BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0114.0010.p         (68 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002490203.1| Extracellular ligand-binding receptor [Methy...    70   1e-10
ref|ZP_01914818.1| ABC branched-chain amino acid family transpor...    69   2e-10
ref|YP_004230013.1| extracellular ligand-binding receptor [Burkh...    68   5e-10
ref|YP_293154.1| extracellular ligand-binding receptor [Ralstoni...    67   7e-10
ref|NP_773288.1| ABC transporter substrate-binding protein [Brad...    67   1e-09

>ref|YP_002490203.1| Extracellular ligand-binding receptor [Methylobacterium nodulans
          ORS 2060]
 gb|ACL63036.1| Extracellular ligand-binding receptor [Methylobacterium nodulans
          ORS 2060]
          Length = 406

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 37/44 (84%)

Query: 25 HAQISDDAVKIGVLTDQAGLYADAAGPGAVEAVRMAIADFGGKV 68
           AQISDD VKIG++TD +G+YADA GPG  EA+RMAIADFGG V
Sbjct: 24 EAQISDDTVKIGLITDMSGMYADADGPGGAEAIRMAIADFGGTV 67


>ref|ZP_01914818.1| ABC branched-chain amino acid family transporter, periplasmic
          ligand binding protein [Limnobacter sp. MED105]
 gb|EDM84134.1| ABC branched-chain amino acid family transporter, periplasmic
          ligand binding protein [Limnobacter sp. MED105]
          Length = 401

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 40/51 (78%)

Query: 18 AFAAAPSHAQISDDAVKIGVLTDQAGLYADAAGPGAVEAVRMAIADFGGKV 68
          A  A  + AQIS+D +KIGV+TD +GLYAD  GPG VEAV+MAIADFGG +
Sbjct: 15 AVVAGSAQAQISNDTIKIGVITDMSGLYADIDGPGGVEAVKMAIADFGGTL 65


>ref|YP_004230013.1| extracellular ligand-binding receptor [Burkholderia sp. CCGE1001]
 gb|ADX56953.1| Extracellular ligand-binding receptor [Burkholderia sp. CCGE1001]
          Length = 404

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 44/63 (69%), Gaps = 6/63 (9%)

Query: 12 AAILSVAFAAAP------SHAQISDDAVKIGVLTDQAGLYADAAGPGAVEAVRMAIADFG 65
          A I SV FA A       S AQ +DDAVKIG +TD +GLYAD  G G +EA+RMA+ADFG
Sbjct: 7  ARIASVCFAVAAGAAITMSSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRMAVADFG 66

Query: 66 GKV 68
          GKV
Sbjct: 67 GKV 69


>ref|YP_293154.1| extracellular ligand-binding receptor [Ralstonia eutropha JMP134]
 gb|AAZ65297.1| amino acid/amide ABC transporter substrate-binding protein, HAAT
          family [Ralstonia eutropha JMP134]
          Length = 409

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 44/60 (73%), Gaps = 3/60 (5%)

Query: 12 AAILSVAFAAAPSHAQ---ISDDAVKIGVLTDQAGLYADAAGPGAVEAVRMAIADFGGKV 68
          AA+LS A  A   +AQ   ISDD VK+GVLTD +G Y++ +GPG V AV+MAI DFGGKV
Sbjct: 10 AAVLSTAMVANFGYAQSGKISDDVVKLGVLTDLSGNYSEFSGPGTVTAVKMAIEDFGGKV 69


>ref|NP_773288.1| ABC transporter substrate-binding protein [Bradyrhizobium
          japonicum USDA 110]
 dbj|BAC51913.1| ABC transporter substrate-binding protein [Bradyrhizobium
          japonicum USDA 110]
          Length = 403

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 45/61 (73%)

Query: 8  VAASAAILSVAFAAAPSHAQISDDAVKIGVLTDQAGLYADAAGPGAVEAVRMAIADFGGK 67
          +AA+A  L++A     + AQISDD VKIGVLTD + LYADA G G++ AV MA+AD+G K
Sbjct: 5  IAATAVGLALAATCGTAQAQISDDVVKIGVLTDMSSLYADATGKGSLAAVEMAVADYGAK 64

Query: 68 V 68
          V
Sbjct: 65 V 65