BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0113.0028.p (409 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769822.1| acyl-CoA synthetase [Bradyrhizobium japonicum U... 423 e-116 ref|NP_891233.1| acyl-CoA synthetase [Bordetella bronchiseptica ... 290 3e-76 ref|NP_879465.1| acyl-CoA synthetase [Bordetella pertussis Toham... 290 3e-76 ref|YP_003980919.1| AMP-binding protein [Achromobacter xylosoxid... 275 9e-72 ref|ZP_02191976.1| Putative AMP-dependent synthetase and ligase ... 270 3e-70 >ref|NP_769822.1| acyl-CoA synthetase [Bradyrhizobium japonicum USDA 110] dbj|BAC48447.1| bll3182 [Bradyrhizobium japonicum USDA 110] Length = 497 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/265 (78%), Positives = 229/265 (86%), Gaps = 1/265 (0%) Query: 1 MINLSSFIAFHARRTPDRCALKYRGEDVSYADFDLRIRQVGGWLAARGIAPGDVVAVLMK 60 MINLSSFIAFHARRTP+R ALKYRGE++SYA FD RIR+ GWLAA+GI GDVVAVLMK Sbjct: 1 MINLSSFIAFHARRTPERPALKYRGEEISYAVFDARIRKAAGWLAAQGIGAGDVVAVLMK 60 Query: 61 NSTAFLELVFATSHIGAVFLPINYRLSADEVAYIVGNSGARLLVADEEFAAIATGGAPVV 120 NS AFLELVFATSH+GAVFLPIN+RLS DEV YI GN+GARLL+ DEE AA A G A +V Sbjct: 61 NSAAFLELVFATSHLGAVFLPINFRLSRDEVGYIAGNAGARLLMVDEELAANAAG-AKIV 119 Query: 121 LLDEVAQSSVTNLAPDIAPAPIHVRGPRDLMRLMYTSGTTDRPKGVMLSYENIYWKSADQ 180 +LDE AQ SVT LA A AP+HVR P DLMRLMYTSGTTDRPKGVMLSY+N YWKSADQ Sbjct: 120 VLDEAAQQSVTRLAGGAAAAPMHVRAPSDLMRLMYTSGTTDRPKGVMLSYDNFYWKSADQ 179 Query: 181 TLVLGLNADTRLLVVGPLYHVGALDLPGIAVLWHGGMLCIHRTFEPEPALAAIEREKLNA 240 T+ LGL+A+TRLLVVGPLYHVGALDLPGIAVLWHGG + I R FEPE ALAAI ++LNA Sbjct: 180 TIALGLSAETRLLVVGPLYHVGALDLPGIAVLWHGGFIRIERNFEPETALAAIAEDRLNA 239 Query: 241 AWFAPVMTTALLTCPNRERYDVSSL 265 AWFAPVMTTA+LTCP R+RYDVSSL Sbjct: 240 AWFAPVMTTAMLTCPTRDRYDVSSL 264 >ref|NP_891233.1| acyl-CoA synthetase [Bordetella bronchiseptica RB50] emb|CAE35063.1| putative substrate-CoA ligase [Bordetella bronchiseptica RB50] Length = 497 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 151/266 (56%), Positives = 190/266 (71%), Gaps = 1/266 (0%) Query: 1 MINLSSFIAFHARRTPDRCALKYRGEDVSYADFDLRIRQVGGWLAARGIAPGDVVAVLMK 60 M NLS+ IAFHARRTPD+ A+ YR +++ YA+F RI Q L ARGI+ DVVA+ MK Sbjct: 1 MFNLSASIAFHARRTPDKAAIVYRDQEIGYAEFHQRILQAAAMLHARGISQNDVVALFMK 60 Query: 61 NSTAFLELVFATSHIGAVFLPINYRLSADEVAYIVGNSGARLLVADEEFAAIATGGAPVV 120 NS AFLEL FA S++GAVFLP+NYRL+A E AYI+G++GA+LL+ DEEF AI P + Sbjct: 61 NSAAFLELAFAASYLGAVFLPVNYRLAAPEAAYILGDAGAKLLLVDEEFDAIVALETPKI 120 Query: 121 LLDEVAQSSVTNLA-PDIAPAPIHVRGPRDLMRLMYTSGTTDRPKGVMLSYENIYWKSAD 179 ++D AQ+ L P + P DL+RLMYTSGTT RPKGVM SY N++WKS D Sbjct: 121 VIDAHAQADSRRLGQPGLEIPPQAAVAETDLVRLMYTSGTTSRPKGVMHSYGNLHWKSID 180 Query: 180 QTLVLGLNADTRLLVVGPLYHVGALDLPGIAVLWHGGMLCIHRTFEPEPALAAIEREKLN 239 + LGL A +LLVVGPLYHVGA DLPGIAVLW GG LC+HR F+PE LA+IER +L Sbjct: 181 HVIALGLTASEKLLVVGPLYHVGAFDLPGIAVLWVGGTLCVHREFDPEAVLASIERHRLT 240 Query: 240 AAWFAPVMTTALLTCPNRERYDVSSL 265 W APVM + +LT P+ +R+D+ + Sbjct: 241 CGWMAPVMLSRVLTVPDPDRFDLDTF 266 >ref|NP_879465.1| acyl-CoA synthetase [Bordetella pertussis Tohama I] emb|CAE44950.1| putative substrate-CoA ligase [Bordetella pertussis Tohama I] gb|AEE66085.1| acyl-CoA synthetase [Bordetella pertussis CS] Length = 497 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 151/266 (56%), Positives = 189/266 (71%), Gaps = 1/266 (0%) Query: 1 MINLSSFIAFHARRTPDRCALKYRGEDVSYADFDLRIRQVGGWLAARGIAPGDVVAVLMK 60 M NLS+ IAFHARRTPD+ A+ YR +++ YA+F RI Q L ARGI DVVA+ MK Sbjct: 1 MFNLSASIAFHARRTPDKAAIVYRDQEIGYAEFHQRILQAAAMLHARGIGQNDVVALFMK 60 Query: 61 NSTAFLELVFATSHIGAVFLPINYRLSADEVAYIVGNSGARLLVADEEFAAIATGGAPVV 120 NS AFLEL FA S++GAVFLP+NYRL+A E AYI+G++GA+LL+ DEEF AI P + Sbjct: 61 NSAAFLELAFAASYLGAVFLPVNYRLAAPEAAYILGDAGAKLLLVDEEFDAIVALETPKI 120 Query: 121 LLDEVAQSSVTNLA-PDIAPAPIHVRGPRDLMRLMYTSGTTDRPKGVMLSYENIYWKSAD 179 ++D AQ+ L P + P DL+RLMYTSGTT RPKGVM SY N++WKS D Sbjct: 121 VIDAQAQADSRRLGQPGLEIPPQAAVAETDLVRLMYTSGTTSRPKGVMHSYGNLHWKSID 180 Query: 180 QTLVLGLNADTRLLVVGPLYHVGALDLPGIAVLWHGGMLCIHRTFEPEPALAAIEREKLN 239 + LGL A +LLVVGPLYHVGA DLPGIAVLW GG LC+HR F+PE LA+IER +L Sbjct: 181 HVIALGLTASEKLLVVGPLYHVGAFDLPGIAVLWVGGTLCVHREFDPEAVLASIERHRLT 240 Query: 240 AAWFAPVMTTALLTCPNRERYDVSSL 265 W APVM + +LT P+ +R+D+ + Sbjct: 241 CGWMAPVMLSRVLTVPDPDRFDLDTF 266 >ref|YP_003980919.1| AMP-binding protein [Achromobacter xylosoxidans A8] gb|ADP18204.1| AMP-binding enzyme family protein 22 [Achromobacter xylosoxidans A8] Length = 497 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 153/268 (57%), Positives = 182/268 (67%), Gaps = 4/268 (1%) Query: 1 MINLSSFIAFHARRTPDRCALKYRGEDVSYADFDLRIRQVGGWLAARGIAPGDVVAVLMK 60 M NLS+ IAFHARR PDR A+ YR VSYADF RIR L + G+ GDVVA+ MK Sbjct: 1 MFNLSAAIAFHARRAPDRAAIIYRDVAVSYADFHERIRLAAALLQSHGVGRGDVVALFMK 60 Query: 61 NSTAFLELVFATSHIGAVFLPINYRLSADEVAYIVGNSGARLLVADEEFAAIATGGAPVV 120 NS AFLEL FA S++GA+FLP+NYRL+A E YI+G++ A+LL DEEFA +A P V Sbjct: 61 NSAAFLELAFAASYLGAIFLPVNYRLAAPEAGYILGDARAKLLFVDEEFAEVAALEVPKV 120 Query: 121 LLDEVAQSSVTNLA-PDIAPAPIHVRGPRDLMRLMYTSGTTDRPKGVMLSYENIYWKSAD 179 +LD AQ+ L P +A DL+RLMYTSGTT RPKGVM +Y NI+WKS D Sbjct: 121 VLDAAAQADSRRLGKPGLAVPEPAATTQDDLLRLMYTSGTTSRPKGVMHTYGNIHWKSID 180 Query: 180 QTLVLGLNADTRLLVVGPLYHVGALDLPGIAVLWHGGMLCIHRTFEPEPALAAIEREKLN 239 + LGL RLLVVGPLYHVGA DLPGIAVLW GG LC+HR F+PE LA+IER +L Sbjct: 181 HVIALGLTHQERLLVVGPLYHVGAFDLPGIAVLWVGGTLCVHREFDPEAVLASIERHRLT 240 Query: 240 AAWFAPVMTTALLTCPNRERYDVSSLDT 267 W APVM + +L N RY +LDT Sbjct: 241 CGWMAPVMLSRVLAVQNPGRY---ALDT 265 >ref|ZP_02191976.1| Putative AMP-dependent synthetase and ligase [alpha proteobacterium BAL199] gb|EDP61266.1| Putative AMP-dependent synthetase and ligase [alpha proteobacterium BAL199] Length = 510 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 138/267 (51%), Positives = 173/267 (64%), Gaps = 2/267 (0%) Query: 1 MINLSSFIAFHARRTPDRCALKYRGEDVSYADFDLRIRQVGGWLAARGIAPGDVVAVLMK 60 M NL++F+ +HA R P+ A+ Y ++Y D R+ ++ GW+ G+ G +VA++MK Sbjct: 1 MQNLTTFLRYHADRRPEASAILYGEARITYRDLLDRVLRLAGWMHGEGVGEGTIVALVMK 60 Query: 61 NSTAFLELVFATSHIGAVFLPINYRLSADEVAYIVGNSGARLLVADEEF-AAIATGGAPV 119 NS AFLEL FA SH+GAV LP+NYRL+A+EV YIV +SGA L+ DEE AA+ T Sbjct: 61 NSPAFLELAFAVSHLGAVLLPVNYRLAAEEVGYIVDHSGADLVFVDEELIAAVGTVAVRA 120 Query: 120 VLLDEVAQSSVTNLAP-DIAPAPIHVRGPRDLMRLMYTSGTTDRPKGVMLSYENIYWKSA 178 + + Q+ + LA D P P R P DL RLMYTSGTTDRPKGV Y NIYWK Sbjct: 121 IPVTTAMQADMRTLAGRDTLPVPAARRQPEDLFRLMYTSGTTDRPKGVTHDYANIYWKCM 180 Query: 179 DQTLVLGLNADTRLLVVGPLYHVGALDLPGIAVLWHGGMLCIHRTFEPEPALAAIEREKL 238 D + L + D L VVGPLYHVGA DLPG+ VLW GG L I R F PE L IER ++ Sbjct: 181 DHVVDLAVTRDDCLCVVGPLYHVGAFDLPGLTVLWMGGTLTIIRDFSPEAVLRTIERHRV 240 Query: 239 NAAWFAPVMTTALLTCPNRERYDVSSL 265 W APVMT +L CP+RER+DVSSL Sbjct: 241 TGIWMAPVMTNGVLACPDRERWDVSSL 267