BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0054.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241669.1| transcriptional regulator [Bradyrhizobium sp... 576 e-162 ref|YP_756811.1| transcriptional regulator [Maricaulis maris MCS... 331 8e-89 ref|ZP_07775992.1| transcriptional regulator, AraC family [Pseud... 317 2e-84 ref|ZP_07026860.1| transcriptional regulator, AraC family [Afipi... 310 2e-82 ref|YP_347568.1| transcriptional regulator [Pseudomonas fluoresc... 308 9e-82 >ref|YP_001241669.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ37763.1| transcriptional regulator, AraC family with amidase-like domain [Bradyrhizobium sp. BTAi1] Length = 338 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 282/338 (83%), Positives = 303/338 (89%) Query: 1 MPSKTAKAPRPEPRDKKATRRIAIVAFPGVTLLDISGPAQVFAELEAIELPGPDYSLSYL 60 MPS +AK+ R RR+ IVAFPGVTLLD+SGPAQVFAEL IELP P Y+LSY+ Sbjct: 1 MPSNSAKSRRAALPPDATERRLVIVAFPGVTLLDVSGPAQVFAELADIELPRPGYALSYV 60 Query: 61 STSGGLVPTDVGMMIDTAPIDGIAPAEVDTLVIPGGPGIWKIRNDAKLMNWIAEALPKAR 120 S GGLVPTDVG+MIDTAP+ I P EVDTL+IPGGPGIWK+R D LM WI +ALP AR Sbjct: 61 SKHGGLVPTDVGLMIDTAPMTAIDPREVDTLLIPGGPGIWKLRQDEALMRWIGQALPDAR 120 Query: 121 RIASVCLGAFALAWTGILDGKRAATHWRYCPRLQDSFPNIRVEPNAIFVKDGRVWSSAGV 180 RIASVCLGAFALAW G L+GKRAATHWRYCPRLQDSFPN++VEP+AIFV+DGRVWSSAGV Sbjct: 121 RIASVCLGAFALAWAGALEGKRAATHWRYCPRLQDSFPNVKVEPDAIFVQDGRVWSSAGV 180 Query: 181 SAGIDLALAMIEEDFGHTIALDVARRLVVFLKRPGGQSQFSTVLAAQASDVEGRFSALHA 240 SAGIDLALAMIEEDFGHTIALDVARRLVVFLKRPGGQSQFSTVLAAQASDVEGRFSALHA Sbjct: 181 SAGIDLALAMIEEDFGHTIALDVARRLVVFLKRPGGQSQFSTVLAAQASDVEGRFSALHA 240 Query: 241 WIIENITSDLKVETLAEKAGMTPRTFARTYVSRTGMTPASGVEALRVETARLLLESRQIG 300 WIIENI SDL+VETLA KAGM+PRTFARTYVSRTGMTPA GVEALRVETARLLLESRQ+G Sbjct: 241 WIIENIASDLRVETLAAKAGMSPRTFARTYVSRTGMTPAQGVEALRVETARLLLESRQVG 300 Query: 301 GVVEVAKRAGFGDDERMRRAFLRHLGVSPTEYRNRFSG 338 VVEVA+RAGFGDDERMRRAFLRHLGVSP+EYR RFSG Sbjct: 301 SVVEVAQRAGFGDDERMRRAFLRHLGVSPSEYRRRFSG 338 >ref|YP_756811.1| transcriptional regulator [Maricaulis maris MCS10] gb|ABI65873.1| transcriptional regulator, AraC family with amidase-like domain [Maricaulis maris MCS10] Length = 335 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 166/322 (51%), Positives = 220/322 (68%), Gaps = 2/322 (0%) Query: 16 KKATRRIAIVAFPGVTLLDISGPAQVFAELEAIELPGPDYSLSYLSTSGGLVPTDVGMMI 75 ++ R +A V F GV LLD++GP QVF + L YS S GG V TD G+++ Sbjct: 9 EQIERCVAFVTFAGVKLLDVTGPLQVFQDANTF-LGRTAYSTPIASYYGGPVETDAGVLL 67 Query: 76 DTAPIDGIAPAEVDTLVIPGGPGIWKIRNDAKLMNWIAEALPKARRIASVCLGAFALAWT 135 +T + GI E DTL+I GG G++ DA+L+ I ++ K+ RIAS C GAF L Sbjct: 68 NTRRLAGIGLDEDDTLMIAGGAGVFPACRDARLVQAIQKSAEKSGRIASTCTGAFLLGAA 127 Query: 136 GILDGKRAATHWRYCPRLQDSFPNIRVEPNAIFVKDGRVWSSAGVSAGIDLALAMIEEDF 195 G+L+GKRA THWR+C RL + P V+P+ IFV+DGRVW+SAGV+AGIDLALAM+E D Sbjct: 128 GLLEGKRAVTHWRHCERLAEDCPGTEVDPDPIFVEDGRVWTSAGVTAGIDLALAMVERDH 187 Query: 196 GHTIALDVARRLVVFLKRPGGQSQFSTVLAAQASDVEGRFSALHAWIIENITSDLKVETL 255 G +AL++AR L+V++KRPGGQSQFS L Q GRF ALH W+ +N+ +DLKVE+L Sbjct: 188 GRELALELARSLLVYVKRPGGQSQFSEALKQQKRSATGRFDALHFWMKDNLVADLKVESL 247 Query: 256 AEKAGMTPRTFARTYVSRTGMTPASGVEALRVETARLLLESRQIGGVVEVAKRAGFGDDE 315 AE++GM+PR FAR Y TGMTPA VE RV+ AR +LE+ + + VA + GFG+DE Sbjct: 248 AERSGMSPRNFARLYTDDTGMTPARAVEQFRVDAARAMLENPNV-SIKTVASQTGFGNDE 306 Query: 316 RMRRAFLRHLGVSPTEYRNRFS 337 RMRR+F R LGV+P YR+RF+ Sbjct: 307 RMRRSFARLLGVTPQAYRDRFA 328 >ref|ZP_07775992.1| transcriptional regulator, AraC family [Pseudomonas fluorescens WH6] gb|EFQ62866.1| transcriptional regulator, AraC family [Pseudomonas fluorescens WH6] Length = 331 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 165/322 (51%), Positives = 218/322 (67%), Gaps = 6/322 (1%) Query: 20 RRIAIVAFPGVTLLDISGPAQVF-AELEAIELPG-PDYSLSYLSTSGGLVPTDVGMMIDT 77 R + +A+P + LLD++G VF A +A+ G P Y + S +GGL+PT G+ +DT Sbjct: 11 RTLVFLAYPQMGLLDLTGAQTVFWAATKAMAERGLPGYFVHTASLAGGLMPTAEGLSVDT 70 Query: 78 APIDGIAPAEVDTLVIPGGPGIWK-IRNDAKLMNWIAEALPKARRIASVCLGAFALAWTG 136 P+ PA +DTL++PG P I + + + L++W+ A +ARR ASVC G F LA G Sbjct: 71 VPLATFDPATLDTLIVPGAPAIQEAMAANTDLVDWLRHASTRARRTASVCSGTFLLAQAG 130 Query: 137 ILDGKRAATHWRYCPRLQDSFPNIRVEPNAIFVKDGRVWSSAGVSAGIDLALAMIEEDFG 196 +L G+RAATHW C L+ FP+I V+ +AIF++ G VW+SAGVSAGIDLALA++E D G Sbjct: 131 LLQGRRAATHWAMCDMLKRGFPSIEVDMDAIFIQQGNVWTSAGVSAGIDLALALVEADCG 190 Query: 197 HTIALDVARRLVVFLKRPGGQSQFSTVLAAQASDVEGRFSALHAWIIENIT-SDLKVETL 255 +AL VAR LVVFLKRPGGQ+QFS +L AQ D G F ALH WI +N++ SDL VE L Sbjct: 191 RHVALQVARELVVFLKRPGGQAQFSQLLQAQTDDTAG-FDALHLWIADNLSDSDLTVERL 249 Query: 256 AEKAGMTPRTFARTYVSRTGMTPASGVEALRVETARLLLESRQIGGVVEVAKRAGFGDDE 315 AE++ M+PR FAR Y +TG TPA +E R+E AR LLE Q + +VA+ GFGD+E Sbjct: 250 AEQSRMSPRNFARVYKQKTGRTPAKAIELFRMEAARRLLEDSQ-RNIDQVAQLCGFGDEE 308 Query: 316 RMRRAFLRHLGVSPTEYRNRFS 337 RMR F RHL +SP +YR RFS Sbjct: 309 RMRYTFHRHLSISPRDYRERFS 330 >ref|ZP_07026860.1| transcriptional regulator, AraC family [Afipia sp. 1NLS2] gb|EFI51703.1| transcriptional regulator, AraC family [Afipia sp. 1NLS2] Length = 329 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/329 (49%), Positives = 212/329 (64%), Gaps = 7/329 (2%) Query: 12 EPRDKKATRRIAIVAFPGVTLLDISGPAQVFAELEAIELP---GPDYSLSYLSTSGGLVP 68 PR RRI I+AFPGV LLD++GP QVFA I Y L ++ G V Sbjct: 4 NPRFPPKPRRIEILAFPGVQLLDVAGPLQVFATANVIATKSGGAAPYDLQVVAPKGATVT 63 Query: 69 TDVGMMIDTAPIDGIAPAEVDTLVIPGGPGIWKIRNDAKLMNWIAEALPKARRIASVCLG 128 T G+ + TAP+ A + +DTL++ GG G+ K D L+ W+ +ARR+ASVC G Sbjct: 64 TSAGLGLVTAPLPR-ARSTLDTLLVAGGAGVRKASTDKALVKWVQGRAAQARRVASVCTG 122 Query: 129 AFALAWTGILDGKRAATHWRYCPRLQDSFPNIRVEPNAIFVKDGRVWSSAGVSAGIDLAL 188 AF L G+LDGKRA THW C L FP I VEP+ IFV+DG VWSSAG++AGIDLAL Sbjct: 123 AFLLGAAGLLDGKRAVTHWTECKELARRFPAIHVEPDPIFVQDGAVWSSAGITAGIDLAL 182 Query: 189 AMIEEDFGHTIALDVARRLVVFLKRPGGQSQFSTVLAAQASDVEGRFSALHAWIIENITS 248 A++E+D G +AL VAR LV+FLKRPGGQ+QFS L+ Q++ E RF LH W+ ++ Sbjct: 183 ALVEQDIGREMALAVARHLVMFLKRPGGQAQFSVALSLQSA--EDRFGTLHHWMSHHVGG 240 Query: 249 DLKVETLAEKAGMTPRTFARTYVSRTGMTPASGVEALRVETARLLLESRQIGGVVEVAKR 308 DL + LA++AGM+ R+F+R YV TG TPA VE LRVE AR LL ++ V +A R Sbjct: 241 DLSLPVLAQQAGMSERSFSRRYVEATGQTPARAVERLRVEAARRLLSDTRL-PVKRIAAR 299 Query: 309 AGFGDDERMRRAFLRHLGVSPTEYRNRFS 337 GFG +E MRR+F+R L +P +YR RFS Sbjct: 300 CGFGSEETMRRSFVRTLAATPQDYRARFS 328 >ref|YP_347568.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA73579.1| putative AraC-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 327 Score = 308 bits (789), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 164/325 (50%), Positives = 214/325 (65%), Gaps = 13/325 (4%) Query: 20 RRIAIVAFPGVTLLDISGPAQVFAELEAIE----LPGPDYSLSYLSTSGGLVPTDVGMMI 75 + I ++AF V LLD++GP QVFA I LP P Y+ + +++ GG V + G+ + Sbjct: 3 KTIHVLAFANVQLLDVTGPLQVFASANDIARQQGLPAP-YAPTVIASGGGAVNSSAGLAM 61 Query: 76 DTAPIDGIAPAE-VDTLVIPGGPGIWKIRNDAKLMNWIAEALPKARRIASVCLGAFALAW 134 P+ P + DTL+I GG G++ DA L+NW+ E RR+ASVC GAF LA Sbjct: 62 LAEPL----PKQPSDTLIIAGGWGVYAAAEDAGLVNWVREHANGCRRVASVCTGAFLLAA 117 Query: 135 TGILDGKRAATHWRYCPRLQDSFPNIRVEPNAIFVKDGRVWSSAGVSAGIDLALAMIEED 194 +G LDG+R THW C +L P ++VEPN IF+ DG VW+SAGV+AGIDLALAM+E+D Sbjct: 118 SGWLDGRRVVTHWTRCEQLAQQHPQLKVEPNPIFINDGPVWTSAGVTAGIDLALAMVEDD 177 Query: 195 FGHTIALDVARRLVVFLKRPGGQSQFSTVLAAQASDVEGRFSALHAWIIENITSDLKVET 254 G +ALDVAR+LVVFLKRPGGQSQFS L+ Q RF LHAWI E++T DL + T Sbjct: 178 LGRDMALDVARQLVVFLKRPGGQSQFSVTLSLQKQG--NRFDDLHAWIAEHLTRDLGIPT 235 Query: 255 LAEKAGMTPRTFARTYVSRTGMTPASGVEALRVETARLLLESRQIGGVVEVAKRAGFGDD 314 LAE+AGM+ R+F R Y + TG TPA +E +RVETAR LL + + VA GFG + Sbjct: 236 LAEQAGMSERSFVRHYRADTGQTPARAIELIRVETARRLLSDTGL-PIKRVAANCGFGSE 294 Query: 315 ERMRRAFLRHLGVSPTEYRNRFSGS 339 E +RR+FLR +GV+P YR RFS S Sbjct: 295 ETLRRSFLRAIGVTPQAYRERFSVS 319