BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0108.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766839.1| nitrile hydratase regulator [Bradyrhizobium jap... 315 3e-84 ref|YP_484560.1| nitrile hydratase regulator [Rhodopseudomonas p... 291 4e-77 ref|YP_004107508.1| nitrile hydratase regulator [Rhodopseudomona... 288 3e-76 ref|YP_568181.1| putative nitrile hydratase regulator [Rhodopseu... 285 3e-75 ref|YP_001243336.1| ABC transporter substrate-binding protein [B... 283 1e-74 >ref|NP_766839.1| nitrile hydratase regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC45464.1| bll0199 [Bradyrhizobium japonicum USDA 110] Length = 406 Score = 315 bits (806), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 150/193 (77%), Positives = 168/193 (87%) Query: 1 VKRYIKETGGQVVGEEFVPVGEDNHEAQLERIRAAKPDVVLISLIGTDSVTFNRAFAEAG 60 VKRYIKE GGQVVGEEFVPVGEDNHEA L RI AAKPD VLISLIGTDS+TFNRAFAEAG Sbjct: 214 VKRYIKEAGGQVVGEEFVPVGEDNHEAHLARIHAAKPDAVLISLIGTDSITFNRAFAEAG 273 Query: 61 LAATTLRYAGAMDETVMLGVGPDSTENLFCASGYFGCIDSRANDDFRTSYRAMFGEHAPP 120 LA +TLR AGAMDETV+LG+G D+TENLFCASGYF C+ SRAND+F + Y+AMFG HAPP Sbjct: 274 LATSTLRLAGAMDETVLLGIGADNTENLFCASGYFNCMASRANDEFLSGYQAMFGPHAPP 333 Query: 121 IGSVGQSNYEGMRFLEAAANQARSLSIGPLSAAAHNLVYSGARGTVTIRDGRAEMPIYLA 180 +GSVGQSNYEG+RFLE+ AN+A SL+ PL AA N VYS RG VTIRDGRAEMP+YLA Sbjct: 334 VGSVGQSNYEGLRFLESVANRAGSLAFRPLLKAARNTVYSAGRGPVTIRDGRAEMPMYLA 393 Query: 181 EADGLDFNVIRTI 193 EADGLDF +I+T+ Sbjct: 394 EADGLDFKLIKTL 406 >ref|YP_484560.1| nitrile hydratase regulator [Rhodopseudomonas palustris HaA2] gb|ABD05649.1| nitrile hydratase regulator [Rhodopseudomonas palustris HaA2] Length = 395 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 143/192 (74%), Positives = 161/192 (83%) Query: 1 VKRYIKETGGQVVGEEFVPVGEDNHEAQLERIRAAKPDVVLISLIGTDSVTFNRAFAEAG 60 VK YIK GGQVVGEEFVP+GED+HE L RIRAA+PDVVLISLIG DSVTFNRAFAE G Sbjct: 203 VKTYIKNAGGQVVGEEFVPLGEDDHERHLARIRAARPDVVLISLIGADSVTFNRAFAECG 262 Query: 61 LAATTLRYAGAMDETVMLGVGPDSTENLFCASGYFGCIDSRANDDFRTSYRAMFGEHAPP 120 LA TLR AGAMDETV+LG+G D+TENLFCASGYFGC DS AND FR + FG APP Sbjct: 263 LAGGTLRLAGAMDETVLLGIGADNTENLFCASGYFGCHDSSANDQFRAACLRAFGPTAPP 322 Query: 121 IGSVGQSNYEGMRFLEAAANQARSLSIGPLSAAAHNLVYSGARGTVTIRDGRAEMPIYLA 180 IGSVGQSNYEG+RFLEA A++A++L+ PL +AA N+VY+GARG VTIRDGRA M I+LA Sbjct: 323 IGSVGQSNYEGLRFLEAVADKAQTLAARPLLSAAKNVVYNGARGAVTIRDGRARMTIHLA 382 Query: 181 EADGLDFNVIRT 192 EADGLDF +IRT Sbjct: 383 EADGLDFKLIRT 394 >ref|YP_004107508.1| nitrile hydratase regulator [Rhodopseudomonas palustris DX-1] gb|ADU42775.1| nitrile hydratase regulator [Rhodopseudomonas palustris DX-1] Length = 394 Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 139/193 (72%), Positives = 160/193 (82%) Query: 1 VKRYIKETGGQVVGEEFVPVGEDNHEAQLERIRAAKPDVVLISLIGTDSVTFNRAFAEAG 60 VK YIK+ GGQVVGEEFVP+GED+HE L+RIRAAKPD VLISLIG DSVTFNR+FAEAG Sbjct: 202 VKTYIKDAGGQVVGEEFVPLGEDDHERHLDRIRAAKPDAVLISLIGNDSVTFNRSFAEAG 261 Query: 61 LAATTLRYAGAMDETVMLGVGPDSTENLFCASGYFGCIDSRANDDFRTSYRAMFGEHAPP 120 L+ LR AGAMDETV+LG+G D+TENLFCASGYFGC D AND FR SYR MFG APP Sbjct: 262 LSRHILRLAGAMDETVLLGIGADNTENLFCASGYFGCYDCAANDAFRDSYRRMFGPTAPP 321 Query: 121 IGSVGQSNYEGMRFLEAAANQARSLSIGPLSAAAHNLVYSGARGTVTIRDGRAEMPIYLA 180 IGSVGQSNYEG+RFL A++A++L+ PL AA N+VY GARG VT+RDGRA M ++LA Sbjct: 322 IGSVGQSNYEGLRFLATIADKAQTLAARPLLQAARNVVYRGARGEVTVRDGRARMTMHLA 381 Query: 181 EADGLDFNVIRTI 193 EADGLDF ++RT Sbjct: 382 EADGLDFKLLRTF 394 >ref|YP_568181.1| putative nitrile hydratase regulator [Rhodopseudomonas palustris BisB5] gb|ABE38280.1| putative nitrile hydratase regulator [Rhodopseudomonas palustris BisB5] Length = 395 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 140/191 (73%), Positives = 158/191 (82%) Query: 1 VKRYIKETGGQVVGEEFVPVGEDNHEAQLERIRAAKPDVVLISLIGTDSVTFNRAFAEAG 60 VK+YI + GGQVVGEEFVP+GED+HE L RIRAA+PDVVLISLIGTDSVTFNRAFAE G Sbjct: 203 VKKYINDAGGQVVGEEFVPLGEDDHERHLARIRAARPDVVLISLIGTDSVTFNRAFAECG 262 Query: 61 LAATTLRYAGAMDETVMLGVGPDSTENLFCASGYFGCIDSRANDDFRTSYRAMFGEHAPP 120 LA LR AGAMDETVMLG+G D+TEN+FCASGYFGC S AND+FR + FG APP Sbjct: 263 LAGRILRLAGAMDETVMLGIGADNTENMFCASGYFGCHASSANDEFRAACVRAFGPTAPP 322 Query: 121 IGSVGQSNYEGMRFLEAAANQARSLSIGPLSAAAHNLVYSGARGTVTIRDGRAEMPIYLA 180 IGSVGQSNYEG+RFLEA A++A++L PL AA N+VY GARG VTI DGRA MPI+LA Sbjct: 323 IGSVGQSNYEGLRFLEAVADKAQTLVARPLLQAAKNIVYHGARGPVTISDGRALMPIHLA 382 Query: 181 EADGLDFNVIR 191 EADGLDF +IR Sbjct: 383 EADGLDFRLIR 393 >ref|YP_001243336.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ39430.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 393 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 139/192 (72%), Positives = 160/192 (83%) Query: 2 KRYIKETGGQVVGEEFVPVGEDNHEAQLERIRAAKPDVVLISLIGTDSVTFNRAFAEAGL 61 K YI E GG VVGEEFVPVG D+HEA L RIRA +PDVVLISLIGTDS+TFNRAF E+GL Sbjct: 202 KIYIGEAGGHVVGEEFVPVGHDDHEAHLARIRATRPDVVLISLIGTDSITFNRAFGESGL 261 Query: 62 AATTLRYAGAMDETVMLGVGPDSTENLFCASGYFGCIDSRANDDFRTSYRAMFGEHAPPI 121 AATTLR AGA+DETV+LG+G D+TENL+ ASGYF CI SRAND+F + Y AMFG APP+ Sbjct: 262 AATTLRLAGAVDETVLLGIGADNTENLYSASGYFNCIGSRANDEFMSLYTAMFGVDAPPV 321 Query: 122 GSVGQSNYEGMRFLEAAANQARSLSIGPLSAAAHNLVYSGARGTVTIRDGRAEMPIYLAE 181 GSVGQSNYEG+RFL+AAA +A SLS+ PL+AA N+VYSGARG V IR GRA M ++LA Sbjct: 322 GSVGQSNYEGLRFLKAAAERAGSLSLHPLAAAGRNIVYSGARGEVAIRQGRAGMAMHLAA 381 Query: 182 ADGLDFNVIRTI 193 ADGLDF +IRT Sbjct: 382 ADGLDFRIIRTF 393