BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0002.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08631083.1| transcriptional regulator, TetR family [Brady... 181 3e-44 ref|ZP_08210102.1| regulatory protein, TetR [Novosphingobium nit... 150 1e-34 ref|YP_233841.1| regulatory protein, TetR [Pseudomonas syringae ... 123 2e-26 gb|EGH71971.1| regulatory protein, TetR [Pseudomonas syringae pv... 123 2e-26 ref|YP_469285.1| TetR family transcriptional regulator [Rhizobiu... 117 1e-24 >ref|ZP_08631083.1| transcriptional regulator, TetR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06184.1| transcriptional regulator, TetR family [Bradyrhizobiaceae bacterium SG-6C] Length = 196 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 96/191 (50%), Positives = 129/191 (67%), Gaps = 3/191 (1%) Query: 1 MGHSQADKARSRERILNEAATQIRGKGLDALSIGGLMQQVKLTHGGFYGHFASRSDLIAA 60 +GHSQADKARSRERIL AA Q+R GLD +SIG LM+ V LTHGGFYGHFASR +L+AA Sbjct: 6 VGHSQADKARSRERILEVAAAQLRELGLDGVSIGDLMKAVDLTHGGFYGHFASRDELVAA 65 Query: 61 ALEQALNAGEASAHAARDPDKPVNINTLARSYLSRAHRDAPKSGCAIGALISDVGRADAQ 120 AL++AL GEASA + + ++A SYLS+AHRD P SGCA+ AL DV R++ Q Sbjct: 66 ALDKALTDGEASAVRSSSAKGKRTLKSVANSYLSKAHRDNPDSGCAMAALSGDVARSNDQ 125 Query: 121 CRAVMEPHIESFIAKVAETFGDDDDSR--AIVAVSAMVGALAISRVLTDQKRSDAVLRTV 178 R +M H+ + + DD+ SR AI + MVGA+ +SRV+TD RSD +L+ Sbjct: 126 NREIMSKHLARYFDNMQNVM-DDNGSRELAISLMCMMVGAVTLSRVMTDASRSDEILQAA 184 Query: 179 RDAIVAMASDE 189 R +++ + ++ Sbjct: 185 RKSVLRLGGEK 195 >ref|ZP_08210102.1| regulatory protein, TetR [Novosphingobium nitrogenifigens DSM 19370] gb|EGD57796.1| regulatory protein, TetR [Novosphingobium nitrogenifigens DSM 19370] Length = 191 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/185 (49%), Positives = 121/185 (65%), Gaps = 2/185 (1%) Query: 1 MGHSQADKARSRERILNEAATQIRGKGLDALSIGGLMQQVKLTHGGFYGHFASRSDLIAA 60 MG S+ADKA+SRERIL AA QIR GLD+++IG LM+ LTHG FY HF SR+ LIAA Sbjct: 1 MGTSKADKAQSRERILAAAAQQIRSGGLDSIAIGDLMKTAGLTHGAFYAHFPSRAALIAA 60 Query: 61 ALEQALNAGEASAHAARDPDKPVNINTLARSYLSRAHRDAPKSGCAIGALISDVGRADAQ 120 AL++AL G +AH A P + + +YLS AHRDAP GCA+ AL ++ GR+D + Sbjct: 61 ALDRALADGSRNAHKACGPVETRTLAQFVEAYLSPAHRDAPHKGCAVPALAAEAGRSDEE 120 Query: 121 CRAVMEPHIESFIAKVAETFGDDDDSR--AIVAVSAMVGALAISRVLTDQKRSDAVLRTV 178 RA+M +E +I +A T G+ + +R AI SAMVGAL +SR+ + DAVL Sbjct: 121 TRAIMSRRMERYIDDLATTIGEGEAAREEAIATWSAMVGALMLSRLFAGEPLGDAVLDAT 180 Query: 179 RDAIV 183 R AI+ Sbjct: 181 RKAIL 185 >ref|YP_233841.1| regulatory protein, TetR [Pseudomonas syringae pv. syringae B728a] gb|AAY35803.1| transcriptional regulator, TetR family [Pseudomonas syringae pv. syringae B728a] Length = 211 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 4/179 (2%) Query: 1 MGHSQADKARSRERILNEAATQIRGKGLDALSIGGLMQQVKLTHGGFYGHFASRSDLIAA 60 MG S+ADKA S +RI+N AA QIR G++ + + LMQ+ LTHGGFY HF SR +L+ A Sbjct: 23 MGSSKADKATSHDRIINVAAAQIRRSGINGIGVADLMQEAGLTHGGFYRHFESRDELVTA 82 Query: 61 ALEQALNAGEASAHAARDPDKPVNINTLARSYLSRAHRDAPKSGCAIGALISDVGRADAQ 120 A+E+AL G A A + + YLS AHR P+ GCA+ L D+ R + + Sbjct: 83 AVERALAQGSARTVATCGQGGRRALEAIIDDYLSPAHRALPEGGCAVAGLAEDISRTNDR 142 Query: 121 CRAVMEPHIESFIAKVA----ETFGDDDDSRAIVAVSAMVGALAISRVLTDQKRSDAVL 175 R+ +E ++ +A T D R+ + +SAMVGALA++R + + SD +L Sbjct: 143 TRSAYARQVELYLELLAGLTPTTDAYGDRRRSCLLLSAMVGALAMARAIGEGGLSDEIL 201 >gb|EGH71971.1| regulatory protein, TetR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 189 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 8/181 (4%) Query: 1 MGHSQADKARSRERILNEAATQIRGKGLDALSIGGLMQQVKLTHGGFYGHFASRSDLIAA 60 MG S+ADKA S +RI+N AA QIR G++ + + LMQ+ LTHGGFY HF SR +L+ A Sbjct: 1 MGSSKADKATSHDRIINVAAAQIRRSGINGIGVADLMQEAGLTHGGFYRHFESRDELVTA 60 Query: 61 ALEQALNAGEASAHAARDPDKPVNINTLARSYLSRAHRDAPKSGCAIGALISDVGRADAQ 120 A+E+AL G A A + + YLS AHR P+ GCA+ L D+ R + + Sbjct: 61 AVERALAQGSARTVATCGQGGRRALEAIIDDYLSPAHRALPEGGCAVAGLAEDISRTNDR 120 Query: 121 CRAVMEPHIESFIAKVA------ETFGDDDDSRAIVAVSAMVGALAISRVLTDQKRSDAV 174 R+ +E ++ +A + +G D R+ + +SAMVGALA++R + + SD + Sbjct: 121 TRSAYARQVELYLELLAGLTPTTDAYG--DRRRSCLLLSAMVGALAMARAIGEGGLSDEI 178 Query: 175 L 175 L Sbjct: 179 L 179 >ref|YP_469285.1| TetR family transcriptional regulator [Rhizobium etli CFN 42] gb|ABC90558.1| probable transcriptional regulator protein, TetR family [Rhizobium etli CFN 42] Length = 191 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 109/187 (58%), Gaps = 6/187 (3%) Query: 1 MGHSQADKARSRERILNEAATQIRGKGLDALSIGGLMQQVKLTHGGFYGHFASRSDLIAA 60 MG SQ +K ++ E+I+ A+ ++R +GL+ + + LM++ LT GGFY HFASR +L+A Sbjct: 1 MGRSQLEKQKTHEKIVETASKRLREEGLEGIGVADLMKEAGLTVGGFYKHFASRDELVAE 60 Query: 61 ALEQALNA-GEASAHAARDPDKPVNINTLARSYLSRAHRDAPKSGCAIGALISDVGRADA 119 A+E A ++ G DP K + +A Y+S HRD P GC AL SD+ R+ Sbjct: 61 AIESAFDSWGRRLEAEGVDPAK-MTAADIADRYVSAYHRDNPGEGCPFAALTSDIARSGE 119 Query: 120 QCRAVMEPHIE-SFIAKVAETFGDDDDSR---AIVAVSAMVGALAISRVLTDQKRSDAVL 175 + R + +E +F A ++ G ++ R AI+A + M G + ++RV +D+ SD +L Sbjct: 120 KARRIATERLERNFEALASKATGANEGERRRKAIMAFAMMAGGVGLARVSSDEALSDEIL 179 Query: 176 RTVRDAI 182 T+RD + Sbjct: 180 ETIRDFV 186