BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0029.p (419 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769823.1| ABC transporter substrate-binding protein [Brad... 820 0.0 ref|YP_004417803.1| ABC transporter substrate-binding protein [P... 593 e-167 ref|YP_002498645.1| ABC transporter substrate-binding protein [M... 485 e-135 ref|ZP_02190769.1| ABC transporter substrate-binding protein [al... 474 e-132 ref|YP_293642.1| extracellular ligand-binding receptor [Ralstoni... 177 4e-42 >ref|NP_769823.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48448.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 419 Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/419 (92%), Positives = 404/419 (96%) Query: 1 MKRTRKPGITRRSTLALMGAGAVSFAAPWAARAQAKTIKIGMPTILSGRVAQLGTSSRNA 60 M RTR PGI+RRSTLALMGAGA+S AAPW ARAQAKTIK+GMPTILSGRVAQLGTSSRNA Sbjct: 1 MTRTRTPGISRRSTLALMGAGAMSVAAPWVARAQAKTIKVGMPTILSGRVAQLGTSSRNA 60 Query: 61 VLLEVEKVNAAGGLAGRQIEMVIRDSKGQPQEAARIARELVNTDGCEMLLDGEASSGSFA 120 V+LEV+KVNAAGGLAGR IEMVIRDSKGQPQEAAR+ARELVNTDGCE L+DGEASSGSFA Sbjct: 61 VMLEVDKVNAAGGLAGRPIEMVIRDSKGQPQEAARVARELVNTDGCEWLIDGEASSGSFA 120 Query: 121 VHEVARDLGVLCIHTCSEASSLTADPKQHIPNAFRCVRQGIHDSIVGASYAAGIAKAKGL 180 VHEVARDLGVLC+HTCSEASSLTADPKQHIPNAFRCVRQGIHDSIVG SYAA I+KAKGL Sbjct: 121 VHEVARDLGVLCVHTCSEASSLTADPKQHIPNAFRCVRQGIHDSIVGGSYAAAISKAKGL 180 Query: 181 KKWATCSPDYAYGRDTTGEFVLYLKKFAPDVEIISESWPKLFQPDYTEVVTKILQAKPQA 240 KKWATCSPDYAYGRDTTGEF LYLK+FAPDVE+ISESWPKLFQPDYTEVVTKILQAKPQA Sbjct: 181 KKWATCSPDYAYGRDTTGEFTLYLKRFAPDVEVISESWPKLFQPDYTEVVTKILQAKPQA 240 Query: 241 LYSCLWGGDLTSYIDQANIYAMFTQMEVFAVNMADYTALTVVKNLPKGIHSGDRYIKTFP 300 LYSCLWGGDLTSYIDQANIYAMF+QMEVFAVNMADYTALTVVKNLPKGIHSG+RYIKTFP Sbjct: 241 LYSCLWGGDLTSYIDQANIYAMFSQMEVFAVNMADYTALTVVKNLPKGIHSGNRYIKTFP 300 Query: 301 PTPENAAWGDAYKAKYNEYPTNWSWQNATAVMFLNEAVKKANSTDGKKVAEALTGLTIKC 360 TPENAAWGDAYK+KYNEYPTNWSWQNATAVMFL EA KKAN+TDGKK+AE L GLTIKC Sbjct: 301 TTPENAAWGDAYKSKYNEYPTNWSWQNATAVMFLAEAAKKANATDGKKIAEVLAGLTIKC 360 Query: 361 PFGADGTVTMRADDHTLVGYAIGWGTTIPQEPYVPDVKAGDWKTIFELEAEWKKSKGYT 419 PFGADGTVTMR DDHTLVGYAIGWGTTIPQEPYVP+VKAGDWKTIFELEAEWKKSKGYT Sbjct: 361 PFGADGTVTMRGDDHTLVGYAIGWGTTIPQEPYVPEVKAGDWKTIFELEAEWKKSKGYT 419 >ref|YP_004417803.1| ABC transporter substrate-binding protein [Pusillimonas sp. T7-7] gb|AEC21179.1| ABC transporter substrate-binding protein [Pusillimonas sp. T7-7] Length = 425 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 276/421 (65%), Positives = 328/421 (77%), Gaps = 5/421 (1%) Query: 2 KRTRKPGITRRSTLALMGAGAV----SFAAPWAARAQAKTIKIGMPTILSGRVAQLGTSS 57 K+ P + R L + GA A+ S P + AQ K I++GMPTILSGRVA LG SS Sbjct: 5 KQNILPSLPNRRKL-IQGAAAITGLTSIGLPAISLAQNKPIRVGMPTILSGRVATLGISS 63 Query: 58 RNAVLLEVEKVNAAGGLAGRQIEMVIRDSKGQPQEAARIARELVNTDGCEMLLDGEASSG 117 NA+ LE+EK N AGGL GR IE++IRDSKGQPQEAARIARELVN++GCE+L+DGEASSG Sbjct: 64 SNAIKLELEKFNKAGGLGGRPIELIIRDSKGQPQEAARIARELVNSEGCELLIDGEASSG 123 Query: 118 SFAVHEVARDLGVLCIHTCSEASSLTADPKQHIPNAFRCVRQGIHDSIVGASYAAGIAKA 177 +FAVHEVARDLGVLCIHT SE SSLTADPKQ IPNAFRC RQG+HDSIVG +YA +AKA Sbjct: 124 AFAVHEVARDLGVLCIHTNSETSSLTADPKQRIPNAFRCARQGVHDSIVGGAYAGRVAKA 183 Query: 178 KGLKKWATCSPDYAYGRDTTGEFVLYLKKFAPDVEIISESWPKLFQPDYTEVVTKILQAK 237 KGL KW + SPDYAYGRDTT EF Y K F D+E++ E WPKLFQPDY+E++T+++Q + Sbjct: 184 KGLTKWMSASPDYAYGRDTTAEFFYYAKHFNKDIEVVGEVWPKLFQPDYSEIITRLVQGR 243 Query: 238 PQALYSCLWGGDLTSYIDQANIYAMFTQMEVFAVNMADYTALTVVKNLPKGIHSGDRYIK 297 PQA+YSC WGGDL+S+IDQA+IYA+ + FAVNMADYT LT VKNLP+GIHSG+RY++ Sbjct: 244 PQAIYSCFWGGDLSSFIDQASIYALLKGRDFFAVNMADYTVLTAVKNLPEGIHSGNRYLR 303 Query: 298 TFPPTPENAAWGDAYKAKYNEYPTNWSWQNATAVMFLNEAVKKANSTDGKKVAEALTGLT 357 +FP +P N AW DAY+A Y + PTNWSWQ A FL EA+KKANSTDGKK+A+ L GLT Sbjct: 304 SFPNSPANQAWADAYRAAYKDLPTNWSWQTAAGFNFLAEAMKKANSTDGKKIADVLRGLT 363 Query: 358 IKCPFGADGTVTMRADDHTLVGYAIGWGTTIPQEPYVPDVKAGDWKTIFELEAEWKKSKG 417 I PFG +G +TMRA+D TLV YA+GWG EPY+ D GDW I ELE EWKKSKG Sbjct: 364 IDSPFGTNGKLTMRAEDQTLVDYAVGWGVVDTDEPYMQDPSVGDWTQIVELENEWKKSKG 423 Query: 418 Y 418 Y Sbjct: 424 Y 424 >ref|YP_002498645.1| ABC transporter substrate-binding protein [Methylobacterium nodulans ORS 2060] gb|ACL58342.1| ABC transporter substrate-binding protein [Methylobacterium nodulans ORS 2060] Length = 422 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 222/412 (53%), Positives = 287/412 (69%), Gaps = 1/412 (0%) Query: 8 GITRRSTLALMGAGAVSFAAPWAARAQAKTIKIGMPTILSGRVAQLGTSSRNAVLLEVEK 67 GI RR L + AGA P A AQAK I++GMPTILSGRVA LGTSSR AV L + Sbjct: 10 GIARRQVLGGLAAGAAITGFPHIAGAQAKAIRVGMPTILSGRVAILGTSSRAAVQLAFRQ 69 Query: 68 VNAAGGLAGRQIEMVIRDSKGQPQEAARIARELVNTDGCEMLLDGEASSGSFAVHEVARD 127 +N AGG+ GR +E++ RDSKG+P EAA++ R+L+N DGCE+++DGEASSG+FAVHEV RD Sbjct: 70 INDAGGINGRTLELIERDSKGRPDEAAKVTRDLINNDGCEIIIDGEASSGAFAVHEVIRD 129 Query: 128 LGVLCIHTCSEASSLTADPKQHIPNAFRCVRQGIHDSIVGASYAAGIAKAKGLKKWATCS 187 L VLC+HTCSE SSLTADPK H+ AFR RQGIHD++ G +YAA IAK KGLK+W TCS Sbjct: 130 LPVLCLHTCSETSSLTADPKLHVKTAFRSARQGIHDAVAGGTYAARIAKEKGLKRWMTCS 189 Query: 188 PDYAYGRDTTGEFVLYLKKFAPDVEIISESWPKLFQPDYTEVVTKILQAKPQALYSCLWG 247 PDYAYGRD T EF+ + K F P +E + + WPKLF PDYTE +TKILQ KPQA+YS LWG Sbjct: 190 PDYAYGRDNTAEFLEFAKHFEPSIEAVDQVWPKLFAPDYTESITKILQVKPQAIYSALWG 249 Query: 248 GDLTSYIDQANIYAMFTQMEVFAVNMADYTALTVVKNLPKGIHSGDRYIKTFPPTPENAA 307 GDL ++++Q N+Y +F + F+ + D LT +K LP G+++ RY + +P P N A Sbjct: 250 GDLVAFVEQGNLYRLFGNIGFFSGGLGDPPVLTAIKQLPPGLNTAYRYNRNYPMKPANTA 309 Query: 308 WGDAYKAKYNEYPTNWSWQNATAVMFLNEAVKK-ANSTDGKKVAEALTGLTIKCPFGADG 366 + D + PTNW+WQ + A F+ EA+K+ T+G +A L G+ + PF D Sbjct: 310 FADGFAKIAGHDPTNWAWQCSLACSFIAEALKRTGGRTEGTALAAELKGMKLASPFAVDD 369 Query: 367 TVTMRADDHTLVGYAIGWGTTIPQEPYVPDVKAGDWKTIFELEAEWKKSKGY 418 +TMR DHT++GY + WG T+P+ P+V D DW I ELE +WKK KGY Sbjct: 370 AITMRDSDHTIIGYPVAWGRTVPKAPFVEDFSPVDWARIVELETQWKKGKGY 421 >ref|ZP_02190769.1| ABC transporter substrate-binding protein [alpha proteobacterium BAL199] gb|EDP62350.1| ABC transporter substrate-binding protein [alpha proteobacterium BAL199] Length = 410 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 223/404 (55%), Positives = 287/404 (71%), Gaps = 3/404 (0%) Query: 16 ALMGAGAVSFAAPWAARAQAKTIKIGMPTILSGRVAQLGTSSRNAVLLEVEKVNAAGGLA 75 A +G F P +A K IKIGMPTI+SGRVA LG SS +A ++ V +VN AGG+ Sbjct: 8 AALGTAITGF--PAYLKAAGKPIKIGMPTIMSGRVAILGESSVDAAMVTVRRVNKAGGID 65 Query: 76 GRQIEMVIRDSKGQPQEAARIARELVNTDGCEMLLDGEASSGSFAVHEVARDLGVLCIHT 135 GR +E+V+RDS+G+P EAAR+ R+LVN +GCE++LD EASS SFAV+EV RD+ CIHT Sbjct: 66 GRMLELVVRDSRGKPDEAARMTRDLVNNEGCEIILDAEASSASFAVNEVVRDVKKFCIHT 125 Query: 136 CSEASSLTADPKQHIPNAFRCVRQGIHDSIVGASYAAGIAKAKGLKKWATCSPDYAYGRD 195 SE SSLTADPK +P FR RQGIHD++ G YAA ++K KGLKKWAT SPDYAYGRD Sbjct: 126 NSETSSLTADPKNRVPWVFRTARQGIHDAVGGGLYAAKVSKEKGLKKWATVSPDYAYGRD 185 Query: 196 TTGEFVLYLKKFAPDVEIISESWPKLFQPDYTEVVTKILQAKPQALYSCLWGGDLTSYID 255 T EF+ Y+K FAPDVEI+ ++WPK+FQPDYTE VT +L A+PQA+YS LWGGDL ++ D Sbjct: 186 NTKEFMEYVKIFAPDVEIVEQTWPKIFQPDYTENVTALLNAQPQAVYSALWGGDLVAFFD 245 Query: 256 QANIYAMFTQMEVFAVNMADYTALTVVKNLPKGIHSGDRYIKTFPPTPENAAWGDAYKAK 315 QA++Y +F Q + FAVN+ DY +T +K+ P+G+HSG RY K P T EN AW + + A Sbjct: 246 QASLYGLFDQFQAFAVNLGDYPVITAIKSRPEGVHSGSRYHKDIPDTAENEAWYEEFIAN 305 Query: 316 YNEYPTNWSWQNATAVMFLNEAVKK-ANSTDGKKVAEALTGLTIKCPFGADGTVTMRADD 374 PTNWSW+NAT + F+ A+++ +TD +K+A A G TI PFG G +TMR D Sbjct: 306 SKVLPTNWSWENATGMDFIVAALQETGGNTDAEKMAAATAGRTIDSPFGVGGKLTMREAD 365 Query: 375 HTLVGYAIGWGTTIPQEPYVPDVKAGDWKTIFELEAEWKKSKGY 418 HTLV Y +G+G TI +EPY+ DW I++ E EWKK Y Sbjct: 366 HTLVNYMVGYGKTIAKEPYIVGFTQTDWNDIYKHETEWKKRNNY 409 >ref|YP_293642.1| extracellular ligand-binding receptor [Ralstonia eutropha JMP134] gb|AAZ65785.1| Extracellular ligand-binding receptor [Ralstonia eutropha JMP134] Length = 415 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 126/418 (30%), Positives = 204/418 (48%), Gaps = 40/418 (9%) Query: 12 RSTLALMGAG----AVSFAAPWAARAQAKTIKIGMPTILSGRVAQLGTSSRNAVLLEVEK 67 RS LA + G ++S A A AQ K IKIG+ T L+G A S N V L V++ Sbjct: 11 RSRLAALAIGVATASLSLLAAGPAAAQDKPIKIGLTTDLTGIAAAYARSQVNGVQLAVDQ 70 Query: 68 VNAAGGLAGRQIEMVIRDSKGQPQEAARIARELVNTDGCEMLLDGEASSGSFAVHEVARD 127 +NA+GGL GR++E+++RDS+ +P R+L+ + + L+ + S+ V VA+ Sbjct: 71 INASGGLLGRKLEVLVRDSQLKPDLGTSHTRDLITRENVDFLIGPDGSAVGMTVSAVAKQ 130 Query: 128 LGVLCIHTCSEASSLTADPKQHIPNAFRCVRQGIHDSIVGASYAAGIAKAKGLKKWATCS 187 + + T + +T + P F V G+ ++ A A G K+ A Sbjct: 131 YKKVVMMTIPNSPRITTETFH--PYVFTVVPSGVMEA-----RAMAAAIGPGNKRIAFIG 183 Query: 188 PDYAYGRDTTGEFVLYLKKFAPDVEIISESWPKLFQPDYTEVVTKILQAKPQALYSCLWG 247 DY F +L K P EI+SE+WPKL +PDY+ +T ++ +KP ++S LWG Sbjct: 184 GDYEAAHQGLKYFKDWLAKVNPSAEIVSEAWPKLGEPDYSSYITSLMSSKPDVIFSYLWG 243 Query: 248 GDLTSYIDQANIYAMFTQMEVFA-VNMADYTALTVVKNLPKGI----------HSGDRYI 296 DL ++ Q Y +FT+ +V + V + D AL +P G+ +GDR Sbjct: 244 ADLIGFVKQGKPYGVFTKTKVASLVFLDDLKALG--DEMPDGVIAQMRAPFFALTGDRMT 301 Query: 297 KTFPPTPENAAWGDAYKAKYNEYPTNWSWQNATAVMFLNEAVKKANSTDGKKVAEALTGL 356 K + + ++AKYN+YP +W+ + L +A+K ANS + + +A+ + Sbjct: 302 K----------FTEQFRAKYNDYPADWAIMGYEGMQILAQAIKSANSLESDAIVKAVEQV 351 Query: 357 TIKCPFGADGTVTMRADDHT-LVGYAIGWGTTIPQEPY--VPDVKAGDWKTIFELEAE 411 G G ++ RA DH VG IG + P+ + +VK ++I+ EAE Sbjct: 352 KYD---GLRGPISFRALDHQGTVGSYIGTVAKSDKYPFKILTNVKTISAESIWPSEAE 406