BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0080.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767391.1| thioredoxin C-1 [Bradyrhizobium japonicum USDA ...   208   2e-52
ref|YP_002287491.1| thioredoxin [Oligotropha carboxidovorans OM5...   207   4e-52
ref|YP_779398.1| thioredoxin [Rhodopseudomonas palustris BisA53]...   207   5e-52
ref|ZP_07026541.1| thioredoxin [Afipia sp. 1NLS2] >gi|298593483|...   205   2e-51
ref|YP_484252.1| thioredoxin [Rhodopseudomonas palustris HaA2] >...   205   2e-51

>ref|NP_767391.1| thioredoxin C-1 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46016.1| thioredoxin C-1 [Bradyrhizobium japonicum USDA 110]
          Length = 106

 Score =  208 bits (530), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/106 (96%), Positives = 104/106 (98%)

Query: 1   MAVGKVSDADFEAEVLKATGPVVVDFWAEWCGPCRMIAPALDEISGAMGDKVKIVKLNVD 60
           MAVGKVSD DFEAEVLKA GPVVVDFWAEWCGPCRMIAPALDEI+GAMGDKVKIVKLNVD
Sbjct: 1   MAVGKVSDTDFEAEVLKANGPVVVDFWAEWCGPCRMIAPALDEIAGAMGDKVKIVKLNVD 60

Query: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWITAAV 106
           ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWIT+AV
Sbjct: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWITSAV 106


>ref|YP_002287491.1| thioredoxin [Oligotropha carboxidovorans OM5]
 ref|YP_004631028.1| thioredoxin TrxA [Oligotropha carboxidovorans OM5]
 gb|ACI91626.1| thioredoxin [Oligotropha carboxidovorans OM5]
 gb|AEI01213.1| thioredoxin TrxA [Oligotropha carboxidovorans OM4]
 gb|AEI04787.1| thioredoxin TrxA [Oligotropha carboxidovorans OM5]
          Length = 106

 Score =  207 bits (527), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/106 (96%), Positives = 104/106 (98%)

Query: 1   MAVGKVSDADFEAEVLKATGPVVVDFWAEWCGPCRMIAPALDEISGAMGDKVKIVKLNVD 60
           M+VGKVSDADFEAEVLKA GPVVVDFWAEWCGPCRMIAPALDEI+GAMGDKVKIVKLNVD
Sbjct: 1   MSVGKVSDADFEAEVLKAEGPVVVDFWAEWCGPCRMIAPALDEIAGAMGDKVKIVKLNVD 60

Query: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWITAAV 106
           ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPK KLQQWITAAV
Sbjct: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKQKLQQWITAAV 106


>ref|YP_779398.1| thioredoxin [Rhodopseudomonas palustris BisA53]
 gb|ABJ04418.1| thioredoxin [Rhodopseudomonas palustris BisA53]
          Length = 106

 Score =  207 bits (527), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 101/106 (95%), Positives = 105/106 (99%)

Query: 1   MAVGKVSDADFEAEVLKATGPVVVDFWAEWCGPCRMIAPALDEISGAMGDKVKIVKLNVD 60
           MAVGKVSDADF++EVL ATGPVVVDFWAEWCGPCRMIAPALDEI+GAMGDKVKIVKLNVD
Sbjct: 1   MAVGKVSDADFDSEVLNATGPVVVDFWAEWCGPCRMIAPALDEIAGAMGDKVKIVKLNVD 60

Query: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWITAAV 106
           ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWI+AAV
Sbjct: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWISAAV 106


>ref|ZP_07026541.1| thioredoxin [Afipia sp. 1NLS2]
 gb|EFI53683.1| thioredoxin [Afipia sp. 1NLS2]
          Length = 106

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/106 (95%), Positives = 102/106 (96%)

Query: 1   MAVGKVSDADFEAEVLKATGPVVVDFWAEWCGPCRMIAPALDEISGAMGDKVKIVKLNVD 60
           M VGKVSD DFEAEVLKA GPVVVDFWAEWCGPCRMIAPALDEI+GAMGDKVKIVKLNVD
Sbjct: 1   MGVGKVSDTDFEAEVLKAEGPVVVDFWAEWCGPCRMIAPALDEIAGAMGDKVKIVKLNVD 60

Query: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWITAAV 106
           ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPK KLQQWITAAV
Sbjct: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKQKLQQWITAAV 106


>ref|YP_484252.1| thioredoxin [Rhodopseudomonas palustris HaA2]
 gb|ABD05341.1| thioredoxin [Rhodopseudomonas palustris HaA2]
          Length = 106

 Score =  205 bits (521), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/106 (95%), Positives = 103/106 (97%)

Query: 1   MAVGKVSDADFEAEVLKATGPVVVDFWAEWCGPCRMIAPALDEISGAMGDKVKIVKLNVD 60
           MAVGKVSDADFEAEVLKA GPVVVDFWAEWCGPCRMIAPALDEISGAMGD VKIVKLNVD
Sbjct: 1   MAVGKVSDADFEAEVLKAQGPVVVDFWAEWCGPCRMIAPALDEISGAMGDTVKIVKLNVD 60

Query: 61  ESPKTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWITAAV 106
           ESP TASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWI++AV
Sbjct: 61  ESPVTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWISSAV 106