BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0002.p         (162 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241814.1| putative cytochrome c protein [Bradyrhizobiu...   274   4e-72
ref|YP_001207378.1| putative cytochrome c protein [Bradyrhizobiu...   271   3e-71
ref|NP_772854.1| cytochrome c protein [Bradyrhizobium japonicum ...   268   2e-70
ref|YP_779788.1| hypothetical protein RPE_0852 [Rhodopseudomonas...   222   1e-56
ref|YP_002361897.1| putative cytochrome c protein [Methylocella ...   218   3e-55

>ref|YP_001241814.1| putative cytochrome c protein [Bradyrhizobium sp. BTAi1]
 gb|ABQ37908.1| Putative cytochrome c protein [Bradyrhizobium sp. BTAi1]
          Length = 159

 Score =  274 bits (700), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 128/151 (84%), Positives = 139/151 (92%)

Query: 7   ASAEDAGDPTAVKSEDGKYLDKDGNPTFKVTADGTTDWYTYSGYRRYHSECHVCHGPDGM 66
           A AE  GD TAVKSEDGKY DKDGNPT+KVTADG+ DWYTYSGYRRYHSECHVCHGPDGM
Sbjct: 7   AWAEAPGDATAVKSEDGKYFDKDGNPTYKVTADGSVDWYTYSGYRRYHSECHVCHGPDGM 66

Query: 67  GSTYAPALANSLKTMSYADFMGVVASGRKNVSTAQENVMPAFGDNPNVACYMDDLYVYLR 126
           GSTYAPAL +S+K MSY DF+GVVASGRKN+STAQENVMPAFGDNPNVACYMDDLY+YLR
Sbjct: 67  GSTYAPALKDSVKNMSYGDFLGVVASGRKNISTAQENVMPAFGDNPNVACYMDDLYIYLR 126

Query: 127 ARANDAVGRVRPAKHEDKSEAYGKAEDACMG 157
           AR+NDAVGRVRPAKHEDK  AY +AE++CMG
Sbjct: 127 ARSNDAVGRVRPAKHEDKPPAYTEAENSCMG 157


>ref|YP_001207378.1| putative cytochrome c protein [Bradyrhizobium sp. ORS 278]
 emb|CAL79161.1| Putative cytochrome c protein [Bradyrhizobium sp. ORS 278]
          Length = 159

 Score =  271 bits (692), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/151 (84%), Positives = 138/151 (91%)

Query: 7   ASAEDAGDPTAVKSEDGKYLDKDGNPTFKVTADGTTDWYTYSGYRRYHSECHVCHGPDGM 66
           A AE  GD +AVKSEDGKY DK+GNPT+KV ADGT DWYTYSGYRRYHSECHVCHGPDGM
Sbjct: 7   AWAEGPGDASAVKSEDGKYFDKEGNPTYKVAADGTVDWYTYSGYRRYHSECHVCHGPDGM 66

Query: 67  GSTYAPALANSLKTMSYADFMGVVASGRKNVSTAQENVMPAFGDNPNVACYMDDLYVYLR 126
           GSTYAPAL +S+K MSY DF+GVVASGRKNVSTAQENVMPAFGDNPNVACYMDDLY+YLR
Sbjct: 67  GSTYAPALKDSVKNMSYGDFLGVVASGRKNVSTAQENVMPAFGDNPNVACYMDDLYIYLR 126

Query: 127 ARANDAVGRVRPAKHEDKSEAYGKAEDACMG 157
           AR+NDAVGRVRPAKHEDK  AY +AE++CMG
Sbjct: 127 ARSNDAVGRVRPAKHEDKPPAYTEAENSCMG 157


>ref|NP_772854.1| cytochrome c protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51479.1| blr6214 [Bradyrhizobium japonicum USDA 110]
          Length = 160

 Score =  268 bits (684), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 142/155 (91%), Gaps = 1/155 (0%)

Query: 4   GGVASAEDAGDPTAVKSED-GKYLDKDGNPTFKVTADGTTDWYTYSGYRRYHSECHVCHG 62
           GG+A A+  GDPTAVK ED GK+LDK+GNPT+K++ADGT DW+TYSGYRRYHS+CHVCHG
Sbjct: 4   GGIAVADGPGDPTAVKKEDDGKWLDKEGNPTYKISADGTVDWFTYSGYRRYHSDCHVCHG 63

Query: 63  PDGMGSTYAPALANSLKTMSYADFMGVVASGRKNVSTAQENVMPAFGDNPNVACYMDDLY 122
           PDGMGSTYAPAL +S+KTMSY DF+GVVASGRKN+STAQENVMPAFGDNPNVACYMDDLY
Sbjct: 64  PDGMGSTYAPALKDSVKTMSYGDFLGVVASGRKNISTAQENVMPAFGDNPNVACYMDDLY 123

Query: 123 VYLRARANDAVGRVRPAKHEDKSEAYGKAEDACMG 157
           VYLRAR+N+A GR RP+K E+K+E Y KAEDACMG
Sbjct: 124 VYLRARSNEAWGRQRPSKKEEKNETYTKAEDACMG 158


>ref|YP_779788.1| hypothetical protein RPE_0852 [Rhodopseudomonas palustris BisA53]
 gb|ABJ04808.1| hypothetical protein RPE_0852 [Rhodopseudomonas palustris BisA53]
          Length = 190

 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 122/146 (83%), Gaps = 1/146 (0%)

Query: 14  DPTAV-KSEDGKYLDKDGNPTFKVTADGTTDWYTYSGYRRYHSECHVCHGPDGMGSTYAP 72
           DPT+V KS DGKYLDK+G PTF + ADGT DW+TYSG+R YHSECHVCHGP G GS+YAP
Sbjct: 43  DPTSVSKSIDGKYLDKEGTPTFHIAADGTVDWFTYSGFRHYHSECHVCHGPYGEGSSYAP 102

Query: 73  ALANSLKTMSYADFMGVVASGRKNVSTAQENVMPAFGDNPNVACYMDDLYVYLRARANDA 132
           AL +S+K MSY +F+ VVA+GR+NVS++ ENVMPAFG N NVAC++DDLY+YLRARA DA
Sbjct: 103 ALKDSVKQMSYGEFLNVVATGRQNVSSSSENVMPAFGHNLNVACHLDDLYIYLRARAEDA 162

Query: 133 VGRVRPAKHEDKSEAYGKAEDACMGH 158
           +GRVRPAK EDK E   + E +CMG+
Sbjct: 163 LGRVRPAKREDKPEVAKQEEASCMGN 188


>ref|YP_002361897.1| putative cytochrome c protein [Methylocella silvestris BL2]
 gb|ACK50535.1| putative cytochrome c protein [Methylocella silvestris BL2]
          Length = 175

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 125/158 (79%), Gaps = 1/158 (0%)

Query: 1   VAMGGVASAEDAGDPTAVKSED-GKYLDKDGNPTFKVTADGTTDWYTYSGYRRYHSECHV 59
           ++  GVA AE   DP AVK +D GK+ D  G+PT+K+ +DG  DW++YSG+RRYHSECHV
Sbjct: 16  ISSAGVAWAEAPSDPAAVKQDDLGKWFDAKGDPTYKIESDGKLDWFSYSGFRRYHSECHV 75

Query: 60  CHGPDGMGSTYAPALANSLKTMSYADFMGVVASGRKNVSTAQENVMPAFGDNPNVACYMD 119
           CHGPDG GS+YAPAL NSLKT++YA+F+G+V  GR+NV+++QENVMPAFGDN NV CY+D
Sbjct: 76  CHGPDGEGSSYAPALKNSLKTLTYAEFVGIVVGGRRNVTSSQENVMPAFGDNKNVMCYLD 135

Query: 120 DLYVYLRARANDAVGRVRPAKHEDKSEAYGKAEDACMG 157
           D+Y YLR R+ +++ R RPA H +K E   +AE AC+G
Sbjct: 136 DIYAYLRGRSTESIARGRPAGHVEKPEKATEAEKACLG 173