BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0031.p         (47 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769824.1| ABC transporter permease protein [Bradyrhizobiu...    87   7e-16
ref|YP_004417802.1| ABC transporter permease protein [Pusillimon...    60   8e-08
ref|YP_002498644.1| inner-membrane translocator [Methylobacteriu...    57   8e-07
ref|ZP_02191985.1| ABC transporter permease protein [alpha prote...    52   2e-05
ref|YP_530903.1| inner-membrane translocator [Rhodopseudomonas p...    47   0.001

>ref|NP_769824.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC48449.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
          Length = 300

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 46/47 (97%)

Query: 1   LIGALLIGLIRSFGSLGFPLFTEGLMYLFMVIVLVSRPTGLFGKEVA 47
           LIGALLIGLIRSFGSLGFPLFTEGLMYLFMVIVLVS+PTGLFGKE A
Sbjct: 254 LIGALLIGLIRSFGSLGFPLFTEGLMYLFMVIVLVSKPTGLFGKEAA 300


>ref|YP_004417802.1| ABC transporter permease protein [Pusillimonas sp. T7-7]
 gb|AEC21178.1| ABC transporter permease protein [Pusillimonas sp. T7-7]
          Length = 300

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 39/45 (86%)

Query: 1   LIGALLIGLIRSFGSLGFPLFTEGLMYLFMVIVLVSRPTGLFGKE 45
           L+GAL+IG++RSFGS+GFP F EGLM++ MV++LV RP GL G++
Sbjct: 254 LVGALVIGMVRSFGSIGFPDFVEGLMFVAMVLILVLRPGGLMGRK 298


>ref|YP_002498644.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060]
 gb|ACL58341.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060]
          Length = 300

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query: 2   IGALLIGLIRSFGSLGFPLFTEGLMYLFMVIVLVSRPTGLFGKEVA 47
           I ALLIG  R+FG++GFPLF +G+M+  M +VL+ +P+GL G+E A
Sbjct: 255 IAALLIGFTRAFGAIGFPLFVDGMMFAMMALVLIVKPSGLLGREAA 300


>ref|ZP_02191985.1| ABC transporter permease protein [alpha proteobacterium BAL199]
 gb|EDP61275.1| ABC transporter permease protein [alpha proteobacterium BAL199]
          Length = 312

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 34/43 (79%)

Query: 2   IGALLIGLIRSFGSLGFPLFTEGLMYLFMVIVLVSRPTGLFGK 44
           + A+++GL RS GS+GFPLF +G M++ M +VL+ RPTGL G+
Sbjct: 266 LAAIILGLTRSIGSVGFPLFVDGAMFMIMALVLIFRPTGLLGQ 308


>ref|YP_530903.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18]
 gb|ABD86584.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18]
          Length = 286

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 32/45 (71%)

Query: 1   LIGALLIGLIRSFGSLGFPLFTEGLMYLFMVIVLVSRPTGLFGKE 45
           LIG+LLIGL  +FG +  P F+  ++Y  M +VLV+RP GLFG+ 
Sbjct: 242 LIGSLLIGLADAFGKVFLPQFSSIVIYALMALVLVARPAGLFGRS 286