BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0030.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769824.1| ABC transporter permease protein [Bradyrhizobiu... 417 e-114 ref|YP_004417802.1| ABC transporter permease protein [Pusillimon... 306 2e-81 ref|ZP_02191985.1| ABC transporter permease protein [alpha prote... 285 4e-75 ref|YP_002498644.1| inner-membrane translocator [Methylobacteriu... 280 2e-73 ref|YP_547839.1| inner-membrane translocator [Polaromonas sp. JS... 177 1e-42 >ref|NP_769824.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48449.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 300 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 232/248 (93%), Positives = 239/248 (96%) Query: 2 DLDALASCLASPACLVTQTTSGLIIGMLLFLVAVGLTLIFGVLKVVNFSHGAFYMFGAYF 61 DLDALA CL+S ACLVTQTTSGLIIGMLLFLVAVGLTLIFGVLKVVNFSHGAFYMFGAYF Sbjct: 2 DLDALAGCLSSSACLVTQTTSGLIIGMLLFLVAVGLTLIFGVLKVVNFSHGAFYMFGAYF 61 Query: 62 AMTAYQLAGSFALAMLSGAVGTAILGLIFERVFMSRVYGRDVLMQLLVCYAFVLIFDDVV 121 AMTAY L SFALAML+GA GTAILGLIFERVFMSRVYG DVLMQLLVCYAFVLIFDDVV Sbjct: 62 AMTAYHLTDSFALAMLAGAGGTAILGLIFERVFMSRVYGADVLMQLLVCYAFVLIFDDVV 121 Query: 122 RMIWGPEFKSMGMPAAFQVPPLFIAGGVVPPYYLLLIGVALAAAVVLGLGLARSRIGKVI 181 R+IWGPEFKSMGMPAAFQV PLFIAGGVVPPYYLLLIGVAL AA+VLG+GL+RSRIGKVI Sbjct: 122 RIIWGPEFKSMGMPAAFQVMPLFIAGGVVPPYYLLLIGVALVAAIVLGIGLSRSRIGKVI 181 Query: 182 RAAAHNPGMVSALGINTGLIYGGVFALGGMLAGLAGALAAPVRSLTPGMGFSVLIESFIV 241 RAAAHNPGMVSALGINTGLIYGGVFALGGMLAGLAGALAAPVRSLTPGMGFSVLIESFIV Sbjct: 182 RAAAHNPGMVSALGINTGLIYGGVFALGGMLAGLAGALAAPVRSLTPGMGFSVLIESFIV 241 Query: 242 TVIGGMGA 249 TVIGGMG+ Sbjct: 242 TVIGGMGS 249 >ref|YP_004417802.1| ABC transporter permease protein [Pusillimonas sp. T7-7] gb|AEC21178.1| ABC transporter permease protein [Pusillimonas sp. T7-7] Length = 300 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 163/246 (66%), Positives = 201/246 (81%) Query: 4 DALASCLASPACLVTQTTSGLIIGMLLFLVAVGLTLIFGVLKVVNFSHGAFYMFGAYFAM 63 L C+ S +C+VTQT++GLI+G LLFLVA GLTLIFGVL V+NF+HG+ YM GAY + Sbjct: 4 QELFECVTSLSCIVTQTSTGLIVGALLFLVAAGLTLIFGVLGVINFAHGSLYMLGAYMGL 63 Query: 64 TAYQLAGSFALAMLSGAVGTAILGLIFERVFMSRVYGRDVLMQLLVCYAFVLIFDDVVRM 123 TAY++ S+ LA++ +G AI ++FER+FM RVY DVLMQLLVCYAF+LI DDVV++ Sbjct: 64 TAYRVFDSYFLAVIMAGLGVAIFSVLFERLFMRRVYNADVLMQLLVCYAFILILDDVVKL 123 Query: 124 IWGPEFKSMGMPAAFQVPPLFIAGGVVPPYYLLLIGVALAAAVVLGLGLARSRIGKVIRA 183 +WG EF+SMGMP FQ+PPLFI GG+VP +YL+L+GVA AVVL L +R GKV+RA Sbjct: 124 VWGAEFQSMGMPETFQLPPLFIGGGIVPVFYLVLMGVAALIAVVLWYVLKHTRTGKVVRA 183 Query: 184 AAHNPGMVSALGINTGLIYGGVFALGGMLAGLAGALAAPVRSLTPGMGFSVLIESFIVTV 243 AAHNP M SALG+NT LIY GVFA GG+LAG+AGALAAPVRS++PGMGFS+LIESFIVTV Sbjct: 184 AAHNPTMTSALGLNTQLIYAGVFACGGLLAGMAGALAAPVRSMSPGMGFSILIESFIVTV 243 Query: 244 IGGMGA 249 IGGMG+ Sbjct: 244 IGGMGS 249 >ref|ZP_02191985.1| ABC transporter permease protein [alpha proteobacterium BAL199] gb|EDP61275.1| ABC transporter permease protein [alpha proteobacterium BAL199] Length = 312 Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 158/253 (62%), Positives = 206/253 (81%), Gaps = 8/253 (3%) Query: 1 VDLDALASCLASPACLVTQTTSGLIIGMLLFLVAVGLTLIFGVLKVVNFSHGAFYMFGAY 60 ++LDALA+CL++PACLV QTTSGLIIGMLLFLVA G+TLIFGVL V+NF+HG+FYM GAY Sbjct: 12 LELDALAACLSTPACLVNQTTSGLIIGMLLFLVASGVTLIFGVLHVINFAHGSFYMLGAY 71 Query: 61 FAMTAYQLAGSFALAMLSGAVGTAILGLIFERVFMSRVYGRDVLMQLLVCYAFVLIFDDV 120 FA T YQ+ G++ LA +GA+G AI G++FER +SRVYG+++LMQLLVCYAF+LI DD+ Sbjct: 72 FAFTVYQVTGNYFLAAAAGALGAAISGIVFERFIISRVYGQNLLMQLLVCYAFILIIDDL 131 Query: 121 VRMIWGPEFKSMGMPAAFQVPPLFIAGGVVPPYYLLLIGVALAAAVVLGLG----LARSR 176 V+++WG E+ +MG+PA F++PP +AGG VPP+YL L+ A AV++G+G + ++R Sbjct: 132 VKIVWGAEYLAMGIPAEFRLPPYRVAGGYVPPFYLFLV----AMAVLIGIGSLLIVTKTR 187 Query: 177 IGKVIRAAAHNPGMVSALGINTGLIYGGVFALGGMLAGLAGALAAPVRSLTPGMGFSVLI 236 GK++RAAA N MVSALGI + + +F LG LAG+AGALAAPVRSLTPGMG +L+ Sbjct: 188 FGKIVRAAAQNAPMVSALGIRVNVYFALLFGLGCALAGVAGALAAPVRSLTPGMGLGILV 247 Query: 237 ESFIVTVIGGMGA 249 ESFIVTVIGGMG+ Sbjct: 248 ESFIVTVIGGMGS 260 >ref|YP_002498644.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060] gb|ACL58341.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060] Length = 300 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 165/249 (66%), Positives = 210/249 (84%) Query: 1 VDLDALASCLASPACLVTQTTSGLIIGMLLFLVAVGLTLIFGVLKVVNFSHGAFYMFGAY 60 ++L+ALA+CL+S AC VTQ ++GLI+GMLLFLV GL+LIFGVL ++NF+HGAFYM GAY Sbjct: 1 MNLEALAACLSSAACAVTQVSTGLIVGMLLFLVTSGLSLIFGVLGIINFTHGAFYMLGAY 60 Query: 61 FAMTAYQLAGSFALAMLSGAVGTAILGLIFERVFMSRVYGRDVLMQLLVCYAFVLIFDDV 120 FA TAY L+GSFA AM++GAVG + G++FER+ MSRVYGRD+LMQLLVCYA +LI DD Sbjct: 61 FAFTAYALSGSFAAAMVAGAVGVGLFGVLFERLIMSRVYGRDILMQLLVCYAMILILDDG 120 Query: 121 VRMIWGPEFKSMGMPAAFQVPPLFIAGGVVPPYYLLLIGVALAAAVVLGLGLARSRIGKV 180 V++++G E++ MGMP AF +PP+ +AGG VP YYL ++ VA AA +VL LG+ R+R+GK+ Sbjct: 121 VKLLYGGEYRLMGMPDAFALPPVEVAGGFVPGYYLFMVAVAFAAGLVLWLGINRTRLGKI 180 Query: 181 IRAAAHNPGMVSALGINTGLIYGGVFALGGMLAGLAGALAAPVRSLTPGMGFSVLIESFI 240 +RA A NP MV ALGINT L+Y GVF LG +LAG+AGALAAP+R+LTPGMG S+LIESFI Sbjct: 181 VRALAINPQMVGALGINTTLLYAGVFGLGSLLAGMAGALAAPIRTLTPGMGLSILIESFI 240 Query: 241 VTVIGGMGA 249 VTVIGGMG+ Sbjct: 241 VTVIGGMGS 249 >ref|YP_547839.1| inner-membrane translocator [Polaromonas sp. JS666] gb|ABE42941.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Polaromonas sp. JS666] Length = 305 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/236 (46%), Positives = 153/236 (64%), Gaps = 11/236 (4%) Query: 19 QTTSGLIIGMLLFLVAVGLTLIFGVLKVVNFSHGAFYMFGAYFAMTAYQLAGSFALAMLS 78 Q +GL G+LLFL+A GLTL+FG++ VN +HG+ YM GAYFA TA+Q GSF LA+L+ Sbjct: 9 QLLNGLQYGVLLFLLAAGLTLVFGIMSFVNLAHGSLYMMGAYFAATAFQYTGSFGLAVLA 68 Query: 79 GAVGTAILGLIFERVFMSRVYGRDVLMQLLVCYAFVLIFDDVVRMIWGPEFKSMGMPAAF 138 +G+ +LGL E V ++R+Y RD L +L + VL F+++VR+IWG + P Sbjct: 69 AMLGSLLLGLALEFVAVARLYRRDHLDHVLATFGLVLFFNELVRIIWGAQ------PVFL 122 Query: 139 QVPPLF-----IAGGVVPPYYLLLIGVALAAAVVLGLGLARSRIGKVIRAAAHNPGMVSA 193 QVP I G P Y +I V L A+ L + ++R+G +IRA A NP MV+A Sbjct: 123 QVPEFLGGAIDIGGFSYPAYRFAIIVVGLVVAIGSWLLINKTRVGMLIRAGAVNPAMVAA 182 Query: 194 LGINTGLIYGGVFALGGMLAGLAGALAAPVRSLTPGMGFSVLIESFIVTVIGGMGA 249 LG+N L+ +FA+G MLAGLAGA+A P+ S+ GMG SVLI + +V VIGG+G+ Sbjct: 183 LGVNIRLLNAMLFAVGAMLAGLAGAMAGPILSVQSGMGESVLITTLVVIVIGGIGS 238