BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0027.p         (289 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08868534.1| Conjugal transfer protein traG [Azospirillum ...   408   e-112
ref|NP_766683.1| conjugal transfer coupling protein TraG [Bradyr...   397   e-109
ref|YP_002277165.1| conjugal transfer coupling protein TraG [Glu...   390   e-106
ref|ZP_07026216.1| TRAG family protein [Afipia sp. 1NLS2] >gi|29...   383   e-104
ref|YP_001925774.1| conjugal transfer coupling protein TraG [Met...   373   e-101

>ref|ZP_08868534.1| Conjugal transfer protein traG [Azospirillum amazonense Y2]
 gb|EGY01876.1| Conjugal transfer protein traG [Azospirillum amazonense Y2]
          Length = 660

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/208 (91%), Positives = 201/208 (96%)

Query: 1   MSATKILWGQVITVFAIVLLTIWTATEWTAWRLGFQPQLGQPWFELLHFPFYLPPAFFWW 60
           MSATKILWGQ+ITVFAIVLL IWTATEWTAWRLGFQP+LG+PWFE+LHFPFYLPPAFFWW
Sbjct: 1   MSATKILWGQIITVFAIVLLAIWTATEWTAWRLGFQPELGRPWFEILHFPFYLPPAFFWW 60

Query: 61  WYAYDAYAPSIFIEGGYIAASGGIIAAAVAIGMSVWRAREAKNAETYGSARWAEAKEIEQ 120
           WYAYDAYAPSIFIEG YIA+SGG IAAAVAIGMSVWRAREAKN ETYGSARWA+ KEIEQ
Sbjct: 61  WYAYDAYAPSIFIEGAYIASSGGFIAAAVAIGMSVWRAREAKNIETYGSARWAQPKEIEQ 120

Query: 121 AGLLGPDGVVLGRLEQTYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG 180
           AGLLGPDGVVLGR +++YLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG
Sbjct: 121 AGLLGPDGVVLGRHQRSYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG 180

Query: 181 ENWQLTAGFRARHGRVLLFDPTNVKSSA 208
           ENWQLTAGFRA+HGR+LLFDPTN KSSA
Sbjct: 181 ENWQLTAGFRAQHGRILLFDPTNPKSSA 208


>ref|NP_766683.1| conjugal transfer coupling protein TraG [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC45308.1| conjugal transfer protein [Bradyrhizobium japonicum USDA 110]
          Length = 675

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/208 (94%), Positives = 201/208 (96%)

Query: 1   MSATKILWGQVITVFAIVLLTIWTATEWTAWRLGFQPQLGQPWFELLHFPFYLPPAFFWW 60
           MSATKILWGQVI VF IVLLTIW ATEWTAWRLGFQPQLGQPWFELLHFPFYLPPAFFWW
Sbjct: 16  MSATKILWGQVIMVFGIVLLTIWAATEWTAWRLGFQPQLGQPWFELLHFPFYLPPAFFWW 75

Query: 61  WYAYDAYAPSIFIEGGYIAASGGIIAAAVAIGMSVWRAREAKNAETYGSARWAEAKEIEQ 120
           WYAYDAYAPSIF EG +IAASGGIIAAAVAIGMSVWRAREAKNAETYGSARWA+AKEIEQ
Sbjct: 76  WYAYDAYAPSIFTEGAFIAASGGIIAAAVAIGMSVWRAREAKNAETYGSARWAKAKEIEQ 135

Query: 121 AGLLGPDGVVLGRLEQTYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG 180
           AGLLGPDGVVLGR E+TYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHD+KG
Sbjct: 136 AGLLGPDGVVLGRFERTYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDLKG 195

Query: 181 ENWQLTAGFRARHGRVLLFDPTNVKSSA 208
           ENWQLTAGFRARHGRVLLFDPTN KSSA
Sbjct: 196 ENWQLTAGFRARHGRVLLFDPTNAKSSA 223


>ref|YP_002277165.1| conjugal transfer coupling protein TraG [Gluconacetobacter
           diazotrophicus PAl 5]
 gb|ACI52550.1| TRAG family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 660

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 196/208 (94%)

Query: 1   MSATKILWGQVITVFAIVLLTIWTATEWTAWRLGFQPQLGQPWFELLHFPFYLPPAFFWW 60
           M ATKILWGQ+ITVFAIVLL  W ATEWTAWRLGFQP+LG+PWFE+LHFPFYLPPAFFWW
Sbjct: 1   MPATKILWGQIITVFAIVLLATWIATEWTAWRLGFQPELGRPWFEVLHFPFYLPPAFFWW 60

Query: 61  WYAYDAYAPSIFIEGGYIAASGGIIAAAVAIGMSVWRAREAKNAETYGSARWAEAKEIEQ 120
           WYAYDAYAPSIFIEG YIA+SGG+IAAAVAIGMSVWRAREA+N  TYGSARWA+ +EI +
Sbjct: 61  WYAYDAYAPSIFIEGAYIASSGGLIAAAVAIGMSVWRAREAENIATYGSARWAQPQEIAE 120

Query: 121 AGLLGPDGVVLGRLEQTYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG 180
           AGLLG DGVVLGR +++YLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG
Sbjct: 121 AGLLGSDGVVLGRHQRSYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG 180

Query: 181 ENWQLTAGFRARHGRVLLFDPTNVKSSA 208
           ENWQLTAGFRA+HGRVLLFDPTN KSSA
Sbjct: 181 ENWQLTAGFRAQHGRVLLFDPTNAKSSA 208


>ref|ZP_07026216.1| TRAG family protein [Afipia sp. 1NLS2]
 gb|EFI53358.1| TRAG family protein [Afipia sp. 1NLS2]
          Length = 660

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/208 (91%), Positives = 197/208 (94%)

Query: 1   MSATKILWGQVITVFAIVLLTIWTATEWTAWRLGFQPQLGQPWFELLHFPFYLPPAFFWW 60
           MSATKILWGQVITVFAIVLL IW+ATEWTAWRLGFQPQLG PWFELLHFPFYLPPA FWW
Sbjct: 1   MSATKILWGQVITVFAIVLLAIWSATEWTAWRLGFQPQLGHPWFELLHFPFYLPPALFWW 60

Query: 61  WYAYDAYAPSIFIEGGYIAASGGIIAAAVAIGMSVWRAREAKNAETYGSARWAEAKEIEQ 120
           WYAYDAYAP IFIEG YIAASGGIIAAAVAIGMSVWRA EAKNAETYGSARWA+ KEIE 
Sbjct: 61  WYAYDAYAPDIFIEGAYIAASGGIIAAAVAIGMSVWRAHEAKNAETYGSARWAQPKEIEA 120

Query: 121 AGLLGPDGVVLGRLEQTYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG 180
           AGL GPDGVVLGR +++YLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG
Sbjct: 121 AGLSGPDGVVLGRYQRSYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG 180

Query: 181 ENWQLTAGFRARHGRVLLFDPTNVKSSA 208
           ENWQLTAGFRA+HGRVLLFDPTN KSSA
Sbjct: 181 ENWQLTAGFRAQHGRVLLFDPTNAKSSA 208


>ref|YP_001925774.1| conjugal transfer coupling protein TraG [Methylobacterium populi
           BJ001]
 gb|ACB81239.1| TRAG family protein [Methylobacterium populi BJ001]
          Length = 661

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/208 (83%), Positives = 186/208 (89%)

Query: 1   MSATKILWGQVITVFAIVLLTIWTATEWTAWRLGFQPQLGQPWFELLHFPFYLPPAFFWW 60
           MSATKILWGQ++TV AIVL T W ATEW AWRL FQP+LG PWF+L  FPFYLPPAFFWW
Sbjct: 1   MSATKILWGQILTVSAIVLATTWGATEWVAWRLAFQPELGAPWFQLFGFPFYLPPAFFWW 60

Query: 61  WYAYDAYAPSIFIEGGYIAASGGIIAAAVAIGMSVWRAREAKNAETYGSARWAEAKEIEQ 120
           WY +DAYAPSIF+EG +IAASGG I+ AVAIGMSVWRAREAK  ETYGSARWAE +E++ 
Sbjct: 61  WYGFDAYAPSIFVEGAWIAASGGFISVAVAIGMSVWRAREAKKVETYGSARWAEKEEVKA 120

Query: 121 AGLLGPDGVVLGRLEQTYLRHDGPEHVLCFAPTRSGKGVGLVIPSLLTWPGSAIVHDIKG 180
           AGLL PDGVVLGR +  YLRHDGPEHVLCFAPTRSGKGVGLV+PSLLTWPGSAIVHDIKG
Sbjct: 121 AGLLNPDGVVLGRYDHDYLRHDGPEHVLCFAPTRSGKGVGLVVPSLLTWPGSAIVHDIKG 180

Query: 181 ENWQLTAGFRARHGRVLLFDPTNVKSSA 208
           ENWQLTAGFRARHGRVLLFDPTN KSSA
Sbjct: 181 ENWQLTAGFRARHGRVLLFDPTNPKSSA 208