BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0061.p (461 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773747.1| hypothetical protein bll7107 [Bradyrhizobium ja... 534 e-149 ref|YP_576529.1| diguanylate cyclase/phosphodiesterase [Nitrobac... 502 e-140 ref|YP_001242633.1| diguanylate cyclase/phosphodiesterase [Brady... 494 e-137 ref|YP_533800.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 492 e-137 ref|YP_001203356.1| diguanylate cyclase/phosphodiesterase [Brady... 483 e-134 >ref|NP_773747.1| hypothetical protein bll7107 [Bradyrhizobium japonicum USDA 110] dbj|BAC52372.1| bll7107 [Bradyrhizobium japonicum USDA 110] Length = 895 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 274/417 (65%), Positives = 340/417 (81%), Gaps = 2/417 (0%) Query: 1 MAGRKVQAGGKNSIPARAVLCLIAAVAPCAAARAGTGAFAPSSYLGSLDPGVVWELLIGS 60 MA + A I +AV+CL VAP A A A + +FAP S L +LDP ++WE LIG Sbjct: 1 MAEKNWHADSTILIAVQAVVCLAGTVAP-ARAFALSDSFAPPSSLDNLDPNLIWEALIGG 59 Query: 61 VVVASFFGAVGLWILSALRKAKRAQLRRNAFVSSALNHLNQGVVMTDAQERIVFCNDRYL 120 +VV +F A+ LWI SALR+ +R QLRRNAFVSSA+N+LNQGVVMTDAQ R++FCNDRYL Sbjct: 60 IVVCAFLVAIALWIHSALRRTRRLQLRRNAFVSSAMNNLNQGVVMTDAQRRVIFCNDRYL 119 Query: 121 DIYGLSRADIRRNMTGVELLELRRDRGVLD-LSAEDFFARAAAPEGLVTELPGGRSVLVK 179 +IYGLSR+D+ +M G ++LELRR RGVL +S ++F+ +AA+ GL+TELP GR++LVK Sbjct: 120 EIYGLSRSDLWADMNGHDILELRRKRGVLGGVSDKEFYEKAASGNGLITELPDGRAILVK 179 Query: 180 YFPLPNGGSVATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIFANRA 239 YF LPNGGSVATHLD +++R+LSR+LAST QFLE+VLDNVP CVAAKNIEDG YIFAN A Sbjct: 180 YFVLPNGGSVATHLDVSEERRLSRQLASTKQFLETVLDNVPACVAAKNIEDGCYIFANTA 239 Query: 240 FERFSRFSRDHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDKRILA 299 +ERF F+RD +VGK A E+F P +AASI+ D AALN+ +G R+EF V+RG ++R++A Sbjct: 240 YERFWGFTRDQVVGKNARELFAPVSAASIEATDRAALNSPDGQFRNEFEVDRGGERRMVA 299 Query: 300 SNRVIARNEAGEPEFLIALFEDVTDRRSLSRELENNKKFLELVVDNIPVSLIVQRVSDGR 359 S R++ RNE +PEFL+ +FED+TDRRSLS+ELE+ KKFLELVVDNIPV+LIV++V DGR Sbjct: 300 SIRIVVRNENNKPEFLMLVFEDITDRRSLSQELESTKKFLELVVDNIPVALIVEQVKDGR 359 Query: 360 YLLANRSAETILNRRREDAAGLTASDIFNAREAKLIIARDEAAIRKRSMIAEEHPIS 416 YLLANRSAETILNRRRE+A GLTASDIFN +EAKLIIARDEAAI+KR MI EEHPIS Sbjct: 360 YLLANRSAETILNRRREEATGLTASDIFNPKEAKLIIARDEAAIKKRGMITEEHPIS 416 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 1/134 (0%) Query: 194 DCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIFANRAFERFSRFSRDHIVG 253 D TD+R LS++L ST +FLE V+DN+PV + + ++DGRY+ ANR+ E R+ G Sbjct: 321 DITDRRSLSQELESTKKFLELVVDNIPVALIVEQVKDGRYLLANRSAETILNRRREEATG 380 Query: 254 KRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDKRILASNRVIARNEAGEPE 313 A +IF P+ A I D AA+ G E + R+ + R ++AGEP+ Sbjct: 381 LTASDIFNPKEAKLIIARDEAAIKK-RGMITEEHPISTKDGLRLFLTRRATVLSDAGEPQ 439 Query: 314 FLIALFEDVTDRRS 327 +LI EDVTDRR Sbjct: 440 YLIKTHEDVTDRRQ 453 >ref|YP_576529.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis X14] gb|ABE62069.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis X14] Length = 898 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 262/417 (62%), Positives = 317/417 (76%), Gaps = 3/417 (0%) Query: 1 MAGRKVQAGGKN--SIPARAVLCLIAAVAPCAAARAGTGAFAPSSYLGSLDPGVVWELLI 58 M G+ QAGGK S+ A L A A A+A A + +++ D GV WE+ Sbjct: 1 MTGKDWQAGGKGGKSVAAAVGLVYAAVAAAPASAWAAAIGLSTDNHITGTDAGVAWEIFT 60 Query: 59 GSVVVASFFGAVGLWILSALRKAKRAQLRRNAFVSSALNHLNQGVVMTDAQERIVFCNDR 118 G + SF A +W+ S LRKA+R+ LRR+AFVSS LN+LNQGVVMTD+++RI+FCNDR Sbjct: 61 GGFIAVSFLAAAAIWVTSVLRKARRS-LRRHAFVSSGLNNLNQGVVMTDSRQRIIFCNDR 119 Query: 119 YLDIYGLSRADIRRNMTGVELLELRRDRGVLDLSAEDFFARAAAPEGLVTELPGGRSVLV 178 YL+IYGL R+DIR MT EL +LRR RGVLD ++ F+ + A +GL TELP GR + V Sbjct: 120 YLEIYGLLRSDIRPAMTDPELGDLRRARGVLDACSDQFYRLSNACDGLFTELPDGRLIAV 179 Query: 179 KYFPLPNGGSVATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIFANR 238 K F LPNGGSVATH DC++QRKL+R+LA+T QFLESV+DNVPVC+AAK IEDGRYI NR Sbjct: 180 KRFKLPNGGSVATHEDCSEQRKLARQLATTKQFLESVIDNVPVCIAAKGIEDGRYILVNR 239 Query: 239 AFERFSRFSRDHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDKRIL 298 AFERFSR SRD IVG+RADEIF+P+TAA+I D AL + + ++ SE ERGS+KR L Sbjct: 240 AFERFSRVSRDFIVGRRADEIFQPQTAANIAATDQVALASPDSHYYSEMVFERGSEKRTL 299 Query: 299 ASNRVIARNEAGEPEFLIALFEDVTDRRSLSRELENNKKFLELVVDNIPVSLIVQRVSDG 358 A+N+V+ARNEAG+P FLIALFEDVT+R+SLSRELEN KKFLE VVDNIPVSLIVQ SDG Sbjct: 300 ANNKVVARNEAGQPVFLIALFEDVTERKSLSRELENAKKFLETVVDNIPVSLIVQCASDG 359 Query: 359 RYLLANRSAETILNRRREDAAGLTASDIFNAREAKLIIARDEAAIRKRSMIAEEHPI 415 YLLANR AETILNRRREDA GLTASDIF R+AKLI+ARDE A+ ++ EEHPI Sbjct: 360 HYLLANRRAETILNRRREDAIGLTASDIFGPRDAKLIVARDEMAVGNGGLLTEEHPI 416 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 1/139 (0%) Query: 189 VATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIFANRAFERFSRFSR 248 +A D T+++ LSR+L + +FLE+V+DN+PV + + DG Y+ ANR E R Sbjct: 317 IALFEDVTERKSLSRELENAKKFLETVVDNIPVSLIVQCASDGHYLLANRRAETILNRRR 376 Query: 249 DHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDKRILASNRVIARNE 308 + +G A +IF P A I D A+ G E + R+ + RV R + Sbjct: 377 EDAIGLTASDIFGPRDAKLIVARDEMAVGNG-GLLTEEHPIRTSEGLRLFLTRRVTVRGD 435 Query: 309 AGEPEFLIALFEDVTDRRS 327 GEP++LI EDVTDRR Sbjct: 436 DGEPQYLIKTNEDVTDRRQ 454 >ref|YP_001242633.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gb|ABQ38727.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 902 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 254/421 (60%), Positives = 323/421 (76%), Gaps = 5/421 (1%) Query: 1 MAGRKVQAGGKNSIPARAVLCLIAAVAPCAAARAGTGA-----FAPSSYLGSLDPGVVWE 55 MAG+ QA +N+ PAR V +A +A AA F+PSS++G ++P V+W+ Sbjct: 1 MAGKNWQASSRNAFPARVVAAAMAVMAALEAASPACAWAAPADFSPSSFVGVVEPDVLWK 60 Query: 56 LLIGSVVVASFFGAVGLWILSALRKAKRAQLRRNAFVSSALNHLNQGVVMTDAQERIVFC 115 +LI +VV +F +V +WI S+LR+ KRAQLRRNAFVSSALN+L+QG+++TD+ R+VF Sbjct: 61 VLIAGIVVCAFLASVVIWIHSSLRRTKRAQLRRNAFVSSALNNLSQGLMLTDSANRVVFY 120 Query: 116 NDRYLDIYGLSRADIRRNMTGVELLELRRDRGVLDLSAEDFFARAAAPEGLVTELPGGRS 175 N R+L+IYG++RADI TG +L+ELRR RG+L LS ED+ +A P+G +T+LP GR+ Sbjct: 121 NRRFLEIYGMTRADIPPGCTGRDLVELRRQRGLLALSVEDYARKAREPDGCLTDLPDGRA 180 Query: 176 VLVKYFPLPNGGSVATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIF 235 V K F LP GGS+ H DCT QR+L +LAST QFLESV+D VP CV AKNIEDGRYIF Sbjct: 181 VRAKIFRLPTGGSIGIHEDCTVQRRLEDELASTKQFLESVVDQVPACVVAKNIEDGRYIF 240 Query: 236 ANRAFERFSRFSRDHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDK 295 ANRAFERF+R SRD I+GKR ++F ETAA+I AD AA+ A +RSE V+RG +K Sbjct: 241 ANRAFERFARVSRDRIIGKRPGDLFGEETAANITQADRAAMLAPGTTYRSELVVQRGDEK 300 Query: 296 RILASNRVIARNEAGEPEFLIALFEDVTDRRSLSRELENNKKFLELVVDNIPVSLIVQRV 355 RIL S+RV+ARN+ EP+FLIALF+D T+RRSLS+ELE+ KKFLEL+VDNIPVSLIV+ Sbjct: 301 RILESHRVVARNDKNEPQFLIALFDDATERRSLSQELESTKKFLELIVDNIPVSLIVESA 360 Query: 356 SDGRYLLANRSAETILNRRREDAAGLTASDIFNAREAKLIIARDEAAIRKRSMIAEEHPI 415 DGRYLLANRSAE ILNR+REDA GLT +DIFN REA+LI+ARDEAAI+KR ++ EEHPI Sbjct: 361 GDGRYLLANRSAEIILNRKREDATGLTTADIFNPREARLIMARDEAAIKKRGVLTEEHPI 420 Query: 416 S 416 S Sbjct: 421 S 421 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 1/139 (0%) Query: 189 VATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIFANRAFERFSRFSR 248 +A D T++R LS++L ST +FLE ++DN+PV + ++ DGRY+ ANR+ E R Sbjct: 321 IALFDDATERRSLSQELESTKKFLELIVDNIPVSLIVESAGDGRYLLANRSAEIILNRKR 380 Query: 249 DHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDKRILASNRVIARNE 308 + G +IF P A I D AA+ G E + R+ + R + Sbjct: 381 EDATGLTTADIFNPREARLIMARDEAAIKK-RGVLTEEHPISTKDGLRLFLTRRATVLGD 439 Query: 309 AGEPEFLIALFEDVTDRRS 327 GEP++LI +EDVTDRR Sbjct: 440 GGEPQYLIKTYEDVTDRRQ 458 >ref|YP_533800.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gb|ABD89481.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 895 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 247/416 (59%), Positives = 301/416 (72%), Gaps = 1/416 (0%) Query: 1 MAGRKVQAGGKNSIPARAVLCLIAAVAPCAAARAGTGAFAPSSYLGSLDPGVVWELLIGS 60 MAG Q GG + V CL+A A AARAG AP+ YLGS D ++WELLIG Sbjct: 1 MAGNNWQVGGVTKLAVSVVGCLVATAATSGAARAGF-ELAPTRYLGSFDAEILWELLIGG 59 Query: 61 VVVASFFGAVGLWILSALRKAKRAQLRRNAFVSSALNHLNQGVVMTDAQERIVFCNDRYL 120 V SF +V +W +S+LR+ RA RR FVSSALN LNQGVVM DA +++FCNDRYL Sbjct: 60 FVAVSFLASVAIWAMSSLRRISRAHHRRGLFVSSALNSLNQGVVMVDALGKVMFCNDRYL 119 Query: 121 DIYGLSRADIRRNMTGVELLELRRDRGVLDLSAEDFFARAAAPEGLVTELPGGRSVLVKY 180 +IYGL R+DI NMTG+ELLELRR RG+LD++ E+F+ A+ P G + +LP GRSVLVK+ Sbjct: 120 EIYGLRRSDIVPNMTGLELLELRRSRGMLDVATEEFYRTASGPNGHIADLPNGRSVLVKF 179 Query: 181 FPLPNGGSVATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIFANRAF 240 L NGGS+ATH DCT QR+LSR+LA+ QFLESV+DN+PVCVAAK IEDGRYI ANRAF Sbjct: 180 SNLANGGSIATHDDCTPQRELSRQLATAKQFLESVIDNIPVCVAAKAIEDGRYILANRAF 239 Query: 241 ERFSRFSRDHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDKRILAS 300 ERF RD I+G+R E+F TAA+I AD A+++ R E V+ G R++ + Sbjct: 240 ERFCGLPRDRILGRRTAELFSAATAATIGEADRMAIDSPHDPLRGELTVDVGGGDRVIDN 299 Query: 301 NRVIARNEAGEPEFLIALFEDVTDRRSLSRELENNKKFLELVVDNIPVSLIVQRVSDGRY 360 N V+A ++ PEFLIALFED+T+RRSLS+EL N KKFLELVVDNIP+SL VQ DGRY Sbjct: 300 NCVVACDDKNRPEFLIALFEDITERRSLSQELVNTKKFLELVVDNIPISLTVQSTQDGRY 359 Query: 361 LLANRSAETILNRRREDAAGLTASDIFNAREAKLIIARDEAAIRKRSMIAEEHPIS 416 L ANR AE ILNR REDA GL+A DIFN +EAKLI RD AIR+R ++ EEHPIS Sbjct: 360 LFANRGAEAILNRCREDAVGLSALDIFNPKEAKLIAERDANAIRRRDLMTEEHPIS 415 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 1/144 (0%) Query: 189 VATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIFANRAFERFSRFSR 248 +A D T++R LS++L +T +FLE V+DN+P+ + ++ +DGRY+FANR E R Sbjct: 315 IALFEDITERRSLSQELVNTKKFLELVVDNIPISLTVQSTQDGRYLFANRGAEAILNRCR 374 Query: 249 DHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDKRILASNRVIARNE 308 + VG A +IF P+ A I D A+ + E + R+ + RV + Sbjct: 375 EDAVGLSALDIFNPKEAKLIAERDANAIRRRD-LMTEEHPISTKDGLRLFLTRRVTVVDG 433 Query: 309 AGEPEFLIALFEDVTDRRSLSREL 332 G P++LI ED+TDRR ++ Sbjct: 434 EGAPQYLIKTHEDITDRRQTEAQM 457 >ref|YP_001203356.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. ORS 278] emb|CAL75119.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains precursor [Bradyrhizobium sp. ORS 278] Length = 903 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 256/422 (60%), Positives = 321/422 (76%), Gaps = 7/422 (1%) Query: 1 MAGRKVQAGGKNSIPARAVL------CLIAAVAPCAAARAGTGAFAPSSYLGSLDPGVVW 54 MAG QA +N+ R V L+ + +A AG F+ SSY+G+++P V+W Sbjct: 2 MAGNVWQASDRNAFRTRVVAAARAATMLLTGGSSTSAWAAGPD-FSVSSYVGAVEPDVLW 60 Query: 55 ELLIGSVVVASFFGAVGLWILSALRKAKRAQLRRNAFVSSALNHLNQGVVMTDAQERIVF 114 +++IG +VV +F +V +WI SALR+ KRAQLRRNAF+SSALN+L+QG++MTDA +VF Sbjct: 61 KVVIGGIVVCAFLASVLIWIHSALRRTKRAQLRRNAFISSALNNLSQGLMMTDASGHVVF 120 Query: 115 CNDRYLDIYGLSRADIRRNMTGVELLELRRDRGVLDLSAEDFFARAAAPEGLVTELPGGR 174 N R+L+IYG++R DI TG +L+ELRR RG+L LS +D+ +A PEG +TELP GR Sbjct: 121 YNRRFLEIYGMNRGDISPGCTGRDLVELRRQRGLLKLSVDDYARQAREPEGSLTELPDGR 180 Query: 175 SVLVKYFPLPNGGSVATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYI 234 +V K F LP GGS+ H +CT+QR+L R+LAST QFLESV+D VPVCVAAKNI+DGRYI Sbjct: 181 AVRAKIFRLPTGGSIGIHEECTEQRRLERELASTKQFLESVVDQVPVCVAAKNIDDGRYI 240 Query: 235 FANRAFERFSRFSRDHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSD 294 FANRAFE+F++ RD I+GKR ++F ETAA I AD AA+ A HRSE V+RG D Sbjct: 241 FANRAFEQFAKMPRDRIIGKRPSDLFGDETAADIAAADRAAMLAPGTTHRSELVVKRGDD 300 Query: 295 KRILASNRVIARNEAGEPEFLIALFEDVTDRRSLSRELENNKKFLELVVDNIPVSLIVQR 354 KRIL ++RV+ARN+ E +FLIALF+D T+RRSLS ELE KKFLELVVDNIPVSLIV+ Sbjct: 301 KRILEAHRVVARNDKNEAQFLIALFDDATERRSLSLELEKTKKFLELVVDNIPVSLIVES 360 Query: 355 VSDGRYLLANRSAETILNRRREDAAGLTASDIFNAREAKLIIARDEAAIRKRSMIAEEHP 414 DGRYLLANRSAE ILNR+REDA GLTA+DIFN REA+LIIARDEAAIRKRS++ EEHP Sbjct: 361 ARDGRYLLANRSAEVILNRKREDATGLTAADIFNPREARLIIARDEAAIRKRSLMTEEHP 420 Query: 415 IS 416 IS Sbjct: 421 IS 422 Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 1/139 (0%) Query: 189 VATHLDCTDQRKLSRKLASTTQFLESVLDNVPVCVAAKNIEDGRYIFANRAFERFSRFSR 248 +A D T++R LS +L T +FLE V+DN+PV + ++ DGRY+ ANR+ E R Sbjct: 322 IALFDDATERRSLSLELEKTKKFLELVVDNIPVSLIVESARDGRYLLANRSAEVILNRKR 381 Query: 249 DHIVGKRADEIFRPETAASIDTADHAALNAAEGYHRSEFFVERGSDKRILASNRVIARNE 308 + G A +IF P A I D AA+ E + R+ + RV + Sbjct: 382 EDATGLTAADIFNPREARLIIARDEAAIRK-RSLMTEEHPISTKDGLRLFLTRRVTVMGD 440 Query: 309 AGEPEFLIALFEDVTDRRS 327 A EP++LI +EDVTDRR Sbjct: 441 ADEPQYLIKTYEDVTDRRQ 459