BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0071.p         (109 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_316678.1| integration host factor subunit beta [Nitrobact...   193   8e-48
ref|YP_001236307.1| integration host factor subunit beta [Bradyr...   193   9e-48
ref|ZP_01045129.1| integration host factor beta subunit [Nitroba...   192   2e-47
ref|YP_575427.1| integration host factor subunit beta [Nitrobact...   191   4e-47
ref|NP_767382.1| integration host factor subunit beta [Bradyrhiz...   191   5e-47

>ref|YP_316678.1| integration host factor subunit beta [Nitrobacter winogradskyi
           Nb-255]
 sp|Q3SWL5.1|IHFB_NITWN RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gb|ABA03326.1| integration host factor, beta subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 101

 Score =  193 bits (490), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/101 (95%), Positives = 97/101 (96%), Gaps = 2/101 (1%)

Query: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
           MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRD--VTEAGA 99
           GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRD   +EA A
Sbjct: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRDNATSEANA 101


>ref|YP_001236307.1| integration host factor subunit beta [Bradyrhizobium sp. BTAi1]
 sp|A5E8A7.1|IHFB_BRASB RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gb|ABQ32401.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium sp.
           BTAi1]
          Length = 103

 Score =  193 bits (490), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 97/103 (94%), Positives = 97/103 (94%), Gaps = 1/103 (0%)

Query: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
           MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRDVTEAGAAKVD 103
           GRNPRTG HVPVDQKSVPFFKTGKEMRERLNRD   AGAA  D
Sbjct: 61  GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRD-NPAGAADTD 102


>ref|ZP_01045129.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A]
 gb|EAQ37134.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A]
          Length = 101

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/101 (94%), Positives = 97/101 (96%), Gaps = 2/101 (1%)

Query: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
           MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRD--VTEAGA 99
           GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNR+   +EA A
Sbjct: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRENATSEASA 101


>ref|YP_575427.1| integration host factor subunit beta [Nitrobacter hamburgensis X14]
 sp|Q1QS30.1|IHFB_NITHX RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 gb|ABE60967.1| integration host factor, beta subunit [Nitrobacter hamburgensis
           X14]
          Length = 101

 Score =  191 bits (484), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/101 (93%), Positives = 96/101 (95%), Gaps = 2/101 (1%)

Query: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
           MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIV ALARGDRVELRGFGAFSVKHRPARA
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKHRPARA 60

Query: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRD--VTEAGA 99
           GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNR+   +EA A
Sbjct: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRENATSEASA 101


>ref|NP_767382.1| integration host factor subunit beta [Bradyrhizobium japonicum USDA
           110]
 sp|Q89WE8.1|IHFB_BRAJA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
 dbj|BAC46007.1| integration host factor beta subunit [Bradyrhizobium japonicum USDA
           110]
          Length = 101

 Score =  191 bits (484), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 94/100 (94%), Positives = 96/100 (96%)

Query: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
           MIKSELVQRIAEHNPHLYQRDVENIVNAIL+EIVAALARGDRVELRGFGAFSVKHRPARA
Sbjct: 1   MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60

Query: 61  GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRDVTEAGAA 100
           GRNPRTG HVPVDQKSVPFFKTGKEMRERLNRD  + GAA
Sbjct: 61  GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDHPDPGAA 100