BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0067.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773753.1| hypothetical protein bll7113 [Bradyrhizobium ja... 270 1e-70 ref|YP_576525.1| diguanylate cyclase [Nitrobacter hamburgensis X... 256 2e-66 ref|YP_001242640.1| diguanylate cyclase [Bradyrhizobium sp. BTAi... 247 1e-63 ref|YP_001203351.1| putative diguanylate cyclase [Bradyrhizobium... 235 5e-60 ref|YP_485069.1| diguanylate cyclase [Rhodopseudomonas palustris... 224 6e-57 >ref|NP_773753.1| hypothetical protein bll7113 [Bradyrhizobium japonicum USDA 110] dbj|BAC52378.1| bll7113 [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 137/206 (66%), Positives = 167/206 (81%), Gaps = 4/206 (1%) Query: 34 RAGTKRAGTEASTRGAVASGDKST---IRSLRAQLARAQARIEALQAAAETDFLLDILNR 90 + TKR + RGA G K + IR LR++L A+ R+ L+AAA+TDFLL+I NR Sbjct: 42 KPATKRPA-KPPRRGASLDGTKDSAKIIRGLRSKLKAAERRVAELEAAADTDFLLEIPNR 100 Query: 91 RGFERELARSLSFIKRYQASGALIVLDVDRLKPINDAFGHAAGDEVLKAIVAAISDQVRA 150 RGFEREL R+++++KRY+A+GALIVLDVDRLKPIND+FGHAAGDEVLKAIV A++ QVRA Sbjct: 101 RGFERELTRAIAYMKRYRATGALIVLDVDRLKPINDSFGHAAGDEVLKAIVGALTRQVRA 160 Query: 151 SDVIGRLGGDEFAVLLWNLSEIDARAKAAALEEAIDRLTFMFRDSQVTAGASAGVAILTA 210 SDV+GRLGGDEFA+LLWNL+E DA+AKAAA E+ ID L+F+FR VTAGASAGVA+L A Sbjct: 161 SDVVGRLGGDEFALLLWNLNETDAKAKAAAFEQTIDELSFVFRSQNVTAGASAGVALLGA 220 Query: 211 HSDIDRVLDEADRAMYVRKAQRRHES 236 HSD R L+EAD AMYVRKA+RRHE Sbjct: 221 HSDAGRALEEADAAMYVRKARRRHEP 246 >ref|YP_576525.1| diguanylate cyclase [Nitrobacter hamburgensis X14] gb|ABE62065.1| diguanylate cyclase [Nitrobacter hamburgensis X14] Length = 227 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/233 (60%), Positives = 166/233 (71%), Gaps = 8/233 (3%) Query: 1 MKKKTTAAASGAAKRRKGAPAARKSGPGKTGAKRAGTKRAGTEASTRGAVASGDKSTIRS 60 MKK A S AAKR+ A + + + T + A RGA IR Sbjct: 1 MKKTPKAPTSTAAKRKASRRKAAPAARLAALSPKRQTVQRDVAADARGA--------IRR 52 Query: 61 LRAQLARAQARIEALQAAAETDFLLDILNRRGFERELARSLSFIKRYQASGALIVLDVDR 120 L++QLA AQ RI L+A AETDFLL +LNRRGFEREL RS+++I+RY ASGAL VLDVDR Sbjct: 53 LKSQLAAAQERIADLEAFAETDFLLGVLNRRGFERELRRSVAYIRRYHASGALFVLDVDR 112 Query: 121 LKPINDAFGHAAGDEVLKAIVAAISDQVRASDVIGRLGGDEFAVLLWNLSEIDARAKAAA 180 LKPINDA GHAAGD VLKA+VAA+S VR+SD+IGRLGGDEFA+LLWNLSE DA+AKA+ Sbjct: 113 LKPINDALGHAAGDAVLKAVVAALSRHVRSSDLIGRLGGDEFALLLWNLSETDAKAKASV 172 Query: 181 LEEAIDRLTFMFRDSQVTAGASAGVAILTAHSDIDRVLDEADRAMYVRKAQRR 233 LEE IDRLT FR +TAGAS GVAIL H+D L++AD AMYVRKAQRR Sbjct: 173 LEETIDRLTLTFRGRPITAGASIGVAILGPHADAGTALEQADCAMYVRKAQRR 225 >ref|YP_001242640.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] gb|ABQ38734.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 242 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/180 (70%), Positives = 143/180 (79%) Query: 57 TIRSLRAQLARAQARIEALQAAAETDFLLDILNRRGFERELARSLSFIKRYQASGALIVL 116 +R L+A+LA AQARI L A AE D LLDI NRRGF REL RS++FIKRY A+GALIVL Sbjct: 61 VVRRLKAELAAAQARIAELTALAERDVLLDIFNRRGFARELHRSIAFIKRYDATGALIVL 120 Query: 117 DVDRLKPINDAFGHAAGDEVLKAIVAAISDQVRASDVIGRLGGDEFAVLLWNLSEIDARA 176 DVD LKPIND FGHAAGDEVLKA+ +S+ VR+SDVIGRLGGDEF VLLW+LSE DARA Sbjct: 121 DVDHLKPINDTFGHAAGDEVLKAVAGVLSEVVRSSDVIGRLGGDEFGVLLWHLSEADARA 180 Query: 177 KAAALEEAIDRLTFMFRDSQVTAGASAGVAILTAHSDIDRVLDEADRAMYVRKAQRRHES 236 KAA LE AID L+F F V AGASAGVA+L + R L+EADRAMYVRKAQRRHE+ Sbjct: 181 KAAELEHAIDSLSFTFDGQTVHAGASAGVAVLDRRVNPVRALEEADRAMYVRKAQRRHEA 240 >ref|YP_001203351.1| putative diguanylate cyclase [Bradyrhizobium sp. ORS 278] emb|CAL75114.1| putative diguanylate cyclase (GGDEF) [Bradyrhizobium sp. ORS 278] Length = 164 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 118/162 (72%), Positives = 134/162 (82%) Query: 75 LQAAAETDFLLDILNRRGFERELARSLSFIKRYQASGALIVLDVDRLKPINDAFGHAAGD 134 + A AE DFLLDI NRRGF REL RS++FIKRY A+GAL+VLDVDRLKPIND FGHAAGD Sbjct: 1 MTATAERDFLLDIFNRRGFARELHRSIAFIKRYDATGALVVLDVDRLKPINDTFGHAAGD 60 Query: 135 EVLKAIVAAISDQVRASDVIGRLGGDEFAVLLWNLSEIDARAKAAALEEAIDRLTFMFRD 194 EVLKA+ +S++VR+SDVIGRLGGDEF VLLW+LSE DAR KAAALEEAID L+F F D Sbjct: 61 EVLKAVARVLSEEVRSSDVIGRLGGDEFGVLLWHLSETDARIKAAALEEAIDMLSFTFGD 120 Query: 195 SQVTAGASAGVAILTAHSDIDRVLDEADRAMYVRKAQRRHES 236 V AGASAGVA+L + R L+EADRAMY+RKAQRR ES Sbjct: 121 QTVRAGASAGVALLDKRVNPVRALEEADRAMYIRKAQRRRES 162 >ref|YP_485069.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gb|ABD06158.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 252 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 136/239 (56%), Positives = 164/239 (68%), Gaps = 10/239 (4%) Query: 4 KTTAAASGAAKRRKGAPAARK---------SGPGKTGAKRAGTKRAGTEAST-RGAVASG 53 K T S A R PAAR SGP K +A +A A G + + Sbjct: 2 KKTPPRSPKASRTGHRPAARPVAGKRPLAASGPTKALLVKALPVKAMPRARVGSGRLPAD 61 Query: 54 DKSTIRSLRAQLARAQARIEALQAAAETDFLLDILNRRGFERELARSLSFIKRYQASGAL 113 + IR L+AQLA A A+I+ L+A+AETDFLL I NRRGFERELAR+L++IKRY A GAL Sbjct: 62 AQGKIRRLKAQLAAALAQIDELRASAETDFLLGISNRRGFERELARALAYIKRYGAGGAL 121 Query: 114 IVLDVDRLKPINDAFGHAAGDEVLKAIVAAISDQVRASDVIGRLGGDEFAVLLWNLSEID 173 I+LDVDRLKP+ND +GHAAGD VLKA+V A+ VR+SD+IGRLGGDEFA+LLWNL E D Sbjct: 122 IMLDVDRLKPVNDTYGHAAGDVVLKAVVDALLRHVRSSDLIGRLGGDEFALLLWNLGEAD 181 Query: 174 ARAKAAALEEAIDRLTFMFRDSQVTAGASAGVAILTAHSDIDRVLDEADRAMYVRKAQR 232 AR KAAALE+A+D+L + VTAG SAGVA+LTA D+ L ADRAMY RKA+R Sbjct: 182 ARLKAAALEQAVDQLAIQYGAHTVTAGISAGVAMLTADMDVVEALAVADRAMYARKAER 240