BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0072.p         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08628025.1| hypothetical protein CSIRO_1095 [Bradyrhizobi...   156   1e-36
ref|YP_779391.1| hypothetical protein RPE_0452 [Rhodopseudomonas...   145   2e-33
ref|YP_575426.1| hypothetical protein Nham_0065 [Nitrobacter ham...   138   3e-31
ref|YP_530288.1| hypothetical protein RPC_0394 [Rhodopseudomonas...   135   2e-30
ref|ZP_01045130.1| hypothetical protein NB311A_08293 [Nitrobacte...   134   5e-30

>ref|ZP_08628025.1| hypothetical protein CSIRO_1095 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP09320.1| hypothetical protein CSIRO_1095 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 133

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/133 (62%), Positives = 99/133 (74%), Gaps = 6/133 (4%)

Query: 1   MRKFFTAVVIIPLGLIFIIFAVANRHWVTVSFDPFNSVTPTVAVTLPLFVVIIASAILGV 60
           +RK F A+VI+PL ++F++FAVANRH VT+SFDPFNS  P + V+LPLFVVIIA A+ GV
Sbjct: 2   LRKIFNALVILPLAILFVVFAVANRHIVTLSFDPFNSSDPALGVSLPLFVVIIAVAMFGV 61

Query: 61  IAGGIGTWFKQGRWRRAARQHEADARHLRAELADLRTA---ASRDEAQRRPA--PALSGF 115
           +AGG+ TWF Q  WRRAARQ EADARH RAELA+LR     A+R E Q  PA  P L+  
Sbjct: 62  VAGGMATWFGQRHWRRAARQQEADARHARAELAELREQTRLAARPEGQ-VPALMPGLTPQ 120

Query: 116 YGAAGRDKQGATL 128
           Y A GRDK GA L
Sbjct: 121 YPAIGRDKYGAAL 133


>ref|YP_779391.1| hypothetical protein RPE_0452 [Rhodopseudomonas palustris BisA53]
 gb|ABJ04411.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 133

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 5/133 (3%)

Query: 1   MRKFFTAVVIIPLGLIFIIFAVANRHWVTVSFDPFNSVTPTVAVTLPLFVVIIASAILGV 60
           M KFFTA+V+IPLGLIF +FAVANRH +TVSFDPF+S  P +AVT+PLFV++IA AILGV
Sbjct: 1   MHKFFTALVLIPLGLIFFVFAVANRHQITVSFDPFSSNDPNLAVTMPLFVMLIAVAILGV 60

Query: 61  IAGGIGTWFKQGRWRRAARQHEADARHLRAELADLRTAASRDEAQRRPAPA-----LSGF 115
           IAG + TW  Q RWR+AAR+++ADA   RA+L  LR +    +A   P  A     L   
Sbjct: 61  IAGSMATWIGQRRWRKAARRNQADAIEARAQLTKLRASVVSPQAAETPRAAPRLLQLGSS 120

Query: 116 YGAAGRDKQGATL 128
             A+ RDKQ A+L
Sbjct: 121 SNASERDKQSASL 133


>ref|YP_575426.1| hypothetical protein Nham_0065 [Nitrobacter hamburgensis X14]
 gb|ABE60966.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 115

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 80/108 (74%)

Query: 1   MRKFFTAVVIIPLGLIFIIFAVANRHWVTVSFDPFNSVTPTVAVTLPLFVVIIASAILGV 60
           MRKF T +V+IPLG++FI+FA ANRH VTV+FDPF++  P   VTLPLFV+IIA AI GV
Sbjct: 1   MRKFLTGLVLIPLGVLFIVFAFANRHLVTVTFDPFDASDPLAGVTLPLFVLIIAVAIFGV 60

Query: 61  IAGGIGTWFKQGRWRRAARQHEADARHLRAELADLRTAASRDEAQRRP 108
           +AG + TWF Q RWR  ARQ+E DAR  R ELADLR+     + QR P
Sbjct: 61  VAGSVATWFGQRRWRHTARQYETDAREARVELADLRSRWESRDTQRLP 108


>ref|YP_530288.1| hypothetical protein RPC_0394 [Rhodopseudomonas palustris BisB18]
 gb|ABD85969.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 130

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 90/130 (69%), Gaps = 2/130 (1%)

Query: 1   MRKFFTAVVIIPLGLIFIIFAVANRHWVTVSFDPFNSVTPTVAVTLPLFVVIIASAILGV 60
           M+KF TA+V+IPLGLI  +FAVANR  VTVS DPF    P +AVT+PLFV++IA AILGV
Sbjct: 1   MQKFLTALVLIPLGLILFVFAVANRQLVTVSLDPFAGNDPELAVTMPLFVLLIAVAILGV 60

Query: 61  IAGGIGTWFKQGRWRRAARQHEADARHLRAELADLRTAASRDEAQRRP-APALSGFYGA- 118
           IAG   TW +Q RWR+AAR+H+A+A   RA+L +LR +     A   P AP L     A 
Sbjct: 61  IAGSSVTWLRQRRWRKAARRHQAEAIEARAQLTELRASVVTQPAAEAPRAPRLLQLGSAN 120

Query: 119 AGRDKQGATL 128
           + RDKQ ATL
Sbjct: 121 SARDKQSATL 130


>ref|ZP_01045130.1| hypothetical protein NB311A_08293 [Nitrobacter sp. Nb-311A]
 gb|EAQ37135.1| hypothetical protein NB311A_08293 [Nitrobacter sp. Nb-311A]
          Length = 115

 Score =  134 bits (337), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 76/108 (70%)

Query: 1   MRKFFTAVVIIPLGLIFIIFAVANRHWVTVSFDPFNSVTPTVAVTLPLFVVIIASAILGV 60
           MRKF T +++IPLG++FI+FA ANRH VTV+FDPF    P   VTLPLF++IIA AI GV
Sbjct: 1   MRKFLTGLILIPLGVLFIVFAFANRHLVTVTFDPFGGNDPGTGVTLPLFILIIAVAIFGV 60

Query: 61  IAGGIGTWFKQGRWRRAARQHEADARHLRAELADLRTAASRDEAQRRP 108
           +AG + TWF Q RWR  ARQ E DAR  R ELADLR+     E  R P
Sbjct: 61  VAGSMATWFGQRRWRHTARQFETDAREARVELADLRSRYESRETSRLP 108