BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0047.p (419 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772737.1| hypothetical protein bll6097 [Bradyrhizobium ja... 684 0.0 ref|YP_001241617.1| putative formyl-coenzyme A transferase [Brad... 584 e-165 ref|YP_001207211.1| putative Formyl-coenzyme A transferase [Brad... 582 e-164 ref|YP_587680.1| Formyl-coenzyme A transferase [Cupriavidus meta... 412 e-113 ref|ZP_03546226.1| L-carnitine dehydratase/bile acid-inducible p... 393 e-107 >ref|NP_772737.1| hypothetical protein bll6097 [Bradyrhizobium japonicum USDA 110] dbj|BAC51362.1| bll6097 [Bradyrhizobium japonicum USDA 110] Length = 452 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/412 (80%), Positives = 359/412 (87%) Query: 2 TRPELPGRAPRGEGVPTALDGLLVVDFTRVVAGPACTQTLADFGAEVIKIENPDGGDDTR 61 T+P+LP R+ R G PTALDGLLVVDFTRVVAGPACTQTLADFGA VIKIENPDGGDDTR Sbjct: 35 TKPQLPERSSRVAGGPTALDGLLVVDFTRVVAGPACTQTLADFGARVIKIENPDGGDDTR 94 Query: 62 AYEHAEIGGESAAYLSLNRNKRGIALDFNNPAALEVARALIAKADVVVENFSGGVMKKFG 121 AYEHAE GGESAAYLSLNRNKRGIALD P A E+A LI KADVVVENFS GVMKKFG Sbjct: 95 AYEHAETGGESAAYLSLNRNKRGIALDLAVPEAREIALDLIRKADVVVENFSSGVMKKFG 154 Query: 122 LDYASVAPTNPRLIYCSISAYGRKGDFALRPGFDPITQAESGFMSLNGFPDGEPVRTGPP 181 LDY +VAP N RL+YCSISAYGR G FA RPGFDPITQAESGFMSLNGF DG PVRTGPP Sbjct: 155 LDYEAVAPLNSRLVYCSISAYGRTGPFASRPGFDPITQAESGFMSLNGFADGPPVRTGPP 214 Query: 182 IVDMATGMSACNAILLALIARDRLGRGQQVEVALIDTAVSMTGFYGMAYLINGNNPGRFG 241 IVD+ATGM+ACNAILLAL+ARDR GRGQ VEVAL D A++MT FYGMAYLING NPGRFG Sbjct: 215 IVDIATGMTACNAILLALLARDRFGRGQHVEVALFDIAMAMTSFYGMAYLINGENPGRFG 274 Query: 242 NSPNGSPTVGVYRASDGPLYMACANDRLYRRLVTDVLERPDLVTDPEFAHRKARTANKEK 301 NSP+GSPTVGVY ASDGPLYMACANDRLYRRLV +VL RPDL+TDP+FA RKAR+ NKE Sbjct: 275 NSPSGSPTVGVYEASDGPLYMACANDRLYRRLVVEVLNRPDLITDPQFATRKARSENKEL 334 Query: 302 LRAIIASVFAGDTLENWMAKMKKANIPVGYLRTVEEGFNAPEVRDRHRLSKIAHPTAGSV 361 LRA IA VFA DTLENWMAKMK ANIPVGYLRTVEEGFNAPE RDRHRLS+I HPTA V Sbjct: 335 LRAAIAEVFASDTLENWMAKMKLANIPVGYLRTVEEGFNAPEARDRHRLSRIPHPTADWV 394 Query: 362 PNIESPVNMSLTPSVDPVAAPLLGQHTKDVLSKTLGYDDRRIAALAEAGAFG 413 PNIE+P++MSLT ++DPVAAPLLG+HT++VL TLGYD RRI L + G FG Sbjct: 395 PNIETPISMSLTGAIDPVAAPLLGEHTENVLRDTLGYDQRRITELTQRGVFG 446 >ref|YP_001241617.1| putative formyl-coenzyme A transferase [Bradyrhizobium sp. BTAi1] gb|ABQ37711.1| putative Formyl-coenzyme A transferase (Formyl-CoA transferase [Bradyrhizobium sp. BTAi1] Length = 422 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 286/408 (70%), Positives = 330/408 (80%) Query: 6 LPGRAPRGEGVPTALDGLLVVDFTRVVAGPACTQTLADFGAEVIKIENPDGGDDTRAYEH 65 LP RAPR P AL GL V+DFTRVVAGPACTQTL DFGAEVIKIE P GDDTRAYE+ Sbjct: 7 LPDRAPRPTDAPAALAGLRVIDFTRVVAGPACTQTLGDFGAEVIKIEQPVTGDDTRAYEY 66 Query: 66 AEIGGESAAYLSLNRNKRGIALDFNNPAALEVARALIAKADVVVENFSGGVMKKFGLDYA 125 AE+GGESAA+LSLNRNKRG+ LD EVARALIAKADVVVENFS VMKKFGLDY Sbjct: 67 AELGGESAAFLSLNRNKRGVVLDLTVRQGQEVARALIAKADVVVENFSSSVMKKFGLDYP 126 Query: 126 SVAPTNPRLIYCSISAYGRKGDFALRPGFDPITQAESGFMSLNGFPDGEPVRTGPPIVDM 185 +V+ NP LIYCSISAYGR G A R GFDPITQAESGFMSLNGF DG PVRTGPPIVD+ Sbjct: 127 AVSGINPGLIYCSISAYGRHGPLAWRSGFDPITQAESGFMSLNGFADGPPVRTGPPIVDL 186 Query: 186 ATGMSACNAILLALIARDRLGRGQQVEVALIDTAVSMTGFYGMAYLINGNNPGRFGNSPN 245 ATGMSACNAILLAL AR RLGRGQ VEVAL D A++MTGF+GMAYL+NG NP R GNSPN Sbjct: 187 ATGMSACNAILLALAARQRLGRGQHVEVALFDVALAMTGFFGMAYLMNGVNPSRTGNSPN 246 Query: 246 GSPTVGVYRASDGPLYMACANDRLYRRLVTDVLERPDLVTDPEFAHRKARTANKEKLRAI 305 SPTVGV+ ASDGPLY+ACANDRLYRRLVT+VL RPDL++DP FA R+AR N+ +LR I Sbjct: 247 DSPTVGVFEASDGPLYVACANDRLYRRLVTEVLGRPDLLSDPRFATRRARWINRAQLRGI 306 Query: 306 IASVFAGDTLENWMAKMKKANIPVGYLRTVEEGFNAPEVRDRHRLSKIAHPTAGSVPNIE 365 IA + A ++ W+++M +A +PVG +RTVE+ F+APEVR+R R+ I HPTA ++PNIE Sbjct: 307 IADIMATTEMDVWISRMNQAGVPVGRVRTVEQAFHAPEVRERDRVCHIPHPTASAIPNIE 366 Query: 366 SPVNMSLTPSVDPVAAPLLGQHTKDVLSKTLGYDDRRIAALAEAGAFG 413 P++M LTP+VDP AAP LG+HT VL TLG+ ++ + L +AGAFG Sbjct: 367 PPISMQLTPAVDPRAAPRLGEHTAAVLRDTLGHSEQDLERLRQAGAFG 414 >ref|YP_001207211.1| putative Formyl-coenzyme A transferase [Bradyrhizobium sp. ORS 278] emb|CAL78994.1| putative Formyl-coenzyme A transferase (Formyl-CoA transferase; carnitine dehydratase) [Bradyrhizobium sp. ORS 278] Length = 427 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 284/408 (69%), Positives = 328/408 (80%) Query: 6 LPGRAPRGEGVPTALDGLLVVDFTRVVAGPACTQTLADFGAEVIKIENPDGGDDTRAYEH 65 L R PR P AL GLLV+DFTRVVAGPACTQTLADFGAEVIKIE P GDDTRAYEH Sbjct: 7 LQDRNPRPADAPAALAGLLVIDFTRVVAGPACTQTLADFGAEVIKIEQPIKGDDTRAYEH 66 Query: 66 AEIGGESAAYLSLNRNKRGIALDFNNPAALEVARALIAKADVVVENFSGGVMKKFGLDYA 125 AE+GGESAA+LSLNRNK+G+ LD P A +ARALIAKADVVVENFS VM+K GLDY Sbjct: 67 AELGGESAAFLSLNRNKQGMVLDLTTPEARNIARALIAKADVVVENFSSHVMEKHGLDYP 126 Query: 126 SVAPTNPRLIYCSISAYGRKGDFALRPGFDPITQAESGFMSLNGFPDGEPVRTGPPIVDM 185 +V+ NP LIYCSISAYGR G FA R GFDPITQAESGFMSLNGFPDG PVRTGPPIVD Sbjct: 127 TVSSANPSLIYCSISAYGRTGPFAWRSGFDPITQAESGFMSLNGFPDGPPVRTGPPIVDF 186 Query: 186 ATGMSACNAILLALIARDRLGRGQQVEVALIDTAVSMTGFYGMAYLINGNNPGRFGNSPN 245 ATGMSACNAILLAL AR RLGRGQ VEVAL DTA+++TGF GMAYL++G NP R GNSPN Sbjct: 187 ATGMSACNAILLALAARQRLGRGQHVEVALFDTALALTGFSGMAYLMSGVNPTRTGNSPN 246 Query: 246 GSPTVGVYRASDGPLYMACANDRLYRRLVTDVLERPDLVTDPEFAHRKARTANKEKLRAI 305 SPTVGV+ ASDGPLY+ACANDRLY RLV +VLERPDL++DP FA RKAR +N+ +LR I Sbjct: 247 DSPTVGVFEASDGPLYVACANDRLYHRLVAEVLERPDLLSDPRFATRKARWSNRAQLRGI 306 Query: 306 IASVFAGDTLENWMAKMKKANIPVGYLRTVEEGFNAPEVRDRHRLSKIAHPTAGSVPNIE 365 +A +FA +E W+++M A +PVG +RTV + F APEVR+R+R+ +I H TAG+VPNIE Sbjct: 307 LADIFAAKQMEVWISRMNDAGVPVGRVRTVAQAFGAPEVRERNRICRIPHMTAGAVPNIE 366 Query: 366 SPVNMSLTPSVDPVAAPLLGQHTKDVLSKTLGYDDRRIAALAEAGAFG 413 ++M +TP+V P AAP LG+HT VL LGY ++ I AL + GAFG Sbjct: 367 PAISMQMTPAVTPRAAPRLGEHTATVLRDRLGYSEQEIEALRDRGAFG 414 >ref|YP_587680.1| Formyl-coenzyme A transferase [Cupriavidus metallidurans CH34] gb|ABF12411.1| putative Formyl-coenzyme A transferase (Formyl-CoA transferase; carnitine dehydratase) [Cupriavidus metallidurans CH34] Length = 429 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 213/413 (51%), Positives = 275/413 (66%), Gaps = 5/413 (1%) Query: 5 ELPGRAPRGEGVPTALDGLLVVDFTRVVAGPACTQTLADFGAEVIKIENPDGGDDTRAYE 64 + P PR PTALDGL VVDFT +AGP T LAD GA+VIKIE P GDD R Y Sbjct: 8 DFPPHVPRPADAPTALDGLRVVDFTHFIAGPFATMMLADMGADVIKIEAPGRGDDFRQYP 67 Query: 65 --HAEIGGESAAYLSLNRNKRGIALDFNNPAALEVARALIAKADVVVENFSGGVMKKFGL 122 H+++G + A +L NRNKR IA+D P L+VAR LIA ADVVVENFS GVM++FGL Sbjct: 68 PVHSDLG-QGAPFLWSNRNKRSIAIDLKTPEGLDVARELIASADVVVENFSTGVMERFGL 126 Query: 123 DYASVAPTNPRLIYCSISAYGRKGDFALRPGFDPITQAESGFMSLNGFPDGEPVRTGPPI 182 DYA+ NPRL+YCS+SAYGR G FA R GFDPI QAESGF+S+NG+ D E VR P+ Sbjct: 127 DYATCKADNPRLVYCSVSAYGRTGAFADRLGFDPIAQAESGFVSMNGYSDREGVRALSPV 186 Query: 183 VDMATGMSACNAILLALIARDRLGRGQQVEVALIDTAVSMTGFYGMAYLINGNNPGRFGN 242 +D++T M ACNAIL AL+AR++ G+GQ VE+AL D AV MTG+ M YL +G +P R GN Sbjct: 187 MDISTAMMACNAILGALLAREKSGKGQAVEIALFDNAVLMTGYAPMQYLFSGADPQRHGN 246 Query: 243 -SPNGSPTVGVYRASDGPLYMACANDRLYRRLVTDVLERPDLVTDPEFAHRKARTANKEK 301 SP+ P+ GV++A D Y+ N+ +++RL+T V+ RP+L DP +A R A +++ Sbjct: 247 TSPDTCPS-GVFKAKDKSFYINSGNNGIFQRLMTQVIGRPELAADPNYATGDLRRARRDE 305 Query: 302 LRAIIASVFAGDTLENWMAKMKKANIPVGYLRTVEEGFNAPEVRDRHRLSKIAHPTAGSV 361 L I+ + FA +W M+ A IP G LR+V + +PE R+ +S+I HP G V Sbjct: 306 LFEILGNAFAEHPWSHWQGLMRAAGIPSGELRSVGDAIRSPEARESRIVSRIPHPKVGWV 365 Query: 362 PNIESPVNMSLTPSVDPVAAPLLGQHTKDVLSKTLGYDDRRIAALAEAGAFGK 414 PNI SP+ S TP VDP AP +G+HT +VL LGYDD ++ L AG GK Sbjct: 366 PNIASPIRYSDTPMVDPTPAPAVGEHTLEVLRDVLGYDDDKVEGLRRAGGLGK 418 >ref|ZP_03546226.1| L-carnitine dehydratase/bile acid-inducible protein F [Comamonas testosteroni KF-1] gb|EED70512.1| L-carnitine dehydratase/bile acid-inducible protein F [Comamonas testosteroni KF-1] Length = 422 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 203/412 (49%), Positives = 263/412 (63%), Gaps = 4/412 (0%) Query: 5 ELPGRAPRGEGVPTALDGLLVVDFTRVVAGPACTQTLADFGAEVIKIENPDGGDDTRAY- 63 +LP PR P AL G+ VVDF+ +AGP T LADFGA+VIKIE P GDD R Y Sbjct: 10 KLPLPTPRPADAPKALAGIRVVDFSHFIAGPYATMMLADFGADVIKIETPAKGDDFRHYP 69 Query: 64 -EHAEIGGESAAYLSLNRNKRGIALDFNNPAALEVARALIAKADVVVENFSGGVMKKFGL 122 ++ + ++ NRNKR +ALD NPAAL V R LIA+ADV+VENFS GVM++FGL Sbjct: 70 PTDPDMPAQGGSFFFTNRNKRSVALDLKNPAALAVVRELIAQADVLVENFSTGVMQRFGL 129 Query: 123 DYASVAPTNPRLIYCSISAYGRKGDFALRPGFDPITQAESGFMSLNGFPDGEPVRTGPPI 182 D + NPRL+YCS+ AY R+G+FA RPGFDP+ QAESGFMS+NG D + VR P+ Sbjct: 130 DPDTCLKLNPRLVYCSVPAYSREGEFADRPGFDPVVQAESGFMSMNGHADRDGVRALSPV 189 Query: 183 VDMATGMSACNAILLALIARDRLGRGQQVEVALIDTAVSMTGFYGMAYLINGNNPGRFGN 242 +DM T + N +L AL+AR G+GQ EV+L DT+++M + M YL G P R GN Sbjct: 190 MDMGTSLMVSNTVLAALMARHTTGKGQYCEVSLFDTSMAMLAYAPMQYLFAGMEPQRNGN 249 Query: 243 -SPNGSPTVGVYRASDGPLYMACANDRLYRRLVTDVLERPDLVTDPEFAHRKARTANKEK 301 SP+ SP+ GV+ +D Y+ NDR++ RLV VLERPD+V DP F HR R ++ + Sbjct: 250 VSPDTSPS-GVFHCTDASFYVNSGNDRIFERLVGGVLERPDVVADPRFNHRAGRIKHRAE 308 Query: 302 LRAIIASVFAGDTLENWMAKMKKANIPVGYLRTVEEGFNAPEVRDRHRLSKIAHPTAGSV 361 L I+ FA +W K + A +P G +RTV + + EV R L++I HP AG V Sbjct: 309 LFPILEKAFADKPWAHWRDKFRAAGVPSGEVRTVPQALASAEVAARGLLTRIPHPVAGWV 368 Query: 362 PNIESPVNMSLTPSVDPVAAPLLGQHTKDVLSKTLGYDDRRIAALAEAGAFG 413 PN+ P + TP VDPVAAP LGQHT +VL + LGY ++A L AGAFG Sbjct: 369 PNLTPPTRLKDTPVVDPVAAPALGQHTDEVLIEVLGYGADKLAQLRTAGAFG 420