BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0041.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772776.1| hypothetical protein blr6136 [Bradyrhizobium ja...   144   5e-33
ref|YP_001241683.1| hypothetical protein BBta_5833 [Bradyrhizobi...   132   2e-29
ref|YP_001207238.1| hypothetical protein BRADO5341 [Bradyrhizobi...   131   3e-29

>ref|NP_772776.1| hypothetical protein blr6136 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51401.1| blr6136 [Bradyrhizobium japonicum USDA 110]
          Length = 103

 Score =  144 bits (363), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 79/89 (88%)

Query: 1   MQYFVVMIDYGRRGREAIVDPEMTRRDVVSRIASGEYTNISFIHEIAERSVEDVTDDLLA 60
           MQYFVVMIDYGRRGREA+VDPE+TRR+V+SR+ASGEY NISFIHEIAE SVEDVTD +LA
Sbjct: 13  MQYFVVMIDYGRRGREAVVDPEITRREVISRVASGEYRNISFIHEIAENSVEDVTDAILA 72

Query: 61  EAALPKLPLTGANLRANTLDHARDLRKHE 89
           EA LP +P    +L+A+ LDHARDLRKHE
Sbjct: 73  EATLPHVPPGDVDLQASRLDHARDLRKHE 101


>ref|YP_001241683.1| hypothetical protein BBta_5833 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37777.1| hypothetical protein BBta_5833 [Bradyrhizobium sp. BTAi1]
          Length = 103

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 77/91 (84%)

Query: 1  MQYFVVMIDYGRRGREAIVDPEMTRRDVVSRIASGEYTNISFIHEIAERSVEDVTDDLLA 60
          MQYFVVMIDYGRRGREA+VDPEMTRR+V++R+ASGE+ NISFIHEI + +VED+T D++A
Sbjct: 1  MQYFVVMIDYGRRGREAVVDPEMTRREVIARVASGEFANISFIHEIRDHAVEDITADVMA 60

Query: 61 EAALPKLPLTGANLRANTLDHARDLRKHEPV 91
          +AA+P+L     +++A   DH RDLRKHE V
Sbjct: 61 QAAVPELDEATIDMQAAQFDHRRDLRKHEQV 91


>ref|YP_001207238.1| hypothetical protein BRADO5341 [Bradyrhizobium sp. ORS 278]
 emb|CAL79021.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 91

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 75/89 (84%)

Query: 1  MQYFVVMIDYGRRGREAIVDPEMTRRDVVSRIASGEYTNISFIHEIAERSVEDVTDDLLA 60
          MQYFVVMIDYGRRGREA+VDP++TRRDVV+RIASGEY NISFIHEIA  SV D+T DLL+
Sbjct: 1  MQYFVVMIDYGRRGREAVVDPDLTRRDVVARIASGEYDNISFIHEIAGHSVADITADLLS 60

Query: 61 EAALPKLPLTGANLRANTLDHARDLRKHE 89
          EA  P++  + A+L+A   DH RDLRKHE
Sbjct: 61 EARPPEIDTSDADLQAGRSDHMRDLRKHE 89