BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0013.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003449472.1| protein [Azospirillum sp. B510] >gi|28891143...    84   7e-15
ref|ZP_03699088.1| DoxX family protein [Lutiella nitroferrum 200...    82   3e-14
ref|YP_004845347.1| DoxX family protein [Pseudogulbenkiania sp. ...    81   4e-14
ref|YP_001241959.1| hypothetical protein BBta_6128 [Bradyrhizobi...    81   5e-14
ref|ZP_01048226.1| hypothetical protein NB311A_16369 [Nitrobacte...    77   9e-13

>ref|YP_003449472.1| protein [Azospirillum sp. B510]
 dbj|BAI72928.1| protein [Azospirillum sp. B510]
          Length = 143

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 83/145 (57%), Gaps = 14/145 (9%)

Query: 1   MIDQRTAPYAAFILRITIAGLFLAALYGKFILKPISLWWNGLL----KAGYPEWVLTYTL 56
           MID RTA YA F+LR+ +  LFLA      +LK ++    G +      GYP +     +
Sbjct: 1   MIDLRTALYAVFLLRVALGMLFLAH---GLVLKVLTFTIPGTVGYFESIGYPGFFAYLVI 57

Query: 57  SAEFAASILLLLGVYTRWVSLYTLPMMLGATHFWMVRKNFWFVE---GGWEMPFVWAVML 113
             E    +LL+ GV+TRWV+L  LP+++GAT       N W      GGWE P  W ++L
Sbjct: 58  LGEIGGGLLLIAGVHTRWVALALLPILIGAT--LQHVGNGWVFNAPGGGWEFPAFWTLLL 115

Query: 114 LAQALLGDGAFALKVPAL--PWERR 136
           + Q+LLGDGAFALK+PAL  P  RR
Sbjct: 116 VVQSLLGDGAFALKIPALTAPAGRR 140


>ref|ZP_03699088.1| DoxX family protein [Lutiella nitroferrum 2002]
 gb|EEG07802.1| DoxX family protein [Lutiella nitroferrum 2002]
          Length = 135

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 1   MIDQRTAPYAAFILRITIAGLFLA-ALYGKFILKPISLWWNGLLKAGYPEWVLTYTLSAE 59
           MID RTAPYAAF+LR+++  +FLA  L   F+  P           G P +V   T+ AE
Sbjct: 1   MIDTRTAPYAAFLLRLSLGLMFLAHGLTKLFVFTPAGTAQF-FASLGLPGFVGPLTMVAE 59

Query: 60  FAASILLLLGVYTRWVSLYTLPMMLGATHFWMVRKNFWFVE--GGWEMPFVWAVMLLAQA 117
               +LL+LGV  R V+L   P++LGAT    +   + F    GGWE     + + L+ A
Sbjct: 60  IGGGVLLILGVGGRQVALLLSPVLLGATLLVHLANGWAFTNPGGGWEYTAFLSAVALSVA 119

Query: 118 LLGDGAFALKVPALPWERR 136
           LLGDGAFALK    P  RR
Sbjct: 120 LLGDGAFALK----PLGRR 134


>ref|YP_004845347.1| DoxX family protein [Pseudogulbenkiania sp. NH8B]
 dbj|BAK74933.1| DoxX family protein [Pseudogulbenkiania sp. NH8B]
          Length = 135

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 75/139 (53%), Gaps = 8/139 (5%)

Query: 1   MIDQRTAPYAAFILRITIAGLFLA-ALYGKFILKPISLWWNGLLKAGYPEWVLTYTLSAE 59
           MID RTAPYAAF+LR+++  +FLA  L   F+  P           G P +V   T+ AE
Sbjct: 1   MIDTRTAPYAAFLLRLSLGLMFLAHGLTKLFVFTPAGTAQF-FASLGLPGFVGPLTMVAE 59

Query: 60  FAASILLLLGVYTRWVSLYTLPMMLGATHFWMVRKNFWFVE--GGWEMPFVWAVMLLAQA 117
               +LL+LGV  R V+L   P++LGAT    +   + F    GGWE     +   L+ A
Sbjct: 60  IGGGVLLILGVAGRQVALLLSPVLLGATLLVHLANGWAFTNPGGGWEYTAFLSAAALSVA 119

Query: 118 LLGDGAFALKVPALPWERR 136
           LLGDGAFALK    P  RR
Sbjct: 120 LLGDGAFALK----PLGRR 134


>ref|YP_001241959.1| hypothetical protein BBta_6128 [Bradyrhizobium sp. BTAi1]
 gb|ABQ38053.1| putative membrane protein of unknown function with DoxD-like family
           protein domain [Bradyrhizobium sp. BTAi1]
          Length = 144

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 8/131 (6%)

Query: 1   MIDQRTAPYAAFILRITIAGLFLAALYGK-FILKP--ISLWWNGLLKAGYPEWVLTYTLS 57
           MID RTAPYAA +LR+T+ GLFLA    K F+  P   + ++  +   G P  +    ++
Sbjct: 1   MIDSRTAPYAALLLRLTLGGLFLAHASLKLFVFSPAGTAKFFGSI---GLPPELAYAVIT 57

Query: 58  AEFAASILLLLGVYTRWVSLYTLPMMLGATHFWMVRKNFWFV--EGGWEMPFVWAVMLLA 115
           AE  A I L+LGVYTRWV+L  +P++LGA         F+F   +GGWE P  WAV L+ 
Sbjct: 58  AEILAGIALILGVYTRWVALAAVPILLGAIFTVHGSAGFFFNNPKGGWEYPAFWAVTLVI 117

Query: 116 QALLGDGAFAL 126
           QALLGDGAFAL
Sbjct: 118 QALLGDGAFAL 128


>ref|ZP_01048226.1| hypothetical protein NB311A_16369 [Nitrobacter sp. Nb-311A]
 gb|EAQ33815.1| hypothetical protein NB311A_16369 [Nitrobacter sp. Nb-311A]
          Length = 130

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 2/124 (1%)

Query: 6   TAPYAAFILRITIAGLFLAALYGKFILKPISLWWNGLLKAGYPEWVLTYTLSAEFAASIL 65
            A  AA ILR+++  LFLA  + K ++   +         G+P  +    ++AE    I 
Sbjct: 3   NADLAATILRVSMGVLFLAHAWLKLVIFTPAGTAGFFESLGFPGVLAYVVIAAELGGGIA 62

Query: 66  LLLGVYTRWVSLYTLPMMLGATHFWMVRKNFWFVE--GGWEMPFVWAVMLLAQALLGDGA 123
           L+LGV++RWV+L  +P++LG  +       F+F    GGWE P  WA+ L+ QALLGDGA
Sbjct: 63  LILGVWSRWVALALVPILLGTIYAPHGAAGFFFSNQGGGWEFPAFWAIALIVQALLGDGA 122

Query: 124 FALK 127
           FALK
Sbjct: 123 FALK 126