BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0085.p         (1071 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110] ...  1508   0.0  
ref|YP_001202305.1| helicase-exonuclease type V family protein A...  1491   0.0  
ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit ...  1488   0.0  
ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris B...  1342   0.0  
ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris B...  1335   0.0  

>ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110]
          Length = 1180

 Score = 1508 bits (3903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/987 (77%), Positives = 838/987 (84%), Gaps = 5/987 (0%)

Query: 1    VRDAQARASDPKASTFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANMA 60
            VR  QARASDP AS FVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANMA
Sbjct: 23   VRARQARASDPTASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANMA 82

Query: 61   ERVFTTLGHWVTLDDAGLDAAIREAGIAHPSATLRREARKLFACALETPGGLKVQTIHAL 120
            ERVFTTLGHWVTLDD  LDAAIR  GI HPSA LRREARKLFACALETPGGLKVQTIHAL
Sbjct: 83   ERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREARKLFACALETPGGLKVQTIHAL 142

Query: 121  CTRLLQQFPFEANVPARFAVLDDRDQNEMMERANLAVFLEASRIPDSPIGRALRTAMANA 180
            CTRLLQQFPFEANVPARF+V+D+RDQ +MMERANL V LEA+R P++  GRAL TAMA+A
Sbjct: 143  CTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVLLEAARDPETVTGRALLTAMASA 202

Query: 181  ADVTFKEVVREACLSRDHFMAWTDAAGNAAAAAAQMSAALGVPSDIRIEDVEREIIDGPN 240
            ADVTFKEVVREACLSRDHFMAWTD AGNA AAAAQM+A LGV +  RIEDVE EI+DGP 
Sbjct: 203  ADVTFKEVVREACLSRDHFMAWTDEAGNAEAAAAQMAAVLGVDAADRIEDVETEILDGPF 262

Query: 241  LPRASWKEMATLLDTSSKADQKQAERLRAALTFTGAAQVDEYLGVFLTDDRAPRASVVTN 300
            LPR+ W ++A  L+  SK+D  QA RLR A  F+G AQVD YLGVFLTD++ PR +V+T 
Sbjct: 263  LPRSRWDDIAFALEDGSKSDNDQASRLREAKAFSGGAQVDAYLGVFLTDEKLPRKAVLTK 322

Query: 301  NFIKKNSVAGHRFEAETDRLGPLIERRRAVVARDRTEALIHIATAAAAHYRREKLERGLL 360
             F   N      FE E  RL  LIE+RRAV  RDRT AL+HIATAAAA+YRREK ERGLL
Sbjct: 323  KFCDHNPSVARLFENEAQRLAGLIEKRRAVTMRDRTAALLHIATAAAANYRREKQERGLL 382

Query: 361  DYDDLIDKTLAMLDRVSSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIISEFTSGAG 420
            DYDDLIDKTLAML+RVSSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIISEFT+G G
Sbjct: 383  DYDDLIDKTLAMLNRVSSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIISEFTAGEG 442

Query: 421  ARDGLVRTVFAVGDEKQSIFSFQGAAPREFDLRRRELKRRFEEAGLKFDPVSFTYSFRSG 480
            AR+GL RT+FAVGDEKQSIFSFQGA PREFD RRREL R+F  AGLKFDPV+FTYSFRSG
Sbjct: 443  AREGLNRTIFAVGDEKQSIFSFQGAQPREFDARRRELHRKFTAAGLKFDPVAFTYSFRSG 502

Query: 481  PVILHSVDHVFREQDIFRSIHAVENGYPIHNAMTDAGPSLIELWDLAVADDRQDIEGWRA 540
              ILHSVDHVFR+  I++SIH+VE G+P+HNA+ DAGPS+IELWDLA ADDRQDIEGWRA
Sbjct: 503  AAILHSVDHVFRDPAIYKSIHSVEIGHPLHNALADAGPSVIELWDLAEADDRQDIEGWRA 562

Query: 541  PFDGVSVTSPEVKLARRIQAEIKRLVASGTMTGSEGGRRPLSYGDMLILVRRRGNAFDAV 600
            PFDGV+VTSPEVKLARRIQAEIKRLV SGT+TG EG RRPL YGDMLILVRRRGNAFDAV
Sbjct: 563  PFDGVAVTSPEVKLARRIQAEIKRLVESGTLTGHEGERRPLRYGDMLILVRRRGNAFDAV 622

Query: 601  IQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDL 660
            IQALKHAG+PVAGADRLKLTEHI IIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDL
Sbjct: 623  IQALKHAGVPVAGADRLKLTEHIGIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDL 682

Query: 661  FKLAYQRRGSLREALAAQAPTDERFAAALRRLEQCERRFTQETPFAFYAWLLGGDGGRAR 720
            F LA+ R+GSLR AL  QA   E+FAA LRRLE CE R  +ETPFAFYAWLLGGDGGRAR
Sbjct: 683  FALAWGRKGSLRRALGEQAAGSEKFAAVLRRLEACETRAREETPFAFYAWLLGGDGGRAR 742

Query: 721  ILRRLGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEVRVMT 780
            ILRRLGHEANDALDEFLELAL+YERKAPASLQGF+AWLR+ADTEVKRDMEISRDEVRVMT
Sbjct: 743  ILRRLGHEANDALDEFLELALNYERKAPASLQGFMAWLRSADTEVKRDMEISRDEVRVMT 802

Query: 781  VHGAKGLEASVVFLVDTTTSPSDTQRLRLIHLPQGNAAPNAPGVVVWAGKKAEDPPNVAE 840
            VHGAKGLEASVVF+VDTT+SP+D+QR+RLI +P+GN       VVVWAG+KA+DP  VAE
Sbjct: 803  VHGAKGLEASVVFMVDTTSSPADSQRVRLIQVPRGNGGE----VVVWAGRKADDPKPVAE 858

Query: 841  ARKAMLGDTEDEYRRLLYVAMTRAADRLIVGGCMPGNMNTVRKSSWYDLITKGLANSGLR 900
            ARKAML +TEDEYRRLLYVAMTRAADRLIVGGCMPGNM TVRK SWYDL+  GL  SGL 
Sbjct: 859  ARKAMLEETEDEYRRLLYVAMTRAADRLIVGGCMPGNMRTVRKLSWYDLVDTGLTGSGLE 918

Query: 901  LEELETPAGKVMRYSRPDDVADLTGATASAAAVPIALPSWLRAPAAPEASTASMLRPSDP 960
             + LETP GKV R++RP+DV  L G  A+     IALP WLR PA  E      +RPS  
Sbjct: 919  KQTLETPLGKVTRFARPEDVVAL-GTPATFVDQTIALPDWLRTPAPREMQDDDSVRPSGQ 977

Query: 961  ADGDSHPIRTGESVLLRARAIETGCFV 987
            +      +R+GESV  RA A++ G  V
Sbjct: 978  SAEGGRAVRSGESVQSRALALQRGTLV 1004


>ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit
           [Bradyrhizobium sp. ORS 278]
 emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit
           [Bradyrhizobium sp. ORS 278]
          Length = 1156

 Score = 1491 bits (3860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 741/994 (74%), Positives = 832/994 (83%), Gaps = 7/994 (0%)

Query: 1   VRDAQARASDPKASTFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANMA 60
           VRDAQ RAS+P AS FVSANAGSGKTHVLVQRVIRLLL GVPPEKILCITFTKAAAANMA
Sbjct: 11  VRDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMA 70

Query: 61  ERVFTTLGHWVTLDDAGLDAAIREAGIAHPSATLRREARKLFACALETPGGLKVQTIHAL 120
           ERVF+TLGHWVTLDD  LD+AI+  GI      LR  ARKLFA ALETPGGLKVQTIHAL
Sbjct: 71  ERVFSTLGHWVTLDDGALDSAIKSTGILTSDKKLRASARKLFASALETPGGLKVQTIHAL 130

Query: 121 CTRLLQQFPFEANVPARFAVLDDRDQNEMMERANLAVFLEASRIPDSPIGRALRTAMANA 180
           CTRLLQQFPFEANVPARF+VLD+RDQ EMMERANL V L A+R PDSPIGRAL+ AMANA
Sbjct: 131 CTRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVLLNAARAPDSPIGRALQIAMANA 190

Query: 181 ADVTFKEVVREACLSRDHFMAWTDAAGNAAAAAAQMSAALGVPSDIRIEDVEREIIDGPN 240
           AD TFKEVVREACLSRDHFMAWTD AG    AA  +   LG+ +   ++ +ER+I+DGPN
Sbjct: 191 ADSTFKEVVREACLSRDHFMAWTDGAGRVEVAAQHLGEVLGIGAGETLDAIERDILDGPN 250

Query: 241 LPRASWKEMATLLDTSSKADQKQAERLRAALTFTGAAQVDEYLGVFLTDDRAPRASVVTN 300
           LPRA+W E+A  LD  +K DQKQA++LRAAL F+G+ +VDEYL VFLTDD+ PR SV+T 
Sbjct: 251 LPRANWTEIAARLDGGAKTDQKQADQLRAALAFSGSDRVDEYLRVFLTDDKEPRRSVLTK 310

Query: 301 NFIKKNSVAGHRFEAETDRLGPLIERRRAVVARDRTEALIHIATAAAAHYRREKLERGLL 360
            F + N      F+AE  RL  LIE+RRA V RDRTEAL+ IATAAAA+YRREK ERGLL
Sbjct: 311 KFAESNPGLAGLFDAEARRLDHLIEKRRAAVVRDRTEALLQIATAAAANYRREKDERGLL 370

Query: 361 DYDDLIDKTLAMLDRVSSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIISEFTSGAG 420
           DYDDLIDKTL ML+RVS+GWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHII EFTSGAG
Sbjct: 371 DYDDLIDKTLVMLNRVSAGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIIEEFTSGAG 430

Query: 421 ARDGLVRTVFAVGDEKQSIFSFQGAAPREFDLRRRELKRRFEEAGLKFDPVSFTYSFRSG 480
           ARDGL RT+FAVGDEKQSIFSFQGA P EFD RRR+L++RF +AGL FDPVSFTYSFRSG
Sbjct: 431 ARDGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQLQKRFTDAGLLFDPVSFTYSFRSG 490

Query: 481 PVILHSVDHVFREQDIFRSIHAVENGYPIHNAMTDAGPSLIELWDLAVADDRQDIEGWRA 540
           P +LH+VDHVFRE++++ SIH+ + GYPIHNA+TDAGPSL+ELW L   DDR++IEGWRA
Sbjct: 491 PTVLHAVDHVFREREVYSSIHSPDIGYPIHNALTDAGPSLVELWSLCERDDRKEIEGWRA 550

Query: 541 PFDGVSVTSPEVKLARRIQAEIKRLVASGTMTGSEGGRRPLSYGDMLILVRRRGNAFDAV 600
           PFDGVSVTSPEVKL+RRIQAEIKRL+  GTMTG +G RR LSYGDMLILVRRRG AFDAV
Sbjct: 551 PFDGVSVTSPEVKLSRRIQAEIKRLIRVGTMTGHDGARRRLSYGDMLILVRRRGTAFDAV 610

Query: 601 IQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDL 660
           IQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALA ALKSPLFGLDDDDL
Sbjct: 611 IQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALATALKSPLFGLDDDDL 670

Query: 661 FKLAYQRRGSLREALAAQAPTDERFAAALRRLEQCERRFTQETPFAFYAWLLGGDGGRAR 720
           FKLA+QRRGSLREAL+A A  D R  A +RRL+QCERR  ++TPFAFYAWLLGGDGGR R
Sbjct: 671 FKLAWQRRGSLREALSAHAADDPRLQAVVRRLQQCERRAAEDTPFAFYAWLLGGDGGRRR 730

Query: 721 ILRRLGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEVRVMT 780
           IL RLGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEVRVMT
Sbjct: 731 ILARLGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEVRVMT 790

Query: 781 VHGAKGLEASVVFLVDTTTSPSDTQRLRLIHLPQGNAAPNAPGVVVWAGKKAEDPPNVAE 840
           VHGAKGLEASVVFLVDTT+SP+D+QRLRLIH+P G+       +VVWAG+KA+DP  V  
Sbjct: 791 VHGAKGLEASVVFLVDTTSSPADSQRLRLIHVPHGDRE-----IVVWAGRKADDPQAVVA 845

Query: 841 ARKAMLGDTEDEYRRLLYVAMTRAADRLIVGGCMPGNMNTVRKSSWYDLITKGLANSGLR 900
           AR AML +TEDEYRRLLYVAMTRAADRL++GGCMPGNMN VR  SWYDL+ +GL  +GL+
Sbjct: 846 ARAAMLKETEDEYRRLLYVAMTRAADRLVIGGCMPGNMNNVRGGSWYDLMARGLDAAGLQ 905

Query: 901 LEELETPAGKVMRYSRPDDVADLTGATA-SAAAVPIALPSWLRAPAAPEASTASMLRPSD 959
           +E +ET  G V RY+RP+D+A+     A   A   + LP+WLR  A       ++LRPSD
Sbjct: 906 VEVIETEDGPVKRYARPEDIAETAKDEARQMAESAVELPAWLRTAAVEAPGDVAVLRPSD 965

Query: 960 PADGDSHPIRTGESVLLRARAIETGCFVFAAAQA 993
           P+  D  P+RTGES+  R+ A++ G  V    Q+
Sbjct: 966 PS-SDERPVRTGESLAARSLAMQRGTLVHRLLQS 998


>ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp.
           BTAi1]
          Length = 1156

 Score = 1488 bits (3851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 731/988 (73%), Positives = 831/988 (84%), Gaps = 7/988 (0%)

Query: 1   VRDAQARASDPKASTFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANMA 60
           VRDAQ RAS+P AS FVSANAGSGKTHVLVQRVIRLLL GVPPEKILCITFTKAAAANMA
Sbjct: 11  VRDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMA 70

Query: 61  ERVFTTLGHWVTLDDAGLDAAIREAGIAHPSATLRREARKLFACALETPGGLKVQTIHAL 120
           ERVF+TLGHWVTLDD  LD+AI+  GI  P   LR  ARKLFA ALETPGGLKVQTIHAL
Sbjct: 71  ERVFSTLGHWVTLDDEALDSAIKSTGIPTPDKKLRASARKLFASALETPGGLKVQTIHAL 130

Query: 121 CTRLLQQFPFEANVPARFAVLDDRDQNEMMERANLAVFLEASRIPDSPIGRALRTAMANA 180
           CTRLLQQFPFEANVPARF+VLD+RDQ EMMERANL V L+A+R PDS +GRAL+ AMANA
Sbjct: 131 CTRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVLLDAARTPDSAVGRALQVAMANA 190

Query: 181 ADVTFKEVVREACLSRDHFMAWTDAAGNAAAAAAQMSAALGVPSDIRIEDVEREIIDGPN 240
           AD TFKEVVREACLSRDHFMAWTD AG    AA Q+   LG+  D  +  +E++I+DGPN
Sbjct: 191 ADSTFKEVVREACLSRDHFMAWTDGAGRVEVAAQQLGQVLGIAPDETLGAIEQDILDGPN 250

Query: 241 LPRASWKEMATLLDTSSKADQKQAERLRAALTFTGAAQVDEYLGVFLTDDRAPRASVVTN 300
           LPRA W E+A  LD  +K DQKQA++LRAAL F+G+ QVDEYL VFLT+D+ PR S++T 
Sbjct: 251 LPRADWTEIAARLDGGAKTDQKQADQLRAALAFSGSDQVDEYLRVFLTEDKEPRKSLLTK 310

Query: 301 NFIKKNSVAGHRFEAETDRLGPLIERRRAVVARDRTEALIHIATAAAAHYRREKLERGLL 360
            F   N      FE+E  RL  LIE+RRA V RDRTEAL+ IATAAAA+YRREK ERGLL
Sbjct: 311 KFADSNPGLAGLFESEARRLDRLIEKRRAAVVRDRTEALLQIATAAAANYRREKEERGLL 370

Query: 361 DYDDLIDKTLAMLDRVSSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIISEFTSGAG 420
           DYDDLIDKTL ML+RVS+GWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHII EFT+GAG
Sbjct: 371 DYDDLIDKTLVMLNRVSAGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIIEEFTAGAG 430

Query: 421 ARDGLVRTVFAVGDEKQSIFSFQGAAPREFDLRRRELKRRFEEAGLKFDPVSFTYSFRSG 480
           AR+GL RT+FAVGDEKQSIFSFQGA P EFD RRR+L++RF +AGL FDPVSFTYSFRSG
Sbjct: 431 AREGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQLQKRFTDAGLLFDPVSFTYSFRSG 490

Query: 481 PVILHSVDHVFREQDIFRSIHAVENGYPIHNAMTDAGPSLIELWDLAVADDRQDIEGWRA 540
           P +LH+VDHVFRE++++ SIH+ + GYP+HN++TDAGPSL+ELW L   DDR++IEGWRA
Sbjct: 491 PTVLHAVDHVFREREVYSSIHSPDIGYPVHNSLTDAGPSLVELWSLCERDDRKEIEGWRA 550

Query: 541 PFDGVSVTSPEVKLARRIQAEIKRLVASGTMTGSEGGRRPLSYGDMLILVRRRGNAFDAV 600
           PFDGVSVTSPEVKLARRIQAEIKRL+ +GTMTG +G RR LSYGDMLILVRRRG AFDAV
Sbjct: 551 PFDGVSVTSPEVKLARRIQAEIKRLIRAGTMTGHDGARRRLSYGDMLILVRRRGTAFDAV 610

Query: 601 IQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDL 660
           IQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALA+ALKSPLFGLDDDDL
Sbjct: 611 IQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAIALKSPLFGLDDDDL 670

Query: 661 FKLAYQRRGSLREALAAQAPTDERFAAALRRLEQCERRFTQETPFAFYAWLLGGDGGRAR 720
           FKLA+QRRGSLR+AL AQA  D R  A LRRL+QCERR  ++TPFAFYAWLLGGDGGR R
Sbjct: 671 FKLAWQRRGSLRDALTAQAADDPRLQAVLRRLQQCERRAAEDTPFAFYAWLLGGDGGRRR 730

Query: 721 ILRRLGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEVRVMT 780
           IL RLGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDE+RVMT
Sbjct: 731 ILARLGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEIRVMT 790

Query: 781 VHGAKGLEASVVFLVDTTTSPSDTQRLRLIHLPQGNAAPNAPGVVVWAGKKAEDPPNVAE 840
           VHGAKGLEASVVFLVDTT+SP+D+QRLRLIH+  G+       +VVWAG+K++DP  VA 
Sbjct: 791 VHGAKGLEASVVFLVDTTSSPADSQRLRLIHVSHGDQE-----IVVWAGRKSDDPQPVAT 845

Query: 841 ARKAMLGDTEDEYRRLLYVAMTRAADRLIVGGCMPGNMNTVRKSSWYDLITKGLANSGLR 900
           AR AML +TEDEYRRLLYVAMTRAADRL++GGCMPGNM  +R  SWYDL+ +GL  +GL+
Sbjct: 846 ARAAMLKETEDEYRRLLYVAMTRAADRLVIGGCMPGNMTNIRGGSWYDLMARGLDAAGLQ 905

Query: 901 LEELETPAGKVMRYSRPDDVADLTGATA-SAAAVPIALPSWLRAPAAPEASTASMLRPSD 959
           +E +ET  G + RY+R +D+A+     A     +P+ LP+WLR  AA      ++LRPSD
Sbjct: 906 VEVIETEDGPIKRYARAEDIAETAKDEARRMVEMPVELPAWLRTVAAETPGEVAVLRPSD 965

Query: 960 PADGDSHPIRTGESVLLRARAIETGCFV 987
           P+  D  P+R+GES+  R+ A++ G  V
Sbjct: 966 PS-ADERPVRSGESLAARSLAMQRGTLV 992


>ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris BisB18]
          Length = 1164

 Score = 1342 bits (3474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/987 (70%), Positives = 789/987 (79%), Gaps = 8/987 (0%)

Query: 5   QARASDPKASTFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANMAERVF 64
           Q +ASDP AS FVSANAGSGKTHVLVQRVIRLLL+GVPPEKILCITFTKAAAANMA+RVF
Sbjct: 15  QVQASDPTASVFVSANAGSGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAANMAQRVF 74

Query: 65  TTLGHWVTLDDAGLDAAIREAGIAHPSATLRREARKLFACALETPGGLKVQTIHALCTRL 124
           TTLGHWVTL D  LDAAIR AGIA P + LR  AR+LFACALETPGGLKVQTIHALCTRL
Sbjct: 75  TTLGHWVTLSDDSLDAAIRAAGIAQPDSKLRMRARELFACALETPGGLKVQTIHALCTRL 134

Query: 125 LQQFPFEANVPARFAVLDDRDQNEMMERANLAVFLEASRIPDSPIGRALRTAMANAADVT 184
           LQQFPFEANVPARFAVLD+RDQ EMMERA+L+V L+A++ P+S  G+AL  AM +AADVT
Sbjct: 135 LQQFPFEANVPARFAVLDERDQTEMMERASLSVLLQAAQAPNSAAGKALTVAMTSAADVT 194

Query: 185 FKEVVREACLSRDHFMAWTDAAGNAAAAAAQMSAALGVPSDIRIEDVEREIIDGPNLPRA 244
           F++VVR+AC SRD FMAW   AG+  AA AQ+SAALGV  D     V++EI+DGPNLPRA
Sbjct: 195 FRDVVRDACFSRDKFMAWIARAGSTEAAMAQLSAALGVAPDDSCAAVDQEIVDGPNLPRA 254

Query: 245 SWKEMATLLDTSSKADQKQAERLRAALTFTGAAQVDEYLGVFLTDDRAPRASVVTNNFIK 304
            W++ A++L+  SK D  QAERLR A T TG  Q+  YL +FLT D  PR ++ T     
Sbjct: 255 RWEKAASILEGGSKTDGDQAERLRQAATLTGNDQIARYLQIFLTKDFTPRKTLATKKITD 314

Query: 305 KNSVAGHRFEAETDRLGPLIERRRAVVARDRTEALIHIATAAAAHYRREKLERGLLDYDD 364
                    + E +R+GPL+ERRRA+  R+RT+AL+ IA+  AA Y R+K +RGLLDYDD
Sbjct: 315 ARPDLVAAMKRECERIGPLLERRRALALRERTQALLVIASDVAADYARQKQDRGLLDYDD 374

Query: 365 LIDKTLAMLDRVSSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIISEFTSGAGARDG 424
           LIDKTL ML+R+SSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIV H+I+EFT+G GARD 
Sbjct: 375 LIDKTLDMLNRISSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVDHLIAEFTAGVGARD- 433

Query: 425 LVRTVFAVGDEKQSIFSFQGAAPREFDLRRRELKRRFEEAGLKFDPVSFTYSFRSGPVIL 484
           + RT+FAVGDEKQSIFSFQGA+PREF LRR  L+ RF  A LKFDP+SF YSFRSG  IL
Sbjct: 434 VKRTIFAVGDEKQSIFSFQGASPREFALRRSALQTRFRNAELKFDPISFNYSFRSGAAIL 493

Query: 485 HSVDHVFREQDIFRSIHAVENGYPIHNAMTDAGPSLIELWDLAVADDRQDIEGWRAPFDG 544
            SVDHVFR+Q I+RSIHA +  YPIH ++ DAGPSLI+LW+L   D+RQD+EGWRAPFD 
Sbjct: 494 QSVDHVFRDQAIYRSIHA-DTTYPIHESLADAGPSLIDLWELQQPDERQDLEGWRAPFDA 552

Query: 545 VSVTSPEVKLARRIQAEIKRLVASGTMTGSEGGRRPLSYGDMLILVRRRGNAFDAVIQAL 604
           +  TSPEVKL++R+QAEI  L+ +GT+TG +G RR L YGD+LILVRRRG AFDA+IQAL
Sbjct: 553 LPETSPEVKLSQRVQAEIAELIGNGTLTGPKGDRRALRYGDVLILVRRRGKAFDAIIQAL 612

Query: 605 KHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLA 664
           K  GIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLA
Sbjct: 613 KRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLA 672

Query: 665 YQRRGSLREALAAQAPTDERFAAALRRLEQCERRFTQETPFAFYAWLLGGDGGRARILRR 724
           +QR+GSLR+ALAA A  D +F  A RRL+ CE+R   +TPFAFYAWLLGGDGGRARILRR
Sbjct: 673 WQRKGSLRDALAAHAAEDGKFNTAHRRLQDCEKRARADTPFAFYAWLLGGDGGRARILRR 732

Query: 725 LGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEVRVMTVHGA 784
           LGHEA DALDEFLELAL YERKAPASLQGF+AWLRAADTEVKRDMEISRDEVRVMTVHGA
Sbjct: 733 LGHEATDALDEFLELALGYERKAPASLQGFMAWLRAADTEVKRDMEISRDEVRVMTVHGA 792

Query: 785 KGLEASVVFLVDTTTSPSDTQRLRLIHLPQGNAAPNAPGVVVWAGKKAEDPPNVAEARKA 844
           KGLEA VVFLVDTT+SP+DTQRL L+HLPQGNAA + P V VWAGKKA+DPP VA AR A
Sbjct: 793 KGLEAPVVFLVDTTSSPADTQRLNLVHLPQGNAALSGPSVAVWAGKKADDPPVVANARAA 852

Query: 845 MLGDTEDEYRRLLYVAMTRAADRLIVGGCMPGNMNTVRKSSWYDLITKGLANSGLRLEEL 904
           M+ +TEDEYRRLLYVAMTRAADRLIVGGC PGN   VR  SWYDLI KGL  SGL ++ +
Sbjct: 853 MIAETEDEYRRLLYVAMTRAADRLIVGGCQPGNRAEVRPLSWYDLICKGLEGSGLAMQTV 912

Query: 905 ETPAGKVMRYSRPDDVA----DLTGATASAAAVPIALPSWLRAPAAPEASTASMLRPSDP 960
             P G V RY R +D+             AA  P  LP+WL  PAAP      +LRPSD 
Sbjct: 913 PPPDGVVKRYCRQEDLVPEQDQAAAPPRVAAPAPQPLPAWLNQPAAPTPLAERVLRPSD- 971

Query: 961 ADGDSHPIRTGESVLLRARAIETGCFV 987
            D DS   R  +S   RA+A + G  V
Sbjct: 972 -DADSRRSRAEDSSAPRAQARQRGQLV 997


>ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
           palustris BisA53]
          Length = 1165

 Score = 1335 bits (3454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/985 (68%), Positives = 783/985 (79%), Gaps = 3/985 (0%)

Query: 5   QARASDPKASTFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANMAERVF 64
           Q +ASDP AS FVSANAG+GKTHVLVQRVIRLLL+GVPPEKILCITFTKAAAANMA+RVF
Sbjct: 15  QVQASDPTASVFVSANAGAGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAANMAQRVF 74

Query: 65  TTLGHWVTLDDAGLDAAIREAGIAHPSATLRREARKLFACALETPGGLKVQTIHALCTRL 124
           +TLGHWVTL D  LDAAIR AGIA P A LR  AR+LFACALETPGGLKVQTIHALCTRL
Sbjct: 75  STLGHWVTLSDGALDAAIRGAGIAKPDAKLRTRARELFACALETPGGLKVQTIHALCTRL 134

Query: 125 LQQFPFEANVPARFAVLDDRDQNEMMERANLAVFLEASRIPDSPIGRALRTAMANAADVT 184
           LQQFPFEANVPARF VLD+RDQ EMMERA+L V L A+  PDS IGRAL TAM +AAD T
Sbjct: 135 LQQFPFEANVPARFTVLDERDQAEMMERASLGVLLRAASAPDSEIGRALTTAMTSAADTT 194

Query: 185 FKEVVREACLSRDHFMAWTDAAGNAAAAAAQMSAALGVPSDIRIEDVEREIIDGPNLPRA 244
           F++VVREAC+SRD F+AW D AG+   A A++SAALGV        ++ +I+DGP+LPRA
Sbjct: 195 FRDVVREACMSRDSFLAWVDRAGSTERAMAELSAALGVAPKDDAASIDSDIVDGPHLPRA 254

Query: 245 SWKEMATLLDTSSKADQKQAERLRAALTFTGAAQVDEYLGVFLTDDRAPRASVVTNNFIK 304
            W+  A + +     D KQA+RLR AL  +G AQ++ YL VF T D   R S+ T    +
Sbjct: 255 QWEAAAEVFEAGGANDAKQAQRLREALDLSGHAQIERYLSVFCTGDGGARKSLATKKIAE 314

Query: 305 KNSVAGHRFEAETDRLGPLIERRRAVVARDRTEALIHIATAAAAHYRREKLERGLLDYDD 364
            +         E +R+G L++RRRAV ARDRT+AL+ IAT+ A   RREK ERGLLDYDD
Sbjct: 315 ADPALCAVLAREAERIGALLQRRRAVAARDRTQALLLIATSVADAIRREKQERGLLDYDD 374

Query: 365 LIDKTLAMLDRVSSGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIISEFTSGAGARDG 424
           LIDKTLAMLDR+S+GWVHYKLDRGVDHVLIDEAQDTSP+QWDIV  +I+EFT+G GAR+ 
Sbjct: 375 LIDKTLAMLDRISAGWVHYKLDRGVDHVLIDEAQDTSPKQWDIVERLIAEFTAGEGAREN 434

Query: 425 LVRTVFAVGDEKQSIFSFQGAAPREFDLRRRELKRRFEEAGLKFDPVSFTYSFRSGPVIL 484
           + RT+FAVGDEKQSIFSFQGA PREF  RR  L+ RF++A L F+ VSF YSFRSG  IL
Sbjct: 435 IKRTIFAVGDEKQSIFSFQGAVPREFAERRETLRSRFQKADLSFEKVSFNYSFRSGAAIL 494

Query: 485 HSVDHVFREQDIFRSIHAVENGYPIHNAMTDAGPSLIELWDLAVADDRQDIEGWRAPFDG 544
            SVDHVFR++DI+RSIHA +  YP+H ++TDAGPSLI+LW+L   D+RQD+EGW+APFD 
Sbjct: 495 QSVDHVFRDEDIYRSIHA-DTTYPVHQSLTDAGPSLIDLWELQQPDERQDLEGWQAPFDA 553

Query: 545 VSVTSPEVKLARRIQAEIKRLVASGTMTGSEGGRRPLSYGDMLILVRRRGNAFDAVIQAL 604
           VS TSPEVKLA+R+QAEI  L++ GT+TG  G RR L YGD+LILVRRRG+AFDAVIQAL
Sbjct: 554 VSATSPEVKLAQRVQAEIAALISGGTLTGPVGSRRRLRYGDVLILVRRRGSAFDAVIQAL 613

Query: 605 KHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLA 664
           K   IPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLA
Sbjct: 614 KRGNIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLA 673

Query: 665 YQRRGSLREALAAQAPTDERFAAALRRLEQCERRFTQETPFAFYAWLLGGDGGRARILRR 724
           ++R+GSLR+ALA QA T+++F  A +RL  C +    ++PF+FYAWLLGGD GRAR+LRR
Sbjct: 674 WERQGSLRQALADQAATNDKFGIAQQRLNDCAKLALSQSPFSFYAWLLGGDRGRARMLRR 733

Query: 725 LGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEVRVMTVHGA 784
           LGHEA DALDEFLELAL+YERKAPA+LQGFVAWLRAADTE+KRDMEI+RDEVRVMTVHGA
Sbjct: 734 LGHEATDALDEFLELALAYERKAPATLQGFVAWLRAADTEIKRDMEIARDEVRVMTVHGA 793

Query: 785 KGLEASVVFLVDTTTSPSDTQRLRLIHLPQGNAAPNAPGVVVWAGKKAEDPPNVAEARKA 844
           KGLEA VVFL+DTT+SP+DTQRL LI LPQGNA P  P V+VWAGKKA+DPP VA AR A
Sbjct: 794 KGLEAPVVFLIDTTSSPADTQRLNLIRLPQGNAGPGTPSVMVWAGKKADDPPAVANARAA 853

Query: 845 MLGDTEDEYRRLLYVAMTRAADRLIVGGCMPGNMNTVRKSSWYDLITKGLANSGLRLEEL 904
           M+GDTEDEYRRLLYVAMTRAADRLIVGGC PGN N VR++SWYDLI KGL  SGL ++E+
Sbjct: 854 MIGDTEDEYRRLLYVAMTRAADRLIVGGCQPGNRNEVREASWYDLICKGLERSGLPMQEI 913

Query: 905 ETPAGKVMRYSRPDDVADLTGATASAA-AVPIA-LPSWLRAPAAPEASTASMLRPSDPAD 962
             P G V R+ R +D    T   A+AA   PIA LP WL  PA P   T   L+PS    
Sbjct: 914 AGPDGAVKRFCRAEDAWPETAIAATAALPEPIAELPFWLSLPAPPLTPTERTLQPSSAEI 973

Query: 963 GDSHPIRTGESVLLRARAIETGCFV 987
             +   R GE    R RA + G  V
Sbjct: 974 DAARTARRGEPTDARERARQRGVLV 998