BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0016.p         (71 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772745.1| two-component response regulator [Bradyrhizobiu...   100   1e-19
ref|NP_771826.1| two-component response regulator [Bradyrhizobiu...    99   2e-19
ref|YP_568864.1| response regulator receiver [Rhodopseudomonas p...    95   3e-18
dbj|BAC47444.1| bsl2179 [Bradyrhizobium japonicum USDA 110]            90   1e-16
ref|NP_768819.2| response regulator [Bradyrhizobium japonicum US...    90   1e-16

>ref|NP_772745.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC51370.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 131

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 53/62 (85%)

Query: 1   MDGWQLARRVREMHPDFPIVYMTGASAEQWTANGVPNSILLTKPFAPAQLVTAVSQLLNV 60
           M GW++AR +R++ P FP+VYMTGA+AE W + GVPNS+LL KPFAPAQLVTAVSQLLN 
Sbjct: 68  MKGWEIARLIRQIDPAFPVVYMTGAAAEDWASEGVPNSVLLEKPFAPAQLVTAVSQLLNA 127

Query: 61  GT 62
           G+
Sbjct: 128 GS 129


>ref|NP_771826.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC50451.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 131

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 52/59 (88%)

Query: 1   MDGWQLARRVREMHPDFPIVYMTGASAEQWTANGVPNSILLTKPFAPAQLVTAVSQLLN 59
           M GW++AR VR+++P FP+VYMTGA+AE W + GVPNSILL KPFAPAQLVTAVSQLLN
Sbjct: 68  MKGWEIARLVRQINPAFPVVYMTGAAAEDWASEGVPNSILLKKPFAPAQLVTAVSQLLN 126


>ref|YP_568864.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gb|ABE38963.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 132

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 3/67 (4%)

Query: 1   MDGWQLARRVREMHPDFPIVYMTGASAEQWTANGVPNSILLTKPFAPAQLVTAVSQLLNV 60
           M GW++ RRVRE+ P FP+VYMTG SA +W A GVPNSILLTKPFAP+Q+V AV+QLLN 
Sbjct: 64  MPGWEVGRRVREIDPAFPVVYMTGDSAAEWAARGVPNSILLTKPFAPSQVVAAVTQLLNT 123

Query: 61  ---GTSP 64
              G SP
Sbjct: 124 PNAGASP 130


>dbj|BAC47444.1| bsl2179 [Bradyrhizobium japonicum USDA 110]
          Length = 77

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 1  MDGWQLARRVREMHPDFPIVYMTGASAEQWTANGVPNSILLTKPFAPAQLVTAVSQLLNV 60
          +DGW++ R  RE+ P  PI+YMTG   E+W + GVPNS+LL KPFAPAQ+VTA+SQLLN 
Sbjct: 10 LDGWKVGRSAREIDPTMPIIYMTGTHGEEWASEGVPNSLLLAKPFAPAQIVTAISQLLNA 69

Query: 61 GTSPLCPKD 69
             P+ P D
Sbjct: 70 A-PPIPPAD 77


>ref|NP_768819.2| response regulator [Bradyrhizobium japonicum USDA 110]
          Length = 97

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 1  MDGWQLARRVREMHPDFPIVYMTGASAEQWTANGVPNSILLTKPFAPAQLVTAVSQLLNV 60
          +DGW++ R  RE+ P  PI+YMTG   E+W + GVPNS+LL KPFAPAQ+VTA+SQLLN 
Sbjct: 30 LDGWKVGRSAREIDPTMPIIYMTGTHGEEWASEGVPNSLLLAKPFAPAQIVTAISQLLN- 88

Query: 61 GTSPLCPKD 69
             P+ P D
Sbjct: 89 AAPPIPPAD 97