BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0107.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766839.1| nitrile hydratase regulator [Bradyrhizobium jap... 409 e-112 ref|YP_001202775.1| ABC transporter substrate-binding protein [B... 366 2e-99 ref|YP_001243336.1| ABC transporter substrate-binding protein [B... 360 9e-98 ref|YP_484560.1| nitrile hydratase regulator [Rhodopseudomonas p... 343 2e-92 ref|YP_004107508.1| nitrile hydratase regulator [Rhodopseudomona... 337 1e-90 >ref|NP_766839.1| nitrile hydratase regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC45464.1| bll0199 [Bradyrhizobium japonicum USDA 110] Length = 406 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/257 (77%), Positives = 225/257 (87%), Gaps = 1/257 (0%) Query: 1 VLSTVSFQAYGGMPVAPPLLFRNPSSCAADLALT-VKPGSSRRGGTDSKLRIGNFITFSG 59 V +TV+F A+GG + P LLFRN SS AAD L+ + +R G +KLRIGNF+TF+G Sbjct: 13 VRATVNFPAHGGPALPPSLLFRNLSSSAADFDLSPLDAHFMKRRGARNKLRIGNFLTFTG 72 Query: 60 APGIWGPISANSVMLAVAEINRRGGIRGREVELSMYDAGGPIEEVVRRAERAIAFDEIDV 119 +PGIWGP S NS MLAVAEIN+RGGI GRE+ELS+YD+GGPI+EVV+RAE+AIAFDE+D+ Sbjct: 73 SPGIWGPTSTNSAMLAVAEINKRGGILGRELELSIYDSGGPIDEVVQRAEQAIAFDEVDL 132 Query: 120 IMGSHISAVRLALRKVTAGRIPYVYTPVYEGGERTPGVMAIGETPRAESRPAIHWLTEVK 179 IMGSHISAVR+ALRKVT RIPY+YTPVYEGGERTPGVMAIGETPR +SRPAIHWL +VK Sbjct: 133 IMGSHISAVRVALRKVTGNRIPYIYTPVYEGGERTPGVMAIGETPRWQSRPAIHWLADVK 192 Query: 180 KAQRWYLIGSDYVWPWQSHRAVKRYIKEAGGHVVGEEFVPLGEDNHEPHLARIRAAKPDV 239 KA RWYLIGSDYVWPWQSHRAVKRYIKEAGG VVGEEFVP+GEDNHE HLARI AAKPD Sbjct: 193 KAARWYLIGSDYVWPWQSHRAVKRYIKEAGGQVVGEEFVPVGEDNHEAHLARIHAAKPDA 252 Query: 240 VLISLIGTDSITFNRAF 256 VLISLIGTDSITFNRAF Sbjct: 253 VLISLIGTDSITFNRAF 269 >ref|YP_001202775.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL74535.1| Putative ABC transporter, substrate binding protein [Bradyrhizobium sp. ORS 278] Length = 393 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 181/257 (70%), Positives = 211/257 (82%), Gaps = 2/257 (0%) Query: 1 VLSTVSFQAYGGMPVAPPLLFRNPSSCAADLALT-VKPGSSRRGGTDSKLRIGNFITFSG 59 +LST S A G + P LLFR+P +L + P R G ++LRIGNFITFSG Sbjct: 1 MLSTGSVTA-GRCSLPPSLLFRSPPRRNGLPSLAPLDPDRFERRGRHNRLRIGNFITFSG 59 Query: 60 APGIWGPISANSVMLAVAEINRRGGIRGREVELSMYDAGGPIEEVVRRAERAIAFDEIDV 119 +PGIWGP + NS +LAV+EINRRGGI GRE+ELS YD+GGP+++VV RA A+ FD+IDV Sbjct: 60 SPGIWGPAATNSALLAVSEINRRGGILGREIELSFYDSGGPVDDVVARARDALDFDDIDV 119 Query: 120 IMGSHISAVRLALRKVTAGRIPYVYTPVYEGGERTPGVMAIGETPRAESRPAIHWLTEVK 179 +MGSHISAVRL LR++T GRIPY+YTPVYEGGERTPGVMAIGETP +++RPAIHWL E K Sbjct: 120 VMGSHISAVRLGLRRLTRGRIPYIYTPVYEGGERTPGVMAIGETPHSQTRPAIHWLAENK 179 Query: 180 KAQRWYLIGSDYVWPWQSHRAVKRYIKEAGGHVVGEEFVPLGEDNHEPHLARIRAAKPDV 239 A+RWYLIGSDYVWPWQ+HR+ K YI EAGG VVGEEFVP+GED+HE HLARIRAAKPDV Sbjct: 180 GAKRWYLIGSDYVWPWQAHRSTKTYITEAGGQVVGEEFVPVGEDDHEAHLARIRAAKPDV 239 Query: 240 VLISLIGTDSITFNRAF 256 VLISLIGTDSITFNRAF Sbjct: 240 VLISLIGTDSITFNRAF 256 >ref|YP_001243336.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ39430.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 393 Score = 360 bits (925), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 182/258 (70%), Positives = 208/258 (80%), Gaps = 4/258 (1%) Query: 1 VLSTVSFQAYGGMPVAPP-LLFRNPSSCAADLALT-VKPGSSRRGGTDSKLRIGNFITFS 58 +LST S A G P PP LLFR+P A L P + R G ++LRIGNF+TFS Sbjct: 1 MLSTGSVTA--GRPGLPPSLLFRSPPRRGAVPFLAPFDPDRAERRGARNRLRIGNFLTFS 58 Query: 59 GAPGIWGPISANSVMLAVAEINRRGGIRGREVELSMYDAGGPIEEVVRRAERAIAFDEID 118 G+PGIWGP + NS +LAV+EINRRGGI GRE+ELS YD+GG +E+V RA A+ FD+ID Sbjct: 59 GSPGIWGPAATNSALLAVSEINRRGGILGREIELSFYDSGGAVEDVAARARDALDFDDID 118 Query: 119 VIMGSHISAVRLALRKVTAGRIPYVYTPVYEGGERTPGVMAIGETPRAESRPAIHWLTEV 178 V+MGSHISAVRLALR++T GRIPYVYTPVYEGGERTPGVMAIGETP +++RPAIHWL E Sbjct: 119 VVMGSHISAVRLALRRLTRGRIPYVYTPVYEGGERTPGVMAIGETPHSQTRPAIHWLAEN 178 Query: 179 KKAQRWYLIGSDYVWPWQSHRAVKRYIKEAGGHVVGEEFVPLGEDNHEPHLARIRAAKPD 238 K A+RWYLIGSDYVWPWQSH K YI EAGGHVVGEEFVP+G D+HE HLARIRA +PD Sbjct: 179 KGAKRWYLIGSDYVWPWQSHLQTKIYIGEAGGHVVGEEFVPVGHDDHEAHLARIRATRPD 238 Query: 239 VVLISLIGTDSITFNRAF 256 VVLISLIGTDSITFNRAF Sbjct: 239 VVLISLIGTDSITFNRAF 256 >ref|YP_484560.1| nitrile hydratase regulator [Rhodopseudomonas palustris HaA2] gb|ABD05649.1| nitrile hydratase regulator [Rhodopseudomonas palustris HaA2] Length = 395 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 167/217 (76%), Positives = 189/217 (87%) Query: 47 SKLRIGNFITFSGAPGIWGPISANSVMLAVAEINRRGGIRGREVELSMYDAGGPIEEVVR 106 +KLRI NF+TF GAPGIWGP S+N+ +LA AEIN+RGGI GRE+EL M DAGGPIE+V R Sbjct: 49 NKLRIANFVTFQGAPGIWGPASSNAALLAAAEINKRGGILGREIELVMCDAGGPIEDVAR 108 Query: 107 RAERAIAFDEIDVIMGSHISAVRLALRKVTAGRIPYVYTPVYEGGERTPGVMAIGETPRA 166 R +A+ FD++D++MGSHISAVR+ALRK GR+PY+YTPVYEGGERTPGVMAIGETPR Sbjct: 109 RVAQAVDFDDVDIVMGSHISAVRVALRKAIRGRVPYIYTPVYEGGERTPGVMAIGETPRW 168 Query: 167 ESRPAIHWLTEVKKAQRWYLIGSDYVWPWQSHRAVKRYIKEAGGHVVGEEFVPLGEDNHE 226 +SRPAI WLT+VKKAQRWYLIGSDYVWPW SHRAVK YIK AGG VVGEEFVPLGED+HE Sbjct: 169 QSRPAIDWLTQVKKAQRWYLIGSDYVWPWLSHRAVKTYIKNAGGQVVGEEFVPLGEDDHE 228 Query: 227 PHLARIRAAKPDVVLISLIGTDSITFNRAFFFXGRTG 263 HLARIRAA+PDVVLISLIG DS+TFNRAF G G Sbjct: 229 RHLARIRAARPDVVLISLIGADSVTFNRAFAECGLAG 265 >ref|YP_004107508.1| nitrile hydratase regulator [Rhodopseudomonas palustris DX-1] gb|ADU42775.1| nitrile hydratase regulator [Rhodopseudomonas palustris DX-1] Length = 394 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 155/210 (73%), Positives = 180/210 (85%) Query: 47 SKLRIGNFITFSGAPGIWGPISANSVMLAVAEINRRGGIRGREVELSMYDAGGPIEEVVR 106 +KLR+ NF+TF G+PG+WGP S N+ +LA AEIN+RGGI GRE+EL DAGGPIE+V R Sbjct: 48 NKLRVANFVTFQGSPGLWGPASTNAALLAAAEINKRGGILGREIELVFSDAGGPIEDVAR 107 Query: 107 RAERAIAFDEIDVIMGSHISAVRLALRKVTAGRIPYVYTPVYEGGERTPGVMAIGETPRA 166 R +A+ +D++D++MGSHISAVR+ALR GR+PY+YTPVYEGGERTPGVMAIGETPR Sbjct: 108 RVAQAVDYDDVDIVMGSHISAVRVALRNAIRGRVPYIYTPVYEGGERTPGVMAIGETPRW 167 Query: 167 ESRPAIHWLTEVKKAQRWYLIGSDYVWPWQSHRAVKRYIKEAGGHVVGEEFVPLGEDNHE 226 +SRPAI WL KKAQRWYLIGSDYVWPW SHRAVK YIK+AGG VVGEEFVPLGED+HE Sbjct: 168 QSRPAIDWLAREKKAQRWYLIGSDYVWPWLSHRAVKTYIKDAGGQVVGEEFVPLGEDDHE 227 Query: 227 PHLARIRAAKPDVVLISLIGTDSITFNRAF 256 HL RIRAAKPD VLISLIG DS+TFNR+F Sbjct: 228 RHLDRIRAAKPDAVLISLIGNDSVTFNRSF 257