BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0057.p         (67 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001206100.1| hypothetical protein BRADO4123 [Bradyrhizobi...    78   4e-13
ref|YP_001240437.1| hypothetical protein BBta_4499 [Bradyrhizobi...    74   6e-12
ref|YP_578544.1| hypothetical protein Nham_3353 [Nitrobacter ham...    59   2e-07
ref|ZP_01047231.1| hypothetical protein NB311A_19622 [Nitrobacte...    54   9e-06

>ref|YP_001206100.1| hypothetical protein BRADO4123 [Bradyrhizobium sp. ORS 278]
 emb|CAL77875.1| hypothetical protein BRADO4123 [Bradyrhizobium sp. ORS 278]
          Length = 70

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 48/63 (76%)

Query: 3  DNPFAEFSLERAIDLRWTLRDIQAGRLKLSPVSDEDLHILAELGLVELHDDEPGLTEAGA 62
          D+P A+ +LE+AI LRWTLRDI+A RL LSPVSD+DL +L E GLV L D  P LT+AG 
Sbjct: 7  DDPLADLALEKAIHLRWTLRDIKANRLTLSPVSDDDLALLTERGLVALSDGVPTLTDAGQ 66

Query: 63 DVL 65
          D +
Sbjct: 67 DAI 69


>ref|YP_001240437.1| hypothetical protein BBta_4499 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36531.1| hypothetical protein BBta_4499 [Bradyrhizobium sp. BTAi1]
          Length = 70

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 47/64 (73%)

Query: 3  DNPFAEFSLERAIDLRWTLRDIQAGRLKLSPVSDEDLHILAELGLVELHDDEPGLTEAGA 62
          D+P A+  LE+AI LRWTLRDI+  RL LSPV+DED+ +L   GLVE+ D  P LTEAG 
Sbjct: 7  DDPLADLDLEKAIHLRWTLRDIKGRRLALSPVADEDIALLTARGLVEVSDGVPRLTEAGH 66

Query: 63 DVLS 66
          D ++
Sbjct: 67 DAIT 70


>ref|YP_578544.1| hypothetical protein Nham_3353 [Nitrobacter hamburgensis X14]
 gb|ABE64084.1| hypothetical protein Nham_3353 [Nitrobacter hamburgensis X14]
          Length = 89

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 43/62 (69%)

Query: 4  NPFAEFSLERAIDLRWTLRDIQAGRLKLSPVSDEDLHILAELGLVELHDDEPGLTEAGAD 63
          NP  + +L+ AI LRW LRDI+AGR+KL+  + +DL +L + GL+ + + +P LT+A   
Sbjct: 27 NPLHDLNLDTAIRLRWVLRDIRAGRVKLTAPASDDLALLGQRGLITMDNGQPILTDAANS 86

Query: 64 VL 65
          V+
Sbjct: 87 VI 88


>ref|ZP_01047231.1| hypothetical protein NB311A_19622 [Nitrobacter sp. Nb-311A]
 gb|EAQ34813.1| hypothetical protein NB311A_19622 [Nitrobacter sp. Nb-311A]
          Length = 80

 Score = 53.9 bits (128), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 3  DNPFAEFS------LERAIDLRWTLRDIQAGRLKLSPVSDEDLHILAELGLVELHDDEPG 56
          D P AE S      ++ AI LRW LRDI+AGR KL   S +DL +LAE GL+ +++D   
Sbjct: 8  DQPSAEPSSLHHLPVDTAIRLRWVLRDIRAGRTKLLAPSSDDLRLLAERGLISVNNDRLV 67

Query: 57 LTEAGADVL 65
          LT+A   V+
Sbjct: 68 LTDAAISVI 76