BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0100.p (182 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001312735.1| TetR family transcriptional regulator [Sinor... 234 4e-60 ref|YP_003547137.1| TetR-family transcriptional regulator [Sphin... 188 3e-46 ref|YP_003546147.1| TetR-family transcriptional regulator [Sphin... 164 5e-39 ref|YP_002362734.1| TetR family transcriptional regulator [Methy... 130 7e-29 ref|ZP_05742220.1| transcriptional regulator, TetR family [Silic... 119 1e-25 >ref|YP_001312735.1| TetR family transcriptional regulator [Sinorhizobium medicae WSM419] gb|ABR62802.1| transcriptional regulator, TetR family [Sinorhizobium medicae WSM419] Length = 225 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 110/179 (61%), Positives = 134/179 (74%) Query: 1 VFFRSGFAGASVDEVIAKVGGSKRTIYSYFGNKEQLFATIVGEISQRAMAPLSESTFERN 60 VF SGF+GASVD +IAK GGSKRTIYSYFG K+QLF T++ EI+ R M P + Sbjct: 37 VFLSSGFSGASVDSIIAKAGGSKRTIYSYFGKKDQLFTTVIKEITGRVMGPFPAANIAGA 96 Query: 61 DLESTLYEVGRRYIDVVMSPEALQLYRTVVGEGARFPDLAKTFFAAGPGQASARLAAVLR 120 DL++ LY G Y+D VMSPEALQLYR VVGEGARFP +A+ FF GPG+ASA LA++L Sbjct: 97 DLDTVLYRSGSHYLDAVMSPEALQLYRIVVGEGARFPGVARAFFENGPGRASAALASILE 156 Query: 121 ENAKQWGLQQRDCERLAEHFLGMIRDDLHLQVVLGLRPPPTSAQAEAAVRSAVRVFMVG 179 E A WG+ +R +LAEHF+GMIRDDLHL+VVLGL PPT A+A ++VR AV VF+ G Sbjct: 157 EGADNWGIPKRSAAKLAEHFIGMIRDDLHLKVVLGLCDPPTPAEARSSVRDAVDVFVYG 215 >ref|YP_003547137.1| TetR-family transcriptional regulator [Sphingobium japonicum UT26S] dbj|BAI99114.1| TetR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 217 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 92/179 (51%), Positives = 122/179 (68%) Query: 1 VFFRSGFAGASVDEVIAKVGGSKRTIYSYFGNKEQLFATIVGEISQRAMAPLSESTFERN 60 VFF G+A S+D +I ++GGSKR IY+ FGNKE LF +V E + A++ LS FE Sbjct: 26 VFFEQGYAATSIDAIIERIGGSKRNIYNEFGNKEGLFTALVSESADTALSALSVGGFEGR 85 Query: 61 DLESTLYEVGRRYIDVVMSPEALQLYRTVVGEGARFPDLAKTFFAAGPGQASARLAAVLR 120 L L E GRR +++ MSP + +YR+++ E RFP+LAK FF GPG+AS RLA VL Sbjct: 86 SLNEVLLEFGRRLLEIYMSPGLIGVYRSIMPEALRFPELAKDFFDKGPGRASDRLAEVLA 145 Query: 121 ENAKQWGLQQRDCERLAEHFLGMIRDDLHLQVVLGLRPPPTSAQAEAAVRSAVRVFMVG 179 E + + DC A+HF+GM RD+LHL+VVLGLRPPP+ A+AEAAV SAV +F+ G Sbjct: 146 EARDRGEIDLDDCHAAADHFVGMFRDNLHLRVVLGLRPPPSPAEAEAAVTSAVGIFLHG 204 >ref|YP_003546147.1| TetR-family transcriptional regulator [Sphingobium japonicum UT26S] dbj|BAI97535.1| TetR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 211 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 111/179 (62%) Query: 1 VFFRSGFAGASVDEVIAKVGGSKRTIYSYFGNKEQLFATIVGEISQRAMAPLSESTFERN 60 +FF G+A +D++I + GGSKR IY+ FGNKE LFA IV E + +A+APL+ Sbjct: 24 IFFEQGYAATRIDDIIERTGGSKRNIYAEFGNKEGLFAAIVSEQAGQALAPLAIDNAAGQ 83 Query: 61 DLESTLYEVGRRYIDVVMSPEALQLYRTVVGEGARFPDLAKTFFAAGPGQASARLAAVLR 120 LE L + GRR ID+ MSP L +YR + E ARFP+L + F+ GPG+A A LA VLR Sbjct: 84 KLEEVLLDFGRRLIDIYMSPALLGVYRIAITECARFPELVRRFYDLGPGRAGATLADVLR 143 Query: 121 ENAKQWGLQQRDCERLAEHFLGMIRDDLHLQVVLGLRPPPTSAQAEAAVRSAVRVFMVG 179 + +Q DC +HF+ MIR ++HL V+LGLR PP + + V S V +F+ G Sbjct: 144 AAKARGEIQTDDCAVAGDHFVSMIRGNMHLHVMLGLRDPPDAQERRQFVASVVDLFLNG 202 >ref|YP_002362734.1| TetR family transcriptional regulator [Methylocella silvestris BL2] gb|ACK51372.1| transcriptional regulator, TetR family [Methylocella silvestris BL2] Length = 237 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 103/180 (57%) Query: 1 VFFRSGFAGASVDEVIAKVGGSKRTIYSYFGNKEQLFATIVGEISQRAMAPLSESTFERN 60 VF GFA A++DEVIA GGS++T+Y+ FG+K+ LF +V Q ++ Sbjct: 33 VFEDKGFAAATIDEVIALSGGSRQTLYTLFGDKQGLFEALVTGTCQSIFHGMTPEKLAPQ 92 Query: 61 DLESTLYEVGRRYIDVVMSPEALQLYRTVVGEGARFPDLAKTFFAAGPGQASARLAAVLR 120 + E+ L G RY+ ++ SP AL L R +V E R PD+A+ ++ GPG++ A LA R Sbjct: 93 EPEAALTGFGARYLGIITSPAALSLNRLMVAEAPRIPDIAERYWTLGPGRSRAFLAEFFR 152 Query: 121 ENAKQWGLQQRDCERLAEHFLGMIRDDLHLQVVLGLRPPPTSAQAEAAVRSAVRVFMVGA 180 L+ D E A+HFL M+ + + ++G+R PP +A+ EA V AVR F+ GA Sbjct: 153 RQGSAGKLRIDDAETAADHFLEMLSGTIRFKCLIGVRKPPDAAEIEAIVAKAVRQFLEGA 212 >ref|ZP_05742220.1| transcriptional regulator, TetR family [Silicibacter sp. TrichCH4B] gb|EEW57541.1| transcriptional regulator, TetR family [Silicibacter sp. TrichCH4B] Length = 202 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 2/177 (1%) Query: 1 VFFRSGFAGASVDEVIAKVGGSKRTIYSYFGNKEQLFATIVGEISQRAMAPLSESTFERN 60 +F + GF S+D+V A+VGGSKRT+Y +F NKE+LF ++ IS R + L + + Sbjct: 26 IFAKDGFGRTSMDQVHARVGGSKRTLYKHFPNKEKLFEAMIERISGRVIKALKPRSATES 85 Query: 61 DLESTLYEVGRRYIDVVMSPEALQLYRTVVGEGARFPDLAKTFFAAGPGQASARLAAVLR 120 LE+TL+ +G Y+ V++S + L LYR + E FP+L++ FF GP A+ LA L Sbjct: 86 -LEATLFRMGVDYLTVLLSEDGLALYRAMTSEAQHFPELSRDFFENGPEAATKSLAQFLS 144 Query: 121 ENAKQWGLQQRDCERLAEHFLGMIRDDLHLQVVLGLRPPPTSAQAEAAVRSAVRVFM 177 + L D E AE FLG +R +LHL VL R + V AVR F+ Sbjct: 145 LQQSKGSLPDIDPETAAELFLGAVRGNLHLSAVLAGR-SHSPEVIHNKVSDAVRAFL 200