BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0086.p (1048 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767393.1| hypothetical protein bll0753 [Bradyrhizobium ja... 1567 0.0 ref|YP_001236296.1| DNA helicase/exodeoxyribonuclease V subunit ... 1563 0.0 ref|YP_001202304.1| helicase-exonuclease type V family protein A... 1533 0.0 ref|YP_530280.1| hypothetical protein RPC_0386 [Rhodopseudomonas... 1427 0.0 ref|YP_575418.1| hypothetical protein Nham_0057 [Nitrobacter ham... 1401 0.0 >ref|NP_767393.1| hypothetical protein bll0753 [Bradyrhizobium japonicum USDA 110] dbj|BAC46018.1| bll0753 [Bradyrhizobium japonicum USDA 110] Length = 1048 Score = 1567 bits (4058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 794/1048 (75%), Positives = 883/1048 (84%) Query: 1 MRVFSVPVSAPFLRTVISALVDGRLVAGFEAQSDPARLANATLYLPPRRAGRLAREIFLD 60 MRVFSVP+S PFLRTV++AL+DGRLVAGFEA+ +PARLA+ TLYLP RRA R+ REIFLD Sbjct: 1 MRVFSVPISVPFLRTVVTALLDGRLVAGFEARREPARLADTTLYLPTRRAMRIVREIFLD 60 Query: 61 VLESDAAVLPRIVALGDIDEDELSFADQSEDVGGAAPLEIPPRLGELERRLTLAHLVAAW 120 +++DA VLPRIVALGDIDEDEL+FAD+ E GA PL+IPPRLGELERRLTLA LVAAW Sbjct: 61 EMKADAVVLPRIVALGDIDEDELAFADEGEQFSGATPLDIPPRLGELERRLTLAQLVAAW 120 Query: 121 AKTPVSAPLVVGGPASTLQLAGDLARLMDDMVTRGVDWRALDRLVPDQLDKYWQHSLDFL 180 AK PV +PLVVGGPASTL LAGDLARL+DDMVTRGVDW ALD LVPDQLD+YWQHSL+FL Sbjct: 121 AKGPVLSPLVVGGPASTLALAGDLARLIDDMVTRGVDWSALDGLVPDQLDRYWQHSLEFL 180 Query: 181 RIARDAWPSYLKEIGRIEPAARRDLLIEAEAARLTAHPTGPVIAAGSTGSMPATAKFLHA 240 RIAR AWP +L EI RIEPAARRDLLI AEA RLTAHP GPVIAAGSTGSMPATAKFLHA Sbjct: 181 RIARIAWPGHLAEINRIEPAARRDLLIAAEAKRLTAHPHGPVIAAGSTGSMPATAKFLHA 240 Query: 241 VAKLPNGAVVLPGLDTDLDEDSWDTIGGKRGDDGRFVTPPSSNHPQYAMHALLDRFGIRR 300 VA LP+GAVVLPGLDTDLDED+W TIGG R G+F P+SNHPQYAMHALL+RFGI+R Sbjct: 241 VASLPHGAVVLPGLDTDLDEDAWRTIGGVRDALGKFAEHPASNHPQYAMHALLERFGIKR 300 Query: 301 RDVESLAEPAPLGREVLVSETMRPSTATAQWHDRLERPEIVARISAGMTNLTVVEAPNPE 360 DVE L PA GR++L SE+MRPS T WHDRL++P++ A+I+ GMTNL VVEAPNPE Sbjct: 301 GDVELLQAPAEGGRDLLASESMRPSAKTEVWHDRLKQPDVAAKIAGGMTNLAVVEAPNPE 360 Query: 361 MEALAIAVAMREARHLGKSAALVTPDRALARRVMASLTRWKLEFDDSGGDALMETPAGVF 420 MEALAIA+AMREARHL KSAALVTPDRALARRVMA+LTRW L FDDSGGD LMET AGVF Sbjct: 361 MEALAIAIAMREARHLDKSAALVTPDRALARRVMAALTRWDLAFDDSGGDVLMETSAGVF 420 Query: 421 ARLTAEAAAKGLEPPTLLALLKHPLFRLGGPHGALRRAIEVLEIALLRGTRPQAGTGGLA 480 ARL AEAA KGLEPPTLLA+LKHPL RLG + AIE LE+A+LRGTRP AGT GL Sbjct: 421 ARLAAEAATKGLEPPTLLAMLKHPLCRLGRAPDTWKAAIEGLELAVLRGTRPPAGTAGLL 480 Query: 481 RDFARFRAELVKLHGGETSSLHAMEPRARLRDNELNQAEGLIARLQAALAPLEGMTSSKP 540 R+F RFR EL KL E S+LH EPRARL+ +L++ + LI L+ ALAP+E + SKP Sbjct: 481 REFNRFREELAKLWRSEVSALHKAEPRARLKAEDLDRVQALIDALRQALAPIESLAPSKP 540 Query: 541 YDFAELAARHREVLIALSGDRNGVAIVFEERAGASLASAFDELLAKQQPSGLMTPLADYP 600 YDFAELA RHRE++I LS D G+ + FEER G +LA AFD+LL SGL+ PL DYP Sbjct: 541 YDFAELAHRHREIMIELSRDEQGIPLAFEEREGLALAGAFDDLLRGGTTSGLIVPLPDYP 600 Query: 601 EVFQTAFADRMVRRPESARAQLNIFGQLEARLTESDRVILGGLVEGVWPPASRIDPWLSR 660 +VFQTAF DR VRR + A+L I+G LE+RL ++DR+I+GGL+EGVWPPA RIDPWLSR Sbjct: 601 DVFQTAFGDRAVRRRDKPGARLQIYGPLESRLMQADRIIVGGLIEGVWPPAPRIDPWLSR 660 Query: 661 PMRHELGLDLPERRIGLSAHDFAQLLGHDEVILTHAAKVGGAPAVASRFLHRLEAVAGEA 720 PMRHELGLDLPERRIGLSAHDFAQLLG DEVILTH+AK GGAPAVASRFLHRLEAVAG+ Sbjct: 661 PMRHELGLDLPERRIGLSAHDFAQLLGGDEVILTHSAKAGGAPAVASRFLHRLEAVAGDD 720 Query: 721 RWKAATSAGETYVQYAAELDRPDKVEPIPQPEPRPPREARPLKMSVTAIEDWLRDPYTIY 780 RWKAA AGE YV++A LD+PD+V PI QPEPRPPR RPLKMSVTAIEDWLRDPYTIY Sbjct: 721 RWKAAIRAGEKYVRFADRLDQPDEVRPIKQPEPRPPRATRPLKMSVTAIEDWLRDPYTIY 780 Query: 781 ARYILKLDPLDPVDMPLSAADRGSAIHEALGEFTQVYADALPPDTLRTLREIGAKYFAPL 840 A++IL+LD LDPVDMPLSAADRGSAIH+A+GEFT+ YA LP D R LR IG K+FAPL Sbjct: 781 AKHILRLDALDPVDMPLSAADRGSAIHDAIGEFTERYATRLPDDPARVLRAIGEKHFAPL 840 Query: 841 MERPEARALWWPRFQRIAAWFAEWEQARRGQIEAIKAEIRGEIGIPLDDARTFTLSARAD 900 MERPEARALWWPRFQRIA WF+EWE ARR +EAI AE RGEI I LD+ R+F LSARAD Sbjct: 841 MERPEARALWWPRFQRIARWFSEWETARRDVVEAITAETRGEISITLDNERSFRLSARAD 900 Query: 901 RIERRDDGSFAILDYKTGQPPTGKQVRMGLSPQLTLEAAILREGGFAEIPAGSSVGDLVY 960 RIERR G +AILDYKTGQPPTGKQVRMGLSPQLTLEAAILREGGF +I AGSSV LVY Sbjct: 901 RIERRQGGGYAILDYKTGQPPTGKQVRMGLSPQLTLEAAILREGGFPDIDAGSSVSQLVY 960 Query: 961 VRLSGNNPPGEQRSLELKIKTSDTPQPPDEAADSARRKLEALIRAFDDEQQAYTSLNLSM 1020 VRLSGNNPPGE+R LELK K D PQPPD AA AR KLEALIRAF+DE QAYTSLNL M Sbjct: 961 VRLSGNNPPGEERILELKYKQGDEPQPPDIAAAEARAKLEALIRAFEDENQAYTSLNLPM 1020 Query: 1021 WANRYGAYDDLARIKEWSAAGGLGIEEW 1048 W+NRYG YDDLARIKEWSAAGGLGIEEW Sbjct: 1021 WSNRYGTYDDLARIKEWSAAGGLGIEEW 1048 >ref|YP_001236296.1| DNA helicase/exodeoxyribonuclease V subunit B [Bradyrhizobium sp. BTAi1] gb|ABQ32390.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bradyrhizobium sp. BTAi1] Length = 1048 Score = 1563 bits (4046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 804/1048 (76%), Positives = 894/1048 (85%) Query: 1 MRVFSVPVSAPFLRTVISALVDGRLVAGFEAQSDPARLANATLYLPPRRAGRLAREIFLD 60 MRVF+VP+SAPFLR+VI+ALVDGRLV GFEA+SDPARLA ATLYLP RR+ R+ARE+FLD Sbjct: 1 MRVFTVPISAPFLRSVIAALVDGRLVDGFEARSDPARLATATLYLPTRRSLRVAREMFLD 60 Query: 61 VLESDAAVLPRIVALGDIDEDELSFADQSEDVGGAAPLEIPPRLGELERRLTLAHLVAAW 120 L++DAAVLPR+VALGDIDEDEL+FA+ + G APLEIP RL +L+RRLTLA LVAAW Sbjct: 61 ELKTDAAVLPRLVALGDIDEDELAFAEDRDAFLGPAPLEIPERLADLQRRLTLARLVAAW 120 Query: 121 AKTPVSAPLVVGGPASTLQLAGDLARLMDDMVTRGVDWRALDRLVPDQLDKYWQHSLDFL 180 AKTPVSAPLV+GGPASTL LAGDLARL+DDMVTRGV W ALD LVPDQLDKYWQ+SL+FL Sbjct: 121 AKTPVSAPLVIGGPASTLALAGDLARLIDDMVTRGVSWEALDALVPDQLDKYWQYSLEFL 180 Query: 181 RIARDAWPSYLKEIGRIEPAARRDLLIEAEAARLTAHPTGPVIAAGSTGSMPATAKFLHA 240 RIAR AWP+YL+EI RIEPAARRDLLI AEAARL+AHP GPVIAAGSTGSMPATAKFL A Sbjct: 181 RIARTAWPAYLQEIERIEPAARRDLLIAAEAARLSAHPDGPVIAAGSTGSMPATAKFLLA 240 Query: 241 VAKLPNGAVVLPGLDTDLDEDSWDTIGGKRGDDGRFVTPPSSNHPQYAMHALLDRFGIRR 300 VAKLP+GAVVLPGLDTDLDE +W++IGG + GR +TPP+ NHPQYAMH LL RFG+ R Sbjct: 241 VAKLPHGAVVLPGLDTDLDEAAWNSIGGAKDRAGRVITPPAVNHPQYAMHLLLKRFGLER 300 Query: 301 RDVESLAEPAPLGREVLVSETMRPSTATAQWHDRLERPEIVARISAGMTNLTVVEAPNPE 360 RDV LA P GREVL+SE MRPS ATA WH+RL + ++ A I+ M NL VV APNPE Sbjct: 301 RDVIRLAHPGRGGREVLISEAMRPSEATAVWHERLRQLDVAANIAEAMDNLAVVAAPNPE 360 Query: 361 MEALAIAVAMREARHLGKSAALVTPDRALARRVMASLTRWKLEFDDSGGDALMETPAGVF 420 MEALAIA+AMREARHLGKSAALVTPDR LARRVMA+LTRW L FDDSGGDAL+ETPAG+F Sbjct: 361 MEALAIAIAMREARHLGKSAALVTPDRTLARRVMAALTRWHLTFDDSGGDALLETPAGIF 420 Query: 421 ARLTAEAAAKGLEPPTLLALLKHPLFRLGGPHGALRRAIEVLEIALLRGTRPQAGTGGLA 480 ARL AEAAA+ LEPPTLLALLKHPL RLG AIE LE+A+LRGTRPQAGT GLA Sbjct: 421 ARLAAEAAARSLEPPTLLALLKHPLCRLGRAAKGWTSAIETLELAMLRGTRPQAGTSGLA 480 Query: 481 RDFARFRAELVKLHGGETSSLHAMEPRARLRDNELNQAEGLIARLQAALAPLEGMTSSKP 540 RDFARFR E +LH GE SSLH EPRARL +L++A LIA+LQ ALAPLE + S +P Sbjct: 481 RDFARFRDEHTRLHQGEASSLHRAEPRARLSPEQLDRAGALIAQLQTALAPLENLASPRP 540 Query: 541 YDFAELAARHREVLIALSGDRNGVAIVFEERAGASLASAFDELLAKQQPSGLMTPLADYP 600 DFAELAARHREVLIALS D G++ F +R GA+LA FD+LLA + GLM PL+DYP Sbjct: 541 QDFAELAARHREVLIALSTDDVGLSTAFTDRDGAALARCFDDLLASGERCGLMAPLSDYP 600 Query: 601 EVFQTAFADRMVRRPESARAQLNIFGQLEARLTESDRVILGGLVEGVWPPASRIDPWLSR 660 ++F TAF+DR VRRPE AQL I+G LEARL ++DR+I+GGL+EGVWPPA RIDPWLSR Sbjct: 601 DLFHTAFSDRAVRRPERHGAQLQIYGPLEARLMQADRMIIGGLIEGVWPPAPRIDPWLSR 660 Query: 661 PMRHELGLDLPERRIGLSAHDFAQLLGHDEVILTHAAKVGGAPAVASRFLHRLEAVAGEA 720 PMRH+LGLDLPERRIGLSAHDFAQLLG EVILTHAAK GGAPAVASRFLHRLEAVAG Sbjct: 661 PMRHQLGLDLPERRIGLSAHDFAQLLGAPEVILTHAAKSGGAPAVASRFLHRLEAVAGAD 720 Query: 721 RWKAATSAGETYVQYAAELDRPDKVEPIPQPEPRPPREARPLKMSVTAIEDWLRDPYTIY 780 RWKAAT+ GETYV+YA LD+P +V+P+ QP P+PP ARPL+MSVTAIEDWLRDPYTI+ Sbjct: 721 RWKAATARGETYVRYAEVLDQPPEVKPVEQPAPKPPLAARPLRMSVTAIEDWLRDPYTIF 780 Query: 781 ARYILKLDPLDPVDMPLSAADRGSAIHEALGEFTQVYADALPPDTLRTLREIGAKYFAPL 840 ARYILKLDPLDPVDMPLSAADRGSAIHEA+GEFTQ YADALPPD LR+IG K+FAPL Sbjct: 781 ARYILKLDPLDPVDMPLSAADRGSAIHEAIGEFTQTYADALPPDPAPVLRQIGEKHFAPL 840 Query: 841 MERPEARALWWPRFQRIAAWFAEWEQARRGQIEAIKAEIRGEIGIPLDDARTFTLSARAD 900 MERPEARALWWPRFQRIA WFA WE ARR QI AI AEIRGEIGIPL RTF LSARAD Sbjct: 841 MERPEARALWWPRFQRIAGWFAAWESARREQIGAITAEIRGEIGIPLSPDRTFILSARAD 900 Query: 901 RIERRDDGSFAILDYKTGQPPTGKQVRMGLSPQLTLEAAILREGGFAEIPAGSSVGDLVY 960 RIERR +G++AILDYKTGQPPT KQVRMGLSPQLTLEAAILREGGF IPAGS + LVY Sbjct: 901 RIERRAEGTYAILDYKTGQPPTAKQVRMGLSPQLTLEAAILREGGFDGIPAGSLISQLVY 960 Query: 961 VRLSGNNPPGEQRSLELKIKTSDTPQPPDEAADSARRKLEALIRAFDDEQQAYTSLNLSM 1020 +RLSGNNPPGE+R LELKI SD PQ PD+AA AR KLEALIR+F+D Q YTSLNLSM Sbjct: 961 IRLSGNNPPGEERILELKINKSDPPQHPDQAAQEARAKLEALIRSFEDINQGYTSLNLSM 1020 Query: 1021 WANRYGAYDDLARIKEWSAAGGLGIEEW 1048 WANRYGAYDDLARIKEWSAAGGLG+EEW Sbjct: 1021 WANRYGAYDDLARIKEWSAAGGLGVEEW 1048 >ref|YP_001202304.1| helicase-exonuclease type V family protein AddB subunit [Bradyrhizobium sp. ORS 278] emb|CAL74054.1| putative helicase-exonuclease type V protein family, addB subunit [Bradyrhizobium sp. ORS 278] Length = 1048 Score = 1533 bits (3970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 803/1048 (76%), Positives = 896/1048 (85%) Query: 1 MRVFSVPVSAPFLRTVISALVDGRLVAGFEAQSDPARLANATLYLPPRRAGRLAREIFLD 60 MRVF+VP+SAPFLR+VI+ALVDGRLV GFEA+SDPARLA ATLYLP RR+ R+ARE+FLD Sbjct: 1 MRVFTVPISAPFLRSVIAALVDGRLVDGFEARSDPARLATATLYLPTRRSLRVAREMFLD 60 Query: 61 VLESDAAVLPRIVALGDIDEDELSFADQSEDVGGAAPLEIPPRLGELERRLTLAHLVAAW 120 L +DAAVLPR+VALGDIDEDEL+FA+ + G APLE+P RL +L+RRLTLA LVAAW Sbjct: 61 ELRTDAAVLPRLVALGDIDEDELAFAEDRDAFLGPAPLELPERLDDLQRRLTLARLVAAW 120 Query: 121 AKTPVSAPLVVGGPASTLQLAGDLARLMDDMVTRGVDWRALDRLVPDQLDKYWQHSLDFL 180 AKTPVSAPLV+GGPASTL LAGDLARL+DD+VTRGV W ALD+LVPDQLDKYWQ SL+FL Sbjct: 121 AKTPVSAPLVIGGPASTLALAGDLARLIDDIVTRGVSWDALDQLVPDQLDKYWQFSLEFL 180 Query: 181 RIARDAWPSYLKEIGRIEPAARRDLLIEAEAARLTAHPTGPVIAAGSTGSMPATAKFLHA 240 RIAR AWP+YL+EI RIEPAARRDLLI AEAARL+AHP GPVIAAGSTGSMPATAKFL A Sbjct: 181 RIARTAWPAYLQEIERIEPAARRDLLIAAEAARLSAHPDGPVIAAGSTGSMPATAKFLLA 240 Query: 241 VAKLPNGAVVLPGLDTDLDEDSWDTIGGKRGDDGRFVTPPSSNHPQYAMHALLDRFGIRR 300 VAKLP+GAVVLPGLDTDLDE +W +IGG + GR +TPP+ NHPQYAMH LL RFG+ R Sbjct: 241 VAKLPHGAVVLPGLDTDLDEAAWSSIGGAKDRSGRVITPPAVNHPQYAMHLLLRRFGLER 300 Query: 301 RDVESLAEPAPLGREVLVSETMRPSTATAQWHDRLERPEIVARISAGMTNLTVVEAPNPE 360 RDV LA P GREVL+SE MRPS ATA WH+RL + +I A I+ M NL+VV APNPE Sbjct: 301 RDVLRLAPPGRGGREVLISEAMRPSEATAIWHERLRQFDIAANIAEAMDNLSVVAAPNPE 360 Query: 361 MEALAIAVAMREARHLGKSAALVTPDRALARRVMASLTRWKLEFDDSGGDALMETPAGVF 420 MEALAIA+AMREARHLGKSAALVTPDRALARRVMA+LTRW L FDDSGGDAL+ETPAG+F Sbjct: 361 MEALAIAIAMREARHLGKSAALVTPDRALARRVMAALTRWHLTFDDSGGDALLETPAGIF 420 Query: 421 ARLTAEAAAKGLEPPTLLALLKHPLFRLGGPHGALRRAIEVLEIALLRGTRPQAGTGGLA 480 ARL AEAAA+GLEPPTLLALLKHPL RLG + AIE LE+ALLRGTRPQAGTGGLA Sbjct: 421 ARLAAEAAARGLEPPTLLALLKHPLCRLGRNAYGWKHAIETLELALLRGTRPQAGTGGLA 480 Query: 481 RDFARFRAELVKLHGGETSSLHAMEPRARLRDNELNQAEGLIARLQAALAPLEGMTSSKP 540 RDFARFR E KLH GE SSLH EPRARL+ ++L+QA LIA+LQ ALAPLE + S +P Sbjct: 481 RDFARFRDEHAKLHQGEASSLHRAEPRARLKPDQLDQAAALIAQLQTALAPLENLASPRP 540 Query: 541 YDFAELAARHREVLIALSGDRNGVAIVFEERAGASLASAFDELLAKQQPSGLMTPLADYP 600 DFAELAARHREVLIALS D G+ F +R GA+LA FD+LLA + GLM PL+DYP Sbjct: 541 QDFAELAARHREVLIALSTDDVGLGTAFTDRDGAALARCFDDLLASGERCGLMAPLSDYP 600 Query: 601 EVFQTAFADRMVRRPESARAQLNIFGQLEARLTESDRVILGGLVEGVWPPASRIDPWLSR 660 ++F TAF+DR VRRPE AQL I+G LEARL ++DR+I+GGLVEG+WPPA RIDPWLSR Sbjct: 601 DLFHTAFSDRAVRRPERHGAQLQIYGPLEARLMQTDRMIIGGLVEGIWPPAPRIDPWLSR 660 Query: 661 PMRHELGLDLPERRIGLSAHDFAQLLGHDEVILTHAAKVGGAPAVASRFLHRLEAVAGEA 720 PMRH+LGLDLPERRIGLSAHDFAQLLG EVILTHAAK GGAPAVASRFLHRL+AVAG+A Sbjct: 661 PMRHQLGLDLPERRIGLSAHDFAQLLGAPEVILTHAAKSGGAPAVASRFLHRLQAVAGDA 720 Query: 721 RWKAATSAGETYVQYAAELDRPDKVEPIPQPEPRPPREARPLKMSVTAIEDWLRDPYTIY 780 +WKAAT+ GETYV+YA LD+P +V+PIPQP P+PP EARPL+MSVTAIEDWLRDPYTI+ Sbjct: 721 QWKAATARGETYVRYAEVLDQPREVKPIPQPAPKPPLEARPLRMSVTAIEDWLRDPYTIF 780 Query: 781 ARYILKLDPLDPVDMPLSAADRGSAIHEALGEFTQVYADALPPDTLRTLREIGAKYFAPL 840 ARYIL+LDPLDPVDMPLSAADRGSAIHEA+GEFTQ +A LP LR IG K+FAPL Sbjct: 781 ARYILRLDPLDPVDMPLSAADRGSAIHEAIGEFTQTFAKELPLHPAHALRVIGEKHFAPL 840 Query: 841 MERPEARALWWPRFQRIAAWFAEWEQARRGQIEAIKAEIRGEIGIPLDDARTFTLSARAD 900 MERPEARALWWPRFQRIA WFA WE ARR I AI AEIRGEIGIPL RTF LSARAD Sbjct: 841 MERPEARALWWPRFQRIAGWFAAWETARREHIGAITAEIRGEIGIPLGKDRTFMLSARAD 900 Query: 901 RIERRDDGSFAILDYKTGQPPTGKQVRMGLSPQLTLEAAILREGGFAEIPAGSSVGDLVY 960 RIE+R +G++AILDYKTGQPPT KQVRMGLSPQLTLEAAILREGGF IPAGS + LVY Sbjct: 901 RIEQRAEGTYAILDYKTGQPPTAKQVRMGLSPQLTLEAAILREGGFDGIPAGSLISQLVY 960 Query: 961 VRLSGNNPPGEQRSLELKIKTSDTPQPPDEAADSARRKLEALIRAFDDEQQAYTSLNLSM 1020 VRLSGNNPPGE+R LELKI SDTPQ PD+AA AR KLE LIR+F+D Q YTSLNLSM Sbjct: 961 VRLSGNNPPGEERILELKINKSDTPQHPDQAAQEARNKLEELIRSFEDVNQGYTSLNLSM 1020 Query: 1021 WANRYGAYDDLARIKEWSAAGGLGIEEW 1048 WANRYG+YDDLARIKEWSAAGGLG+EEW Sbjct: 1021 WANRYGSYDDLARIKEWSAAGGLGVEEW 1048 >ref|YP_530280.1| hypothetical protein RPC_0386 [Rhodopseudomonas palustris BisB18] gb|ABD85961.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas palustris BisB18] Length = 1042 Score = 1427 bits (3694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 753/1047 (71%), Positives = 844/1047 (80%), Gaps = 5/1047 (0%) Query: 1 MRVFSVPVSAPFLRTVISALVDGRLVAGFEAQSDPARLANATLYLPPRRAGRLAREIFLD 60 MRVF+ P SAPFLRT+I+ALV+GRLV GFEA+++P RLA ATLYLP RRAGR+AREIFLD Sbjct: 1 MRVFNTPASAPFLRTLIAALVEGRLVPGFEARANPERLAEATLYLPTRRAGRMAREIFLD 60 Query: 61 VLESDAAVLPRIVALGDIDEDELSFADQSEDVGGAAPLEIPPRLGELERRLTLAHLVAAW 120 VL+SDA +LPRIVALG IDEDEL+FAD +E G A LEIPP L EL+RRL LA LVAAW Sbjct: 61 VLQSDAVLLPRIVALGGIDEDELAFADDAEPFDGVASLEIPPNLAELDRRLILARLVAAW 120 Query: 121 AKTPVSAPLVVGGPASTLQLAGDLARLMDDMVTRGVDWRALDRLVPDQLDKYWQHSLDFL 180 K APLVVGGPAS L LAGDLARLMDDMVTR V+W ALD LVPD+LD YWQ +L FL Sbjct: 121 GKE--LAPLVVGGPASALALAGDLARLMDDMVTRKVEWAALDGLVPDELDNYWQLTLGFL 178 Query: 181 RIARDAWPSYLKEIGRIEPAARRDLLIEAEAARLTAHPTGPVIAAGSTGSMPATAKFLHA 240 +IAR+ WP+YL IEPAARRDLLIEAEA RL AH TGPVIAAGSTGSMPATA+FL A Sbjct: 179 KIAREHWPAYLAANALIEPAARRDLLIEAEAKRLAAHHTGPVIAAGSTGSMPATARFLRA 238 Query: 241 VAKLPNGAVVLPGLDTDLDEDSWDTIGGKRGDDGRFVTPPSSNHPQYAMHALLDRFGIRR 300 +A LP GAVVLPGLDT LD+D+W IGG R +G+ VTPPSSNHPQYA+HALL+ FGI R Sbjct: 239 IAALPQGAVVLPGLDTHLDDDAWRKIGGIRDANGKAVTPPSSNHPQYALHALLETFGIER 298 Query: 301 RDVESLAEPAPLGREVLVSETMRPSTATAQWHDRLERPEIVARISAGMTNLTVVEAPNPE 360 RDV L PAP GRE+L SE MRPS ATAQWH RL P + I+AGMT L V+ A NPE Sbjct: 299 RDVAPLGAPAPRGRELLASEAMRPSNATAQWHQRLAEPAVEQNIAAGMTELAVISADNPE 358 Query: 361 MEALAIAVAMREARHLGKSAALVTPDRALARRVMASLTRWKLEFDDSGGDALMETPAGVF 420 +EALAIAVAMR+AR L KSAALVTPDRALARRVMA+L RWKL FDDSGGDAL++TP GVF Sbjct: 359 LEALAIAVAMRQARELNKSAALVTPDRALARRVMAALGRWKLPFDDSGGDALIDTPPGVF 418 Query: 421 ARLTAEAAAKGLEPPTLLALLKHPLFRLGGPHGALRRAIEVLEIALLRGTRPQAGTGGLA 480 ARL+A+AA LEP TLLALLKHPL RLG G R AIE LE A+LRGTRP AG+ GL+ Sbjct: 419 ARLSAQAATAQLEPATLLALLKHPLLRLGQAPGFWRGAIETLEQAVLRGTRPAAGSAGLS 478 Query: 481 RDFARFRAELVKLHGGETSSLHAMEPRARLRDNELNQAEGLIARLQAALAPLEGMTSSKP 540 RDFARFR EL KL ETS LH EPRARL D+ L++A+ LIA+LQ ALAPLE + ++P Sbjct: 479 RDFARFRDELGKLRRRETSMLHGSEPRARLNDDALDRAQALIAQLQTALAPLETLDPNRP 538 Query: 541 YDFAELAARHREVLIALSGDRNGVAIVFEERAGASLASAFDELLAKQQPSGLMTPLADYP 600 DF++LA +HR V+ ALS D +G F+ G +L +AFD+L A PSGL DY Sbjct: 539 LDFSDLATKHRAVVAALSRDDDGFVAAFDGPQGNALNTAFDDLPA---PSGLAAQPGDYT 595 Query: 601 EVFQTAFADRMVRRPESARAQLNIFGQLEARLTESDRVILGGLVEGVWPPASRIDPWLSR 660 E+FQTAFADR+VRRPE+ A L IFG LEARLT+ DRVILGGLVEG+WPPA R DPWLSR Sbjct: 596 ELFQTAFADRVVRRPEAESASLRIFGPLEARLTQCDRVILGGLVEGIWPPAPRSDPWLSR 655 Query: 661 PMRHELGLDLPERRIGLSAHDFAQLLGHDEVILTHAAKVGGAPAVASRFLHRLEAVAGEA 720 PMRH+LGLDLPERRIGLSAHDFAQ+LG DEVIL+HAAKV GAPAVASRFLHRLEAVAG Sbjct: 656 PMRHQLGLDLPERRIGLSAHDFAQMLGADEVILSHAAKVAGAPAVASRFLHRLEAVAGAE 715 Query: 721 RWKAATSAGETYVQYAAELDRPDKVEPIPQPEPRPPREARPLKMSVTAIEDWLRDPYTIY 780 RWKAA + G+ Y+ YA LDRPDKV PI QP PRPPR+ARPL++SVTAIEDWLRDPYTIY Sbjct: 716 RWKAAEARGQIYLDYAHALDRPDKVVPITQPMPRPPRDARPLQLSVTAIEDWLRDPYTIY 775 Query: 781 ARYILKLDPLDPVDMPLSAADRGSAIHEALGEFTQVYADALPPDTLRTLREIGAKYFAPL 840 A++ILKL PLDPVDMPLSAADRGSAIHEALGEFTQV+A ALP D LR IG K+FAPL Sbjct: 776 AKFILKLAPLDPVDMPLSAADRGSAIHEALGEFTQVFAQALPDDPAAALRAIGQKHFAPL 835 Query: 841 MERPEARALWWPRFQRIAAWFAEWEQARRGQIEAIKAEIRGEIGIPLDDARTFTLSARAD 900 MERPEARALWWPRF RIA WFA WE RR + + AE RG + IPLD R F LSARAD Sbjct: 836 MERPEARALWWPRFLRIAHWFATWETERRLNVAGVDAETRGTLSIPLDATRRFVLSARAD 895 Query: 901 RIERRDDGSFAILDYKTGQPPTGKQVRMGLSPQLTLEAAILREGGFAEIPAGSSVGDLVY 960 RIERR D +FAILDYKTG+PPTGKQVRMGLSPQLTLEAAILREGGF I AGSSV +LVY Sbjct: 896 RIERRADRTFAILDYKTGRPPTGKQVRMGLSPQLTLEAAILREGGFEGIAAGSSVSELVY 955 Query: 961 VRLSGNNPPGEQRSLELKIKTSDTPQPPDEAADSARRKLEALIRAFDDEQQAYTSLNLSM 1020 V+LSGNNPPGE++ LELK ++ PD+AA AR KLEALIR FDD Y+SLNL M Sbjct: 956 VKLSGNNPPGEEKILELKRDRAEEALFPDDAAIEARAKLEALIRKFDDATTPYSSLNLPM 1015 Query: 1021 WANRYGAYDDLARIKEWSAAGGLGIEE 1047 WANRYG YDDLARIKEWSAAGGLG ++ Sbjct: 1016 WANRYGDYDDLARIKEWSAAGGLGDDQ 1042 >ref|YP_575418.1| hypothetical protein Nham_0057 [Nitrobacter hamburgensis X14] gb|ABE60958.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrobacter hamburgensis X14] Length = 1049 Score = 1401 bits (3627), Expect = 0.0, Method: Compositional matrix adjust. Identities = 720/1053 (68%), Positives = 827/1053 (78%), Gaps = 9/1053 (0%) Query: 1 MRVFSVPVSAPFLRTVISALVDGRLVAGFEAQSDPARLANATLYLPPRRAGRLAREIFLD 60 MRV +VP S PFLRTVI+ALVDG L+ GF ++ P RLA ATLYLP RRAGR+AR+IFLD Sbjct: 1 MRVRNVPTSVPFLRTVITALVDGALIEGFRPRAQPERLAEATLYLPTRRAGRMARDIFLD 60 Query: 61 VLESDAAVLPRIVALGDIDEDELSFADQSEDVGGAAPLEIPPRLGELERRLTLAHLVAAW 120 VL DA +LPRIVALGDIDEDEL+FA + A L++PP L L RRL LA L+ AW Sbjct: 61 VLNVDAVILPRIVALGDIDEDELAFAQAAS---SAEALQLPPALDGLARRLALAQLIEAW 117 Query: 121 AKT-----PVSAPLVVGGPASTLQLAGDLARLMDDMVTRGVDWRALDRLVPDQLDKYWQH 175 A+ P APLV+GGPASTL LA DLARLMDDM TRGVDWRALD LVPD LDKYWQ Sbjct: 118 ARQLKPGDPAQAPLVLGGPASTLALADDLARLMDDMATRGVDWRALDALVPDALDKYWQL 177 Query: 176 SLDFLRIARDAWPSYLKEIGRIEPAARRDLLIEAEAARLTAHPTGPVIAAGSTGSMPATA 235 +LDFL+IARD WP++L+E GRIEPA RRD LI+AEAARL AH GPVIAAGSTGSMP+TA Sbjct: 178 TLDFLKIARDYWPAHLEEAGRIEPAVRRDRLIDAEAARLAAHHGGPVIAAGSTGSMPSTA 237 Query: 236 KFLHAVAKLPNGAVVLPGLDTDLDEDSWDTIGGKRGDDGRFVTPPSSNHPQYAMHALLDR 295 K LH +A+LP+GAVVLPGLDTDLD+++W IGG R +G F PP++ HPQ+A+H LL R Sbjct: 238 KLLHVIARLPHGAVVLPGLDTDLDDEAWQLIGGMRDGNGAFTAPPAAGHPQFALHGLLRR 297 Query: 296 FGIRRRDVESLAEPAPLGREVLVSETMRPSTATAQWHDRLERPEIVARISAGMTNLTVVE 355 FGI RRDVE+L PAP GRE+L SE MRPS ATA+WH RL PE+ +I+AGM NL V+ Sbjct: 298 FGIARRDVETLGVPAPYGREMLTSEAMRPSEATARWHTRLAEPEVAEKIAAGMKNLAVIA 357 Query: 356 APNPEMEALAIAVAMREARHLGKSAALVTPDRALARRVMASLTRWKLEFDDSGGDALMET 415 A NPE+EAL+IA AMREAR L K+AALVT DRALARRVMA+L RW L FDDSGGDALM+T Sbjct: 358 AANPEVEALSIAAAMREARELNKTAALVTFDRALARRVMAALGRWNLAFDDSGGDALMDT 417 Query: 416 PAGVFARLTAEAAAKGLEPPTLLALLKHPLFRLGGPHGALRRAIEVLEIALLRGTRPQAG 475 PAG+FARL A A GLEPPTLLALLKHPL RLG G RA+ LE+A+LRGTRP G Sbjct: 418 PAGIFARLVAGTACNGLEPPTLLALLKHPLCRLGRVAGGWSRAVATLELAILRGTRPPPG 477 Query: 476 TGGLARDFARFRAELVKLHGGETSSLHAMEPRARLRDNELNQAEGLIARLQAALAPLEGM 535 + GLA +FARF EL KL GE+SSLH EPRA L+ + L+++ LIA L+ ALAPLEG Sbjct: 478 SKGLADEFARFCGELDKLDRGESSSLHRTEPRAALKLHRLDESRALIAALRDALAPLEGD 537 Query: 536 TSSKPYDFAELAARHREVLIALSGDRNGVAIVFEERAGASLASAFDELLAKQQPSGLMTP 595 +S+ DF AA+HRE + LS D GVA FE + G +LA+AFD+L + SGL Sbjct: 538 GASRSADFTAFAAQHREAIDVLSRDDQGVAAAFEGQHGLALAAAFDDLRKAGERSGLTVK 597 Query: 596 LADYPEVFQTAFADRMVRRPESARAQLNIFGQLEARLTESDRVILGGLVEGVWPPASRID 655 +ADYPEVF+TAF DR+VRRP++ A L I+G LEARLT+ DRVILGGL E VWPPA D Sbjct: 598 IADYPEVFETAFGDRIVRRPQATAASLRIYGPLEARLTQCDRVILGGLNESVWPPAPPSD 657 Query: 656 PWLSRPMRHELGLDLPERRIGLSAHDFAQLLGHDEVILTHAAKVGGAPAVASRFLHRLEA 715 PWLSRPMRHELGLDLPERRIGLSAHDFAQLLG D+VIL+HAAK GG+PAVASRFLHRL+A Sbjct: 658 PWLSRPMRHELGLDLPERRIGLSAHDFAQLLGADDVILSHAAKAGGSPAVASRFLHRLKA 717 Query: 716 VAGEARWKAATSAGETYVQYAAELDRPDKVEPIPQPEPRPPREARPLKMSVTAIEDWLRD 775 VAG RW A AG YVQYA +DRP++V P+ QPEP+PPR ARP ++SVTAIEDWLRD Sbjct: 718 VAGPERWATALQAGTRYVQYAEAIDRPEQVTPVAQPEPKPPRAARPTRLSVTAIEDWLRD 777 Query: 776 PYTIYARYILKLDPLDPVDMPLSAADRGSAIHEALGEFTQVYADALPPDTLRTLREIGAK 835 PYTIYA++ILKL PL+ VDMPLSAADRGSAIH +LG+FT+ Y ALP + LR IG Sbjct: 778 PYTIYAKHILKLLPLEAVDMPLSAADRGSAIHNSLGDFTKQYPAALPENPADVLRAIGES 837 Query: 836 YFAPLMERPEARALWWPRFQRIAAWFAEWEQARRGQIEAIKAEIRGEIGIPLDDARTFTL 895 FAPLM+RPEARALWWPRFQRIAAWFAEWEQ+RR Q+E I AEIRGEI IP+ RTF L Sbjct: 838 RFAPLMQRPEARALWWPRFQRIAAWFAEWEQSRRPQLETIDAEIRGEISIPVASDRTFHL 897 Query: 896 SARADRIERRDDGSFAILDYKTGQPPTGKQVRMGLSPQLTLEAAILREGGFAEIPAGSSV 955 SARADRIE DG F ILDYKTG PP+ KQVR+GLSPQLTLE+AILREGGF IPAG+SV Sbjct: 898 SARADRIEHLGDGRFTILDYKTGSPPSSKQVRLGLSPQLTLESAILREGGFEGIPAGASV 957 Query: 956 GDLVYVRLSGNNPPGEQRSLELKIKTSDTPQPPDEAADSARRKLEALIRAFDDEQQAYTS 1015 +LVYVRLSGNNPPGE + L +D Q PD+AAD A +L ALIRAFD+EQQ Y S Sbjct: 958 SELVYVRLSGNNPPGEPLQVNLDNGKTDM-QSPDQAADRALEELNALIRAFDNEQQGYPS 1016 Query: 1016 LNLSMWANRYGAYDDLARIKEWSAAGGLGIEEW 1048 L+L MW RYGAYDDLARIKEWSAAGGLGIEEW Sbjct: 1017 LDLPMWKTRYGAYDDLARIKEWSAAGGLGIEEW 1049