BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0018.p         (70 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771809.1| site-specific integrase/recombinase [Bradyrhizo...    38   0.49 

>ref|NP_771809.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC50434.1| blr5169 [Bradyrhizobium japonicum USDA 110]
          Length = 478

 Score = 38.1 bits (87), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 17/18 (94%), Positives = 17/18 (94%)

Query: 9   LDVPLKRVKKRRVIQQPL 26
            DVPLKRVKKRRVIQQPL
Sbjct: 307 FDVPLKRVKKRRVIQQPL 324