BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0114.0011.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207588.1| putative ABC branched-chain amino transporte... 395 e-108 ref|YP_001242044.1| putative ABC branched-chain amino transporte... 394 e-107 ref|YP_002498639.1| ABC transporter substrate-binding protein [M... 393 e-107 ref|NP_773288.1| ABC transporter substrate-binding protein [Brad... 392 e-107 ref|YP_003979221.1| LivK, ABC-type branched-chain amino acid tra... 390 e-106 >ref|YP_001207588.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79371.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Bradyrhizobium sp. ORS 278] Length = 403 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 174/328 (53%), Positives = 237/328 (72%), Gaps = 1/328 (0%) Query: 4 ADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSSDLT 63 ADHQNK D+G IAR WY+ E VD I D S VA + LT++KNK + S GSSD+T Sbjct: 76 ADHQNKPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREKNKIHINSGGGSSDIT 135 Query: 64 GKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEKVGG 123 G CS N+V WTY+TYAL+N +A+ K G +W+F+T DYAFG AL DAA V++ GG Sbjct: 136 GTQCSPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFITADYAFGQALERDAANVVKEAGG 195 Query: 124 SIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGMAHT-QKLAA 182 + G+VRHPLNS DFSS++LQAQ+SKA V+ AN GGD N+++QA EFG+A + QK+ A Sbjct: 196 KVLGDVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQAAEFGLAQSGQKMIA 255 Query: 183 FLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYSAVM 242 LM+ +D+H++G+++ GL + AFYWD++D+TR F+ RF + PTM+QAGLYSA M Sbjct: 256 LLMEITDVHSLGIKSTSGLIVTDAFYWDMNDETRAFSKRFNEKVGHMPTMIQAGLYSATM 315 Query: 243 NYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAESKGA 302 +YLKA+E GTD+ P+V+ QM+ P++DFFA+N +R DG+++HDMYL +VK P ESKG Sbjct: 316 HYLKAIEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEESKGD 375 Query: 303 WDYEKLVQVIPGKEAFATPEESACPLLK 330 WD KL+ +PG EAF ++ CPL+K Sbjct: 376 WDLYKLIATVPGDEAFRPLDKGGCPLVK 403 >ref|YP_001242044.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38138.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 403 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 174/328 (53%), Positives = 237/328 (72%), Gaps = 1/328 (0%) Query: 4 ADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSSDLT 63 ADHQNK D+G IAR WY+ E VD I D S VA + LT++KNK + S GSSD+T Sbjct: 76 ADHQNKPDVGVNIARNWYDNEKVDAIFDVPTSSVALPISALTREKNKIHINSGGGSSDIT 135 Query: 64 GKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEKVGG 123 G CS N+V WTY+TYAL+N +A+ K G +W+F+T DYAFG AL DAA V++ GG Sbjct: 136 GSQCSPNTVHWTYDTYALSNVAGKAMVKRGEDTWFFITADYAFGQALERDAANVVKEAGG 195 Query: 124 SIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGMAHT-QKLAA 182 + G+VRHPLNS DFSS++LQAQ+SKA V+ AN GGD N+++QA EFG+A + QK+ A Sbjct: 196 KVLGDVRHPLNSSDFSSFVLQAQASKAKVVGLANAGGDTQNALKQAAEFGLAQSGQKMIA 255 Query: 183 FLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYSAVM 242 LM+ +D+H++G+++ GL + AFYWD++D+TR F+ RF + PTM+QAGLYSA M Sbjct: 256 LLMEITDVHSLGIKSTAGLIVTDAFYWDMNDETRAFSKRFNDKVGHMPTMIQAGLYSATM 315 Query: 243 NYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAESKGA 302 +YLKA+E GTD+ P+V+ QM+ P++DFFA+N +R DG+++HDMYL +VK P ESKG Sbjct: 316 HYLKAIEAIGTDEAPKVMEQMRATPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEESKGD 375 Query: 303 WDYEKLVQVIPGKEAFATPEESACPLLK 330 WD KL+ +PG EAF ++ CPL+K Sbjct: 376 WDLYKLIATVPGDEAFRPLDKGGCPLVK 403 >ref|YP_002498639.1| ABC transporter substrate-binding protein [Methylobacterium nodulans ORS 2060] gb|ACL58336.1| ABC transporter substrate-binding protein [Methylobacterium nodulans ORS 2060] Length = 406 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 181/332 (54%), Positives = 239/332 (71%), Gaps = 1/332 (0%) Query: 1 MVDADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSS 60 +V ADHQNK D+G+ I R+W E++ VDV+ D S VA AV LT+++++ L SSAGSS Sbjct: 71 VVSADHQNKPDVGSNIVRQWLERQQVDVVADVPTSSVALAVQTLTRERDRIFLNSSAGSS 130 Query: 61 DLTGKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEK 120 DL+G CS ++ WTY+TY+LAN T L GA +WYF+T DYAFGHAL D ++ V + Sbjct: 131 DLSGPACSPTAIHWTYDTYSLANGTAGPLVSQGADTWYFITADYAFGHALERDTSQAVTR 190 Query: 121 VGGSIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGM-AHTQK 179 GG ++G VRHP+ DFSS LLQAQ+S+A VIA A+ GD A + +QA EFG+ QK Sbjct: 191 NGGKVSGTVRHPMGMADFSSPLLQAQASQAKVIALADPVGDTATAAKQAGEFGIQVQGQK 250 Query: 180 LAAFLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYS 239 L L+ D+ AIGL AQG+ L T+FYWD DD+TR FA RF R K+ PT QAG+YS Sbjct: 251 LVGLLIDVVDLRAIGLPIAQGMLLTTSFYWDRDDETRAFAKRFFDRHKRMPTQFQAGVYS 310 Query: 240 AVMNYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAES 299 ++M+YLKAV+ +GTD+ V+A+M++MP++DFFARN +REDG+++HDMYL+QVKSPAES Sbjct: 311 SIMHYLKAVQAAGTDEAKAVVAKMREMPVNDFFARNGRLREDGRMVHDMYLMQVKSPAES 370 Query: 300 KGAWDYEKLVQVIPGKEAFATPEESACPLLKK 331 KG WD KLVQ IPG+ AF + CPL+ K Sbjct: 371 KGEWDLLKLVQTIPGERAFRPLDAGGCPLVAK 402 >ref|NP_773288.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51913.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 403 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 176/330 (53%), Positives = 236/330 (71%), Gaps = 1/330 (0%) Query: 1 MVDADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSS 60 +V ADHQNK D+G IAR WY+ + VD I D S VA + LT++KNK + S GSS Sbjct: 72 VVAADHQNKPDVGVNIARNWYDNDKVDAIFDVPTSSVALPISALTREKNKININSGGGSS 131 Query: 61 DLTGKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEK 120 D+TG CS N+V WTY+TYAL+N +A+ K G +WYFVT DYAFG AL+ DAA V++ Sbjct: 132 DITGVACSPNTVHWTYDTYALSNVAGKAMVKRGEDTWYFVTADYAFGMALQRDAANVVKE 191 Query: 121 VGGSIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGMAH-TQK 179 GG + GEVRHPLNS DFSS+LLQAQ+SKA V+A AN GGD N+++QA EFG+ QK Sbjct: 192 SGGKVLGEVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQAAEFGLTQGGQK 251 Query: 180 LAAFLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYS 239 + A L + +D H++G++A QGL + AFYWD++++TR F+ RF + PTM+QAGLYS Sbjct: 252 MIALLQEITDTHSLGIKATQGLIVTDAFYWDMNEETRAFSKRFNEKVGHMPTMIQAGLYS 311 Query: 240 AVMNYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAES 299 A M+YLKA+E TD+ P+V+ QM+ P++DFFA+N +R DG+++HDMYL +VK P ES Sbjct: 312 ATMHYLKAIEAIKTDEAPKVMEQMRSTPVNDFFAKNGKIRIDGRMVHDMYLFEVKKPEES 371 Query: 300 KGAWDYEKLVQVIPGKEAFATPEESACPLL 329 KG WD KL+ +PG EAF ++ CPL+ Sbjct: 372 KGEWDLYKLIATVPGDEAFRPLDKGGCPLV 401 >ref|YP_003979221.1| LivK, ABC-type branched-chain amino acid transport system, periplasmic component [Achromobacter xylosoxidans A8] gb|ADP16506.1| LivK, ABC-type branched-chain amino acid transport system, periplasmic component [Achromobacter xylosoxidans A8] Length = 405 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 178/331 (53%), Positives = 239/331 (72%) Query: 1 MVDADHQNKADIGAGIARRWYEQENVDVIVDFANSDVAFAVLELTKQKNKAMLVSSAGSS 60 M+ ADH NK D+ AG AR W ++E VDV+ + NS VA AV+ + ++K + +V+ AG++ Sbjct: 75 MLSADHLNKTDVAAGRAREWMDREQVDVVTELGNSAVALAVMNIAREKGRMTMVTGAGAT 134 Query: 61 DLTGKGCSANSVQWTYNTYALANSTVRALAKSGAKSWYFVTVDYAFGHALRNDAARTVEK 120 +TG+ CS N+VQW Y+TYALA L ++GAK WYFVT DYAFGH+L +D R V+ Sbjct: 135 RITGEDCSPNNVQWVYDTYALAKVGTLPLVEAGAKKWYFVTADYAFGHSLESDGMRFVKD 194 Query: 121 VGGSIAGEVRHPLNSMDFSSYLLQAQSSKADVIAFANTGGDLANSIRQAQEFGMAHTQKL 180 GG++AG VR+P DF+S+LL AQSSKAD +AFA+ G DL N I+QA+EFG++ QKL Sbjct: 195 GGGTVAGTVRYPFPGTDFASFLLAAQSSKADAVAFASAGADLQNEIKQAREFGLSERQKL 254 Query: 181 AAFLMQTSDIHAIGLQAAQGLQLATAFYWDLDDKTRDFAARFMARTKKRPTMVQAGLYSA 240 A LM +D+H +GL+AAQG+ A FYW++DD+TR F+ RF K PT +QAG YSA Sbjct: 255 VAMLMSITDVHGVGLEAAQGMTFAETFYWNMDDETRAFSQRFFKAAGKMPTALQAGQYSA 314 Query: 241 VMNYLKAVEKSGTDDGPRVIAQMKDMPIDDFFARNAFVREDGQLIHDMYLVQVKSPAESK 300 V+NYL+AVEKSG+D+ V+ ++ MPI D FARNA +REDG+LIHD Y+V+VKSP ES Sbjct: 315 VLNYLRAVEKSGSDNVDVVMRTLRGMPIRDAFARNARLREDGKLIHDTYVVEVKSPKEST 374 Query: 301 GAWDYEKLVQVIPGKEAFATPEESACPLLKK 331 AWDY K+V+ +PG +AF ES C L+KK Sbjct: 375 AAWDYYKIVKTVPGDQAFMPLAESQCKLVKK 405