BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0074.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628027.1| tryptophan synthase beta chain [Bradyrhizobia... 781 0.0 ref|ZP_07026537.1| tryptophan synthase, beta subunit [Afipia sp.... 777 0.0 ref|NP_767385.1| tryptophan synthase subunit beta [Bradyrhizobiu... 768 0.0 ref|YP_002287487.1| tryptophan synthase, beta subunit [Oligotrop... 768 0.0 ref|YP_530286.1| tryptophan synthase subunit beta [Rhodopseudomo... 763 0.0 >ref|ZP_08628027.1| tryptophan synthase beta chain [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09322.1| tryptophan synthase beta chain [Bradyrhizobiaceae bacterium SG-6C] Length = 405 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/405 (93%), Positives = 389/405 (96%) Query: 1 MNPNLPNSFRSGPDERGHFGIFGGRFVAETLMPLILDLEKAYADAKADPAFQAEMNVYLK 60 MN LPNSFRSGPDERGHFGIFGGR+VAETLMPLILDLEKAYADAKADPAFQ EMN YLK Sbjct: 1 MNLPLPNSFRSGPDERGHFGIFGGRYVAETLMPLILDLEKAYADAKADPAFQKEMNGYLK 60 Query: 61 DYVGRPSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAE 120 DYVGRPSPLYFAERLTEHLGGAKIY KREELNHTGSHKVNNVLGQIMVARRMGKKRIIAE Sbjct: 61 DYVGRPSPLYFAERLTEHLGGAKIYFKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAE 120 Query: 121 TGAGQHGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEMLGAKVVPVQSGARTLKDA 180 TGAGQHGVATATLCARFGLEC+VYMGAVDVERQQPNVIRMEMLGAKVVPVQSG+RTLKDA Sbjct: 121 TGAGQHGVATATLCARFGLECIVYMGAVDVERQQPNVIRMEMLGAKVVPVQSGSRTLKDA 180 Query: 181 MNDALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQSIIGHETRKQMQEAEGRLPDSLIA 240 MNDALRDWVTNV DTFYCIGTVAGPHPYPMMVRDFQSIIG ETR QM EAEGRLPDSL+A Sbjct: 181 MNDALRDWVTNVADTFYCIGTVAGPHPYPMMVRDFQSIIGTETRAQMMEAEGRLPDSLVA 240 Query: 241 CIGGGSNAMGLFHPFLDDPLIEIFGVEAAGHGLTQLHAASLAGGRPGVLHGNRTYLLMDA 300 CIGGGSNAMGLFHPFLDDP +EIFGVEAAGHGLT LHAAS+AGGRPGVLHGNRTYLLMD Sbjct: 241 CIGGGSNAMGLFHPFLDDPSVEIFGVEAAGHGLTNLHAASIAGGRPGVLHGNRTYLLMDD 300 Query: 301 DGQIEEAHSISAGLDYPGIGPEHAWLHETGRVKYLSATDEEALAAFQLLSRLEGIIPALE 360 DGQI++AHSISAGLDYPGIGPEH+WLHETGRV YLSATDEEALAAFQLLSRLEGIIPALE Sbjct: 301 DGQIQDAHSISAGLDYPGIGPEHSWLHETGRVTYLSATDEEALAAFQLLSRLEGIIPALE 360 Query: 361 SAHAIAKLSELAPQRPKDHLMVVNLSGRGDKDVPQVGDILKARKK 405 AHAIAK+ ELAP+RPKDHLMVVNLSGRGDKDVPQVGDILK +KK Sbjct: 361 PAHAIAKVLELAPKRPKDHLMVVNLSGRGDKDVPQVGDILKDKKK 405 >ref|ZP_07026537.1| tryptophan synthase, beta subunit [Afipia sp. 1NLS2] gb|EFI53679.1| tryptophan synthase, beta subunit [Afipia sp. 1NLS2] Length = 405 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/400 (93%), Positives = 384/400 (96%) Query: 6 PNSFRSGPDERGHFGIFGGRFVAETLMPLILDLEKAYADAKADPAFQAEMNVYLKDYVGR 65 PNSFRSGPDERGHFG FGGRFVAETLMPLILDLEKAYA AKADPAFQ EMN YLKDYVGR Sbjct: 6 PNSFRSGPDERGHFGTFGGRFVAETLMPLILDLEKAYAQAKADPAFQKEMNAYLKDYVGR 65 Query: 66 PSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAETGAGQ 125 PSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAETGAGQ Sbjct: 66 PSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAETGAGQ 125 Query: 126 HGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEMLGAKVVPVQSGARTLKDAMNDAL 185 HGVATATLCARFGLEC+VYMGAVDVERQQPNVIRMEMLGAKVVPVQSG RTLKDAMNDAL Sbjct: 126 HGVATATLCARFGLECIVYMGAVDVERQQPNVIRMEMLGAKVVPVQSGTRTLKDAMNDAL 185 Query: 186 RDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQSIIGHETRKQMQEAEGRLPDSLIACIGGG 245 RDWVTNV TFYCIGTVAGPHPYPMMVRDFQS+IG ETR QM EAEGRLPDSL+ACIGGG Sbjct: 186 RDWVTNVATTFYCIGTVAGPHPYPMMVRDFQSVIGVETRAQMMEAEGRLPDSLVACIGGG 245 Query: 246 SNAMGLFHPFLDDPLIEIFGVEAAGHGLTQLHAASLAGGRPGVLHGNRTYLLMDADGQIE 305 SNAMGLFHPFLDDP +EIFGVEAAGHGLT LHAASLAGGRPGVLHGNRTYLLMD DGQI+ Sbjct: 246 SNAMGLFHPFLDDPGVEIFGVEAAGHGLTNLHAASLAGGRPGVLHGNRTYLLMDEDGQIQ 305 Query: 306 EAHSISAGLDYPGIGPEHAWLHETGRVKYLSATDEEALAAFQLLSRLEGIIPALESAHAI 365 +AHSISAGLDYPGIGPEHAWL+ETGRV YLSATDEEALAAFQLLSRLEGIIPALESAHAI Sbjct: 306 DAHSISAGLDYPGIGPEHAWLYETGRVTYLSATDEEALAAFQLLSRLEGIIPALESAHAI 365 Query: 366 AKLSELAPQRPKDHLMVVNLSGRGDKDVPQVGDILKARKK 405 AKLSELAP+RP+DHLMVVNLSGRGDKDVPQVGDIL+ RK Sbjct: 366 AKLSELAPKRPRDHLMVVNLSGRGDKDVPQVGDILRGRKS 405 >ref|NP_767385.1| tryptophan synthase subunit beta [Bradyrhizobium japonicum USDA 110] sp|Q89WE5.1|TRPB_BRAJA RecName: Full=Tryptophan synthase beta chain dbj|BAC46010.1| tryptophan synthase beta subunit [Bradyrhizobium japonicum USDA 110] Length = 405 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/405 (90%), Positives = 387/405 (95%) Query: 1 MNPNLPNSFRSGPDERGHFGIFGGRFVAETLMPLILDLEKAYADAKADPAFQAEMNVYLK 60 MN PNS+RSGPDERGHFGIFGGRFVAETLMPLILDLEKAY AKADPAFQAEMN YLK Sbjct: 1 MNIAKPNSYRSGPDERGHFGIFGGRFVAETLMPLILDLEKAYTAAKADPAFQAEMNGYLK 60 Query: 61 DYVGRPSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAE 120 +YVGRPSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIM+ARRMGKKRIIAE Sbjct: 61 NYVGRPSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMLARRMGKKRIIAE 120 Query: 121 TGAGQHGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEMLGAKVVPVQSGARTLKDA 180 TGAGQHGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEMLGAKVVPVQSG RTLKDA Sbjct: 121 TGAGQHGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEMLGAKVVPVQSGTRTLKDA 180 Query: 181 MNDALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQSIIGHETRKQMQEAEGRLPDSLIA 240 MN+ALRDWVTNVH+TFYCIGTVAGPHPYP +VRDFQSIIG+ET+ QMQE EGRLPDSL+A Sbjct: 181 MNEALRDWVTNVHNTFYCIGTVAGPHPYPTLVRDFQSIIGNETKAQMQEVEGRLPDSLVA 240 Query: 241 CIGGGSNAMGLFHPFLDDPLIEIFGVEAAGHGLTQLHAASLAGGRPGVLHGNRTYLLMDA 300 CIGGGSNAMGLFHPFLDDP +EIFGVEAAGHGLTQLHAAS+AGGRPGVLHGNRTYLLMDA Sbjct: 241 CIGGGSNAMGLFHPFLDDPSVEIFGVEAAGHGLTQLHAASIAGGRPGVLHGNRTYLLMDA 300 Query: 301 DGQIEEAHSISAGLDYPGIGPEHAWLHETGRVKYLSATDEEALAAFQLLSRLEGIIPALE 360 DGQI++AHSISAGLDYPGIGPEH+WLHE GRV YLSATD+EALAAFQLLS+LEGIIPALE Sbjct: 301 DGQIQDAHSISAGLDYPGIGPEHSWLHEIGRVNYLSATDDEALAAFQLLSKLEGIIPALE 360 Query: 361 SAHAIAKLSELAPQRPKDHLMVVNLSGRGDKDVPQVGDILKARKK 405 AHAIAK+ ELAP+R KDHLMVVNLSGRGDKDVPQVGDIL+ + K Sbjct: 361 PAHAIAKVMELAPKRAKDHLMVVNLSGRGDKDVPQVGDILRGKSK 405 >ref|YP_002287487.1| tryptophan synthase, beta subunit [Oligotropha carboxidovorans OM5] ref|YP_004631032.1| tryptophan synthase beta chain TrpB [Oligotropha carboxidovorans OM5] sp|B6JCP2.1|TRPB_OLICO RecName: Full=Tryptophan synthase beta chain gb|ACI91622.1| tryptophan synthase, beta subunit [Oligotropha carboxidovorans OM5] gb|AEI01217.1| tryptophan synthase beta chain TrpB [Oligotropha carboxidovorans OM4] gb|AEI04791.1| tryptophan synthase beta chain TrpB [Oligotropha carboxidovorans OM5] Length = 405 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/400 (91%), Positives = 383/400 (95%) Query: 6 PNSFRSGPDERGHFGIFGGRFVAETLMPLILDLEKAYADAKADPAFQAEMNVYLKDYVGR 65 PNSFR+GPDERGHFG FGGRFVAETLMPLILDLEKAYA AKADP+FQ EMN YLKDYVGR Sbjct: 6 PNSFRAGPDERGHFGTFGGRFVAETLMPLILDLEKAYAAAKADPSFQKEMNGYLKDYVGR 65 Query: 66 PSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAETGAGQ 125 PSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAETGAGQ Sbjct: 66 PSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAETGAGQ 125 Query: 126 HGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEMLGAKVVPVQSGARTLKDAMNDAL 185 HGVATATLCARFGLEC+VYMGAVDV RQ+PNVIRMEMLGAKVVPVQSG RTLKDAMNDAL Sbjct: 126 HGVATATLCARFGLECIVYMGAVDVARQEPNVIRMEMLGAKVVPVQSGTRTLKDAMNDAL 185 Query: 186 RDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQSIIGHETRKQMQEAEGRLPDSLIACIGGG 245 RDWVTNV TFYCIGTVAGPHPYP MVRDFQS+IGHETR+QM AEGRLPDSL+ACIGGG Sbjct: 186 RDWVTNVATTFYCIGTVAGPHPYPAMVRDFQSVIGHETREQMMAAEGRLPDSLVACIGGG 245 Query: 246 SNAMGLFHPFLDDPLIEIFGVEAAGHGLTQLHAASLAGGRPGVLHGNRTYLLMDADGQIE 305 SNAMGLFHPFLD+P +EIFGVEAAGHGLT LHAASLAGGRPGVLHGNRTYLLM+ DGQI+ Sbjct: 246 SNAMGLFHPFLDEPAVEIFGVEAAGHGLTNLHAASLAGGRPGVLHGNRTYLLMNEDGQIQ 305 Query: 306 EAHSISAGLDYPGIGPEHAWLHETGRVKYLSATDEEALAAFQLLSRLEGIIPALESAHAI 365 +AHSISAGLDYPGIGPEHAWLHETGRV YLSATDEEALAAFQLLSRLEGIIPALESAHAI Sbjct: 306 DAHSISAGLDYPGIGPEHAWLHETGRVTYLSATDEEALAAFQLLSRLEGIIPALESAHAI 365 Query: 366 AKLSELAPQRPKDHLMVVNLSGRGDKDVPQVGDILKARKK 405 AKLS+LAP+RP+DHLMVVNLSGRGDKDVPQVGDIL+ RK Sbjct: 366 AKLSQLAPKRPRDHLMVVNLSGRGDKDVPQVGDILRGRKS 405 >ref|YP_530286.1| tryptophan synthase subunit beta [Rhodopseudomonas palustris BisB18] sp|Q21CB9.1|TRPB_RHOPB RecName: Full=Tryptophan synthase beta chain gb|ABD85967.1| tryptophan synthase, beta chain [Rhodopseudomonas palustris BisB18] Length = 404 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/404 (89%), Positives = 384/404 (95%) Query: 1 MNPNLPNSFRSGPDERGHFGIFGGRFVAETLMPLILDLEKAYADAKADPAFQAEMNVYLK 60 M LPNSFRSGPDERGHFGIFGGRFVAETLMPLILDLEKAYA AKADP+FQ EM+ YLK Sbjct: 1 MTTQLPNSFRSGPDERGHFGIFGGRFVAETLMPLILDLEKAYAGAKADPSFQREMDGYLK 60 Query: 61 DYVGRPSPLYFAERLTEHLGGAKIYLKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAE 120 DYVGRPSPLYFAERLT+HLGGAKIY KREELNHTGSHKVNNVLGQIMVARRMGKKRIIAE Sbjct: 61 DYVGRPSPLYFAERLTDHLGGAKIYFKREELNHTGSHKVNNVLGQIMVARRMGKKRIIAE 120 Query: 121 TGAGQHGVATATLCARFGLECVVYMGAVDVERQQPNVIRMEMLGAKVVPVQSGARTLKDA 180 TGAGQHGVATATLCARFGLEC+V+MGAVDVERQQPNVIRM+MLGAKVVPVQSGARTLKDA Sbjct: 121 TGAGQHGVATATLCARFGLECIVFMGAVDVERQQPNVIRMQMLGAKVVPVQSGARTLKDA 180 Query: 181 MNDALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQSIIGHETRKQMQEAEGRLPDSLIA 240 MN+ALRDWVTNV DTFYCIGT AGPHPYPMMVRDFQSIIG ET+ QMQ AEGRLPDSL+A Sbjct: 181 MNEALRDWVTNVSDTFYCIGTAAGPHPYPMMVRDFQSIIGTETKTQMQAAEGRLPDSLVA 240 Query: 241 CIGGGSNAMGLFHPFLDDPLIEIFGVEAAGHGLTQLHAASLAGGRPGVLHGNRTYLLMDA 300 CIGGGSNA+GLFHPFLDDP +EIFGVEAAGHGLTQLHAAS+AGGRPGVLHGNRTYLLMD Sbjct: 241 CIGGGSNALGLFHPFLDDPTVEIFGVEAAGHGLTQLHAASIAGGRPGVLHGNRTYLLMDD 300 Query: 301 DGQIEEAHSISAGLDYPGIGPEHAWLHETGRVKYLSATDEEALAAFQLLSRLEGIIPALE 360 DGQI+E HSISAGLDYPGIGPEH+WLHETGRV YLSATD+EALAAFQLLSRLEGIIPALE Sbjct: 301 DGQIQEGHSISAGLDYPGIGPEHSWLHETGRVTYLSATDDEALAAFQLLSRLEGIIPALE 360 Query: 361 SAHAIAKLSELAPQRPKDHLMVVNLSGRGDKDVPQVGDILKARK 404 AHAIAK+ ELAPQRPKDHLMV+NLSGRGDKD+PQV +IL+ +K Sbjct: 361 PAHAIAKVLELAPQRPKDHLMVINLSGRGDKDIPQVAEILRGQK 404