BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0082.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_575825.1| hypothetical protein Nham_0475 [Nitrobacter ham... 444 e-123 ref|YP_779097.1| hypothetical protein RPE_0156 [Rhodopseudomonas... 429 e-118 ref|YP_530410.1| hypothetical protein RPC_0516 [Rhodopseudomonas... 421 e-116 ref|YP_001243352.1| hypothetical protein BBta_7599 [Bradyrhizobi... 416 e-114 ref|YP_001202757.1| hypothetical protein BRADO0578 [Bradyrhizobi... 414 e-114 >ref|YP_575825.1| hypothetical protein Nham_0475 [Nitrobacter hamburgensis X14] gb|ABE61365.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 312 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/298 (78%), Positives = 263/298 (88%) Query: 1 MLTIASLWIPFTIIAAFGQVARNAMQRHLTGPLGTWGATNIRFLFGLPFSVLFFALAVLL 60 MLT+ASLWIPFT+ AAFGQVARNAMQR LTGPLGTWGATNIRFLFG PF+++FFAL + Sbjct: 14 MLTVASLWIPFTVTAAFGQVARNAMQRSLTGPLGTWGATNIRFLFGFPFALIFFALVIAF 73 Query: 61 TGDRVPWPAAAFWPWLLTGALSQIVGTGFMLLAMNDRSFVVTTAYMKTEAIQTAIFGFIF 120 +GD VPWP AAFW WLL GAL+QIV TG MLLAMNDRSFVVTTAY+KTEAIQTAIFGF+F Sbjct: 74 SGDPVPWPVAAFWLWLLLGALTQIVATGLMLLAMNDRSFVVTTAYLKTEAIQTAIFGFVF 133 Query: 121 LGDHLTTTKVIAIVIATIGVVITALRPGGQKSFADLRPTVLGLGAAAVFAISAVSFRGAI 180 LGDHLT KV+AI+IAT+GVVITALRPGG + FADL+PTVLGL AAA FA+SAV FRGAI Sbjct: 134 LGDHLTVLKVVAILIATVGVVITALRPGGARGFADLKPTVLGLVAAASFALSAVGFRGAI 193 Query: 181 IAVPGVSFVTAASYTLMWSLLVQTLILSVYLLLRAPDVLRSILKLWRPSMFAGFMGAFSS 240 I VPGVSFVTAASYTL++ L VQT +L+ YLLLRAPDV + IL LWRPSM AGF+GAF+S Sbjct: 194 IVVPGVSFVTAASYTLVFGLFVQTAVLTAYLLLRAPDVPKKILGLWRPSMVAGFLGAFAS 253 Query: 241 QFWFLAFALTAAANVRTLALIEVLFAQGVAYVSLKQPFSLREVFGIVLIVIGVALLIA 298 QFWFLAFALTAAANVRTLAL+EVLFAQ V+Y S KQPFS E+ GIVLI+IGV LL+A Sbjct: 254 QFWFLAFALTAAANVRTLALVEVLFAQAVSYYSFKQPFSFHEIGGIVLILIGVGLLVA 311 >ref|YP_779097.1| hypothetical protein RPE_0156 [Rhodopseudomonas palustris BisA53] gb|ABJ04117.1| protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris BisA53] Length = 299 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 227/298 (76%), Positives = 260/298 (87%) Query: 1 MLTIASLWIPFTIIAAFGQVARNAMQRHLTGPLGTWGATNIRFLFGLPFSVLFFALAVLL 60 M T+A+LWIPFT++AA GQVARNAMQR LTGPLGTWGATNIRFLFG PFS++FFA+ +L Sbjct: 1 MFTVAALWIPFTLVAAVGQVARNAMQRQLTGPLGTWGATNIRFLFGFPFSIVFFAIVLLA 60 Query: 61 TGDRVPWPAAAFWPWLLTGALSQIVGTGFMLLAMNDRSFVVTTAYMKTEAIQTAIFGFIF 120 TGD V WP AAFWPWLL GALSQI TG ML AM DRSFVVTTAY+KTEAIQTA+FGF+F Sbjct: 61 TGDDVSWPVAAFWPWLLLGALSQIAATGLMLAAMTDRSFVVTTAYLKTEAIQTAMFGFVF 120 Query: 121 LGDHLTTTKVIAIVIATIGVVITALRPGGQKSFADLRPTVLGLGAAAVFAISAVSFRGAI 180 LGDHLT KV AIVIAT+GVVITALRPGG K F ++RPT++GLGAAA FA+SAV FRGAI Sbjct: 121 LGDHLTLPKVAAIVIATVGVVITALRPGGAKGFGNVRPTLMGLGAAAGFALSAVGFRGAI 180 Query: 181 IAVPGVSFVTAASYTLMWSLLVQTLILSVYLLLRAPDVLRSILKLWRPSMFAGFMGAFSS 240 IA+P VSFVTAA+ TL+++L VQTL+LSVYLLLRAP VLR I +LW+PSM AGF+GA +S Sbjct: 181 IALPDVSFVTAATTTLVFALGVQTLVLSVYLLLRAPKVLREIARLWKPSMLAGFIGALAS 240 Query: 241 QFWFLAFALTAAANVRTLALIEVLFAQGVAYVSLKQPFSLREVFGIVLIVIGVALLIA 298 QFWFLAFALTAAANVRTLAL+EVLFAQ VAY + KQP RE+ GIVLIV+GVA+L+A Sbjct: 241 QFWFLAFALTAAANVRTLALVEVLFAQAVAYYTFKQPLLPRELAGIVLIVVGVAMLVA 298 >ref|YP_530410.1| hypothetical protein RPC_0516 [Rhodopseudomonas palustris BisB18] gb|ABD86091.1| protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris BisB18] Length = 299 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 233/298 (78%), Positives = 261/298 (87%) Query: 1 MLTIASLWIPFTIIAAFGQVARNAMQRHLTGPLGTWGATNIRFLFGLPFSVLFFALAVLL 60 M +IA+LWIPFT++AA GQVARNAMQR LTGPLGTWGATNIRFLFG PFS++FFA+ ++ Sbjct: 1 MFSIAALWIPFTLVAALGQVARNAMQRQLTGPLGTWGATNIRFLFGFPFSLVFFAVVIVA 60 Query: 61 TGDRVPWPAAAFWPWLLTGALSQIVGTGFMLLAMNDRSFVVTTAYMKTEAIQTAIFGFIF 120 TGD VPWP AAFWPWLL GALSQI+GTG ML AMNDRSFVVTTAY+KTEAIQTAIFGF+F Sbjct: 61 TGDAVPWPTAAFWPWLLLGALSQILGTGLMLAAMNDRSFVVTTAYLKTEAIQTAIFGFVF 120 Query: 121 LGDHLTTTKVIAIVIATIGVVITALRPGGQKSFADLRPTVLGLGAAAVFAISAVSFRGAI 180 LGDHLT KV AI+IAT+GVVITALRPGG KSF DL+PT+ GL AAA FA+SAV FRGAI Sbjct: 121 LGDHLTWLKVTAILIATLGVVITALRPGGDKSFTDLKPTLQGLVAAAAFALSAVGFRGAI 180 Query: 181 IAVPGVSFVTAASYTLMWSLLVQTLILSVYLLLRAPDVLRSILKLWRPSMFAGFMGAFSS 240 I VP VSFVTAASYTL+ +L VQTL+L++YLL RAP VLR IL+LW+PSM AGF GA +S Sbjct: 181 IVVPDVSFVTAASYTLVAALGVQTLVLTIYLLARAPKVLRDILQLWKPSMLAGFTGALAS 240 Query: 241 QFWFLAFALTAAANVRTLALIEVLFAQGVAYVSLKQPFSLREVFGIVLIVIGVALLIA 298 QFWFLAFALTAAANVRTLAL+EVLFAQ VAY S KQP RE+FGI LIV+GVALLIA Sbjct: 241 QFWFLAFALTAAANVRTLALVEVLFAQAVAYFSFKQPLLPRELFGIALIVVGVALLIA 298 >ref|YP_001243352.1| hypothetical protein BBta_7599 [Bradyrhizobium sp. BTAi1] gb|ABQ39446.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 299 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 235/298 (78%), Positives = 258/298 (86%) Query: 1 MLTIASLWIPFTIIAAFGQVARNAMQRHLTGPLGTWGATNIRFLFGLPFSVLFFALAVLL 60 ML++ASLWIPFT++AA GQVARNAMQR LT LGTWGATNIRFLFG PFS++F A +L Sbjct: 1 MLSVASLWIPFTLVAAAGQVARNAMQRSLTAKLGTWGATNIRFLFGFPFSLVFLAAVLLA 60 Query: 61 TGDRVPWPAAAFWPWLLTGALSQIVGTGFMLLAMNDRSFVVTTAYMKTEAIQTAIFGFIF 120 TGD + WP A FWPWLL GALSQIVGTG MLLAM DRSFVVTTAY+KTEAIQTAIFGF+F Sbjct: 61 TGDHLRWPPALFWPWLLLGALSQIVGTGLMLLAMTDRSFVVTTAYLKTEAIQTAIFGFVF 120 Query: 121 LGDHLTTTKVIAIVIATIGVVITALRPGGQKSFADLRPTVLGLGAAAVFAISAVSFRGAI 180 LGD L+ KVIAI+IATIGVVITALRPGG KSFA+L+PTV GL AAA FA+SAV FRGAI Sbjct: 121 LGDPLSLPKVIAILIATIGVVITALRPGGDKSFAELKPTVTGLVAAAAFALSAVGFRGAI 180 Query: 181 IAVPGVSFVTAASYTLMWSLLVQTLILSVYLLLRAPDVLRSILKLWRPSMFAGFMGAFSS 240 I V GVSFVTAAS TL+W L QT IL++YLL RAPD+LR IL LWRPSM AGF+GAF+S Sbjct: 181 INVQGVSFVTAASTTLVWGLFAQTAILTIYLLARAPDILRGILSLWRPSMMAGFIGAFAS 240 Query: 241 QFWFLAFALTAAANVRTLALIEVLFAQGVAYVSLKQPFSLREVFGIVLIVIGVALLIA 298 QFWFLAFALTAAANVRTLAL+EVLFAQGV+Y S KQP SLREV GIVLIV GVALLIA Sbjct: 241 QFWFLAFALTAAANVRTLALVEVLFAQGVSYYSFKQPVSLREVCGIVLIVGGVALLIA 298 >ref|YP_001202757.1| hypothetical protein BRADO0578 [Bradyrhizobium sp. ORS 278] emb|CAL74514.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 299 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 232/298 (77%), Positives = 260/298 (87%) Query: 1 MLTIASLWIPFTIIAAFGQVARNAMQRHLTGPLGTWGATNIRFLFGLPFSVLFFALAVLL 60 ML+I SLWIPFT++AA GQVARNAMQR LT LGTWGATNIRFLFG PFS++F ++ ++ Sbjct: 1 MLSITSLWIPFTLVAAAGQVARNAMQRSLTAKLGTWGATNIRFLFGFPFSLVFLSMVLVA 60 Query: 61 TGDRVPWPAAAFWPWLLTGALSQIVGTGFMLLAMNDRSFVVTTAYMKTEAIQTAIFGFIF 120 TGD +PWP A+FWPWLL GALSQIV TG MLLAM DRSFVVTTAY+KTEAIQTAIFGFIF Sbjct: 61 TGDHLPWPPASFWPWLLLGALSQIVATGLMLLAMTDRSFVVTTAYLKTEAIQTAIFGFIF 120 Query: 121 LGDHLTTTKVIAIVIATIGVVITALRPGGQKSFADLRPTVLGLGAAAVFAISAVSFRGAI 180 LGD L+ K++AI+IATIGVVITALRPGG+KSFA+L+PTV GL AAA FA+SAV +RGAI Sbjct: 121 LGDPLSLPKLVAILIATIGVVITALRPGGEKSFAELKPTVTGLVAAAAFALSAVGYRGAI 180 Query: 181 IAVPGVSFVTAASYTLMWSLLVQTLILSVYLLLRAPDVLRSILKLWRPSMFAGFMGAFSS 240 IAV GVSFVTAAS TL+ L VQT IL+VYLL RAPD+LR IL LWRPSM AGF+GAF+S Sbjct: 181 IAVQGVSFVTAASTTLVAGLFVQTAILTVYLLARAPDILRGILSLWRPSMMAGFVGAFAS 240 Query: 241 QFWFLAFALTAAANVRTLALIEVLFAQGVAYVSLKQPFSLREVFGIVLIVIGVALLIA 298 QFWFLAFALTAAANVRTLALIEVLFAQGV+Y S KQP SLRE+ GI LIV GVALLIA Sbjct: 241 QFWFLAFALTAAANVRTLALIEVLFAQGVSYYSFKQPVSLRELCGIALIVAGVALLIA 298