BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0081.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110] ...   174   5e-42
ref|YP_004106453.1| double-strand break repair helicase AddA [Rh...   172   1e-41
ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit ...   171   3e-41
ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris C...   168   3e-40
ref|YP_001989115.1| double-strand break repair helicase AddA [Rh...   166   1e-39

>ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110]
          Length = 1180

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/119 (78%), Positives = 99/119 (83%)

Query: 1    VLGLIADPRFAAVFAPGSRAEVSIVGRLERPGQPKALVSGQIDRLVVTPTDVLIVDFKTN 60
            VL LIA+PRFA VFA GSRAEV+IVGRLERPG   ALVSGQIDRLVV P +VLIVDFKTN
Sbjct: 1046 VLALIAEPRFAPVFAAGSRAEVAIVGRLERPGLQPALVSGQIDRLVVRPDEVLIVDFKTN 1105

Query: 61   HAPPKTAAEAPRGYVRQLALYRAVLARLYPRLPVRAALLWTETTEIMEISASALVAALA 119
             A PK+A EAP  YVRQLALYRAVLARLYP+ PVRA LLWTE  E MEISA AL AALA
Sbjct: 1106 QAAPKSATEAPAVYVRQLALYRAVLARLYPQKPVRAVLLWTEALEYMEISAPALDAALA 1164


>ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            DX-1]
 gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            DX-1]
          Length = 1161

 Score =  172 bits (436), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 98/119 (82%), Gaps = 1/119 (0%)

Query: 1    VLGLIADPRFAAVFAPGSRAEVSIVGRLERPGQPKALVSGQIDRLVVTPTDVLIVDFKTN 60
            VLGLIAD RFAAVF PGSRAEV IVGRL+R G P  LVSGQIDRLVVT T+VLIVD+KTN
Sbjct: 1039 VLGLIADARFAAVFGPGSRAEVPIVGRLQRRGGP-VLVSGQIDRLVVTETEVLIVDYKTN 1097

Query: 61   HAPPKTAAEAPRGYVRQLALYRAVLARLYPRLPVRAALLWTETTEIMEISASALVAALA 119
            HAPP+  AEAPR YVRQLA YRAVL  +YP+  VRAALLWTE  EIMEISASAL A  A
Sbjct: 1098 HAPPRVEAEAPRAYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMEISASALDAEQA 1156


>ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp.
            BTAi1]
 gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp.
            BTAi1]
          Length = 1156

 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 96/118 (81%)

Query: 1    VLGLIADPRFAAVFAPGSRAEVSIVGRLERPGQPKALVSGQIDRLVVTPTDVLIVDFKTN 60
            VL +I DPRFAAVFAPGSRAEVSIVGRL  PGQP+ALVSGQIDRLVVT ++VLIVDFKTN
Sbjct: 1034 VLAVIQDPRFAAVFAPGSRAEVSIVGRLALPGQPRALVSGQIDRLVVTGSEVLIVDFKTN 1093

Query: 61   HAPPKTAAEAPRGYVRQLALYRAVLARLYPRLPVRAALLWTETTEIMEISASALVAAL 118
              PP   AE P  YVRQLALYRAVL +LYP+  VRAALLWTE  E MEI ASAL A L
Sbjct: 1094 QQPPSDLAEVPPAYVRQLALYRAVLGQLYPQRAVRAALLWTEAPEFMEIPASALDAML 1151


>ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG assignment
            [Rhodopseudomonas palustris CGA009]
          Length = 1161

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 97/119 (81%), Gaps = 1/119 (0%)

Query: 1    VLGLIADPRFAAVFAPGSRAEVSIVGRLERPGQPKALVSGQIDRLVVTPTDVLIVDFKTN 60
            VLGLIAD RFAAVF PGSRAEV IVGRL+  G P  LVSGQIDRLVVT T+VLIVD+KTN
Sbjct: 1039 VLGLIADARFAAVFGPGSRAEVPIVGRLQWRGGP-VLVSGQIDRLVVTETEVLIVDYKTN 1097

Query: 61   HAPPKTAAEAPRGYVRQLALYRAVLARLYPRLPVRAALLWTETTEIMEISASALVAALA 119
            HAPP+  AEAPR YVRQLA YRAVL  +YP+  VRAALLWTE  EIME+SASAL A  A
Sbjct: 1098 HAPPRVEAEAPRSYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMELSASALDAEQA 1156


>ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            TIE-1]
 gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            TIE-1]
          Length = 1161

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 96/119 (80%), Gaps = 1/119 (0%)

Query: 1    VLGLIADPRFAAVFAPGSRAEVSIVGRLERPGQPKALVSGQIDRLVVTPTDVLIVDFKTN 60
            VLGLIAD RFAAVF  GSRAEV IVGRL+  G P  LVSGQIDRLVVT T+VLIVD+KTN
Sbjct: 1039 VLGLIADARFAAVFGSGSRAEVPIVGRLQWRGGP-VLVSGQIDRLVVTETEVLIVDYKTN 1097

Query: 61   HAPPKTAAEAPRGYVRQLALYRAVLARLYPRLPVRAALLWTETTEIMEISASALVAALA 119
            HAPP+  AEAPR YVRQLA YRAVL  +YP+  VRAALLWTE  EIME+SASAL A  A
Sbjct: 1098 HAPPRVEAEAPRSYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMELSASALDAEQA 1156