIGCLALGIVRLSGGPQGIAADFHPDR 1062