BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0016.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002277145.1| replication protein A [Gluconacetobacter dia... 560 e-157 ref|NP_766691.1| replication protein A [Bradyrhizobium japonicum... 546 e-153 ref|ZP_07026224.1| Replication initiator protein A [Afipia sp. 1... 524 e-147 ref|YP_004302030.1| Replication protein A [Polymorphum gilvum SL... 499 e-139 gb|EGP54463.1| replication protein A [Agrobacterium tumefaciens F2] 498 e-139 >ref|YP_002277145.1| replication protein A [Gluconacetobacter diazotrophicus PAl 5] gb|ACI52530.1| replication protein A [Gluconacetobacter diazotrophicus PAl 5] Length = 371 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 276/339 (81%), Positives = 293/339 (86%), Gaps = 2/339 (0%) Query: 1 MERPFFSLAKAKRTRPILYQTGDVCVEVYAVPEHGMATIWDADVLIWAASQIVEAENLGL 60 MERPFFSLAKA+RT PILY+ GDV VEVYAVPEHGMATIWDADVLIWAASQIVEAE+LG Sbjct: 34 MERPFFSLAKARRTAPILYEAGDVRVEVYAVPEHGMATIWDADVLIWAASQIVEAEDLGF 93 Query: 61 KTSRFLRFTPYQLLTAVGRRTGARDYKLLKGALARLQATVIRTTIRQGEHWRRHQFSWIN 120 KTSRFLRFTPYQLLT+ GR+TGARDYKLLKGALARLQ+T+IRTTIR GEHWRRHQFSWIN Sbjct: 94 KTSRFLRFTPYQLLTSTGRQTGARDYKLLKGALARLQSTIIRTTIRNGEHWRRHQFSWIN 153 Query: 121 EWEECAQRDGRVEGMELVLPDWFYRGVIDRSLVLTIDPAYFSLTGGIERWLYRVARKHAG 180 EWEEC RDGRVEGME VLPDWFYRGVIDRSLVL IDPAYF LTGGIERWLYRVARKHAG Sbjct: 154 EWEECTTRDGRVEGMEFVLPDWFYRGVIDRSLVLAIDPAYFKLTGGIERWLYRVARKHAG 213 Query: 181 RQPKGWLFEIAHLHRKSGSLVRVSDFALQIRRIAVRQPLPGYQLHIEREARSELLRIVPS 240 RQPKGWLFEIAHLH KSGSLVRV+DFALQ+RRIA RQPLPGY+L IER R ELLRIVP+ Sbjct: 214 RQPKGWLFEIAHLHEKSGSLVRVTDFALQLRRIAARQPLPGYRLRIERNGRRELLRIVPA 273 Query: 241 KLSTSPVDSAVEALGTSHANSIGIPHAALSGLRPREPQLTLWPETVIPDLNIESNVESNR 300 LST PVD AV+ +GTSHAN IGI HAALSGLR +PQLTLWPET IP LN+ESN ESN Sbjct: 274 HLSTVPVDGAVDGVGTSHANGIGISHAALSGLRTHQPQLTLWPETAIPGLNLESNKESNS 333 Query: 301 CSGPARLADN-AEADAERPTKHLSQPSLPLLDRKTGGRR 338 CS A+ ADN A A +R QPSLP L RK GG R Sbjct: 334 CSWAAQTADNPATAAQQRSKLSCRQPSLP-LSRKPGGER 371 >ref|NP_766691.1| replication protein A [Bradyrhizobium japonicum USDA 110] dbj|BAC45316.1| replication protein A [Bradyrhizobium japonicum USDA 110] Length = 425 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 275/338 (81%), Positives = 294/338 (86%) Query: 1 MERPFFSLAKAKRTRPILYQTGDVCVEVYAVPEHGMATIWDADVLIWAASQIVEAENLGL 60 MERPFFSLAKAKRTRPILYQTGDVCVEVYAVPEHGMATIWDADVLIWAASQIVEAENLGL Sbjct: 88 MERPFFSLAKAKRTRPILYQTGDVCVEVYAVPEHGMATIWDADVLIWAASQIVEAENLGL 147 Query: 61 KTSRFLRFTPYQLLTAVGRRTGARDYKLLKGALARLQATVIRTTIRQGEHWRRHQFSWIN 120 KTSRFLRFTPYQLLTAVGR+TGARDYKLLKGALARLQATVIRT+IRQGEHWRRHQFSWIN Sbjct: 148 KTSRFLRFTPYQLLTAVGRQTGARDYKLLKGALARLQATVIRTSIRQGEHWRRHQFSWIN 207 Query: 121 EWEECAQRDGRVEGMELVLPDWFYRGVIDRSLVLTIDPAYFSLTGGIERWLYRVARKHAG 180 EWEECA RDGRV+GME VLPDW YRGVIDRSLVLTIDPAYFSLTGGIERWLYRVARKHAG Sbjct: 208 EWEECATRDGRVQGMEFVLPDWLYRGVIDRSLVLTIDPAYFSLTGGIERWLYRVARKHAG 267 Query: 181 RQPKGWLFEIAHLHRKSGSLVRVSDFALQIRRIAVRQPLPGYQLHIEREARSELLRIVPS 240 RQP+GWLFE+AHLH KSGSL + +DFA +RRIA RQPLPGY L IER R ELLRI+PS Sbjct: 268 RQPRGWLFEVAHLHEKSGSLAKPADFAFDLRRIAARQPLPGYCLSIERRERRELLRILPS 327 Query: 241 KLSTSPVDSAVEALGTSHANSIGIPHAALSGLRPREPQLTLWPETVIPDLNIESNVESNR 300 K T+PVD AV LGTS ++IG P +SG R +PQLTLWP I N+ESN+ESN Sbjct: 328 KSFTAPVDGAVNQLGTSGVHTIGTPGVPVSGFRECKPQLTLWPGNTIACPNLESNLESNC 387 Query: 301 CSGPARLADNAEADAERPTKHLSQPSLPLLDRKTGGRR 338 CSG ARLADN + A+ PT+H SQPSLPL RKTGG R Sbjct: 388 CSGAARLADNTDIRAQPPTEHPSQPSLPLSGRKTGGMR 425 >ref|ZP_07026224.1| Replication initiator protein A [Afipia sp. 1NLS2] gb|EFI53366.1| Replication initiator protein A [Afipia sp. 1NLS2] Length = 371 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 272/339 (80%), Positives = 287/339 (84%), Gaps = 2/339 (0%) Query: 1 MERPFFSLAKAKRTRPILYQTGDVCVEVYAVPEHGMATIWDADVLIWAASQIVEAENLGL 60 MERPFFSLAKA+RT PILY+ V VEVYAVPEHGMATIWDADVLIWAASQIVEAENLG Sbjct: 34 MERPFFSLAKARRTAPILYEAAGVRVEVYAVPEHGMATIWDADVLIWAASQIVEAENLGF 93 Query: 61 KTSRFLRFTPYQLLTAVGRRTGARDYKLLKGALARLQATVIRTTIRQGEHWRRHQFSWIN 120 KTSRFLRFTPYQLLTA+GR+TGARDYKLLKGALARLQ+TVI TTIR GEHWRRHQFSWIN Sbjct: 94 KTSRFLRFTPYQLLTAIGRQTGARDYKLLKGALARLQSTVIHTTIRNGEHWRRHQFSWIN 153 Query: 121 EWEECAQRDGRVEGMELVLPDWFYRGVIDRSLVLTIDPAYFSLTGGIERWLYRVARKHAG 180 EWEEC RDGRVEGME VLPDWFYRGVIDRSLVL IDPAYF LTGGIERWLYRVARKHAG Sbjct: 154 EWEECTTRDGRVEGMEFVLPDWFYRGVIDRSLVLAIDPAYFRLTGGIERWLYRVARKHAG 213 Query: 181 RQPKGWLFEIAHLHRKSGSLVRVSDFALQIRRIAVRQPLPGYQLHIEREARSELLRIVPS 240 RQPKGWLFEIAHLH KSGSLVRVSDFALQIRRIA RQPLPGY+L IE + R E LRI+P+ Sbjct: 214 RQPKGWLFEIAHLHEKSGSLVRVSDFALQIRRIAARQPLPGYRLRIECQGRRETLRILPA 273 Query: 241 KLSTSPVDSAVEALGTSHANSIGIPHAALSGLRPREPQLTLWPETVIPDLNIESNVESNR 300 + ST PVD AVE LGTSHAN IG PHAALSGLR EPQLTLWPET IP LN+ESN ESN Sbjct: 274 RSSTVPVDGAVETLGTSHANGIGTPHAALSGLRTHEPQLTLWPETAIPGLNLESNSESNS 333 Query: 301 CSGPARLADNAEADAERPTKHLS-QPSLPLLDRKTGGRR 338 AR AD A + ++ QPSLP RK GG+R Sbjct: 334 SCWSARSADKPATSATQASEPPGRQPSLP-FGRKPGGKR 371 >ref|YP_004302030.1| Replication protein A [Polymorphum gilvum SL003B-26A1] gb|ADZ68735.1| Replication protein A [Polymorphum gilvum SL003B-26A1] Length = 398 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/317 (78%), Positives = 269/317 (84%), Gaps = 1/317 (0%) Query: 1 MERPFFSLAKAKRTRPILYQTGDVCVEVYAVPEHGMATIWDADVLIWAASQIVEAENLGL 60 MERPFFSLAKAKR PI Y+ GDV VEV AV EHGMATIWDADVLIWAASQIVEAENLGL Sbjct: 34 MERPFFSLAKAKRVVPINYEAGDVRVEVLAVQEHGMATIWDADVLIWAASQIVEAENLGL 93 Query: 61 KTSRFLRFTPYQLLTAVGRRTGARDYKLLKGALARLQATVIRTTIRQGEHWRRHQFSWIN 120 +TSRFLRFTPYQLLTA+GR TGARDYKLLKGAL RLQ+TVIRT IR GE+WRRHQFSWIN Sbjct: 94 RTSRFLRFTPYQLLTAIGRETGARDYKLLKGALTRLQSTVIRTNIRHGENWRRHQFSWIN 153 Query: 121 EWEECAQRDGRVEGMELVLPDWFYRGVIDRSLVLTIDPAYFSLTGGIERWLYRVARKHAG 180 EWEE + DGRVEGME VLPDWFYRGVIDRSLVLTIDPAYF LTGGIERWLYRVARKHAG Sbjct: 154 EWEELTRADGRVEGMEFVLPDWFYRGVIDRSLVLTIDPAYFRLTGGIERWLYRVARKHAG 213 Query: 181 RQPKGWLFEIAHLHRKSGSLVRVSDFALQIRRIAVRQPLPGYQLHIEREARSELLRIVPS 240 RQP GWLF++ HLH KSGSLVRVSDFALQ+RRIA+RQPLPGY+L IERE R ELLRI+P+ Sbjct: 214 RQPGGWLFDVPHLHEKSGSLVRVSDFALQLRRIALRQPLPGYRLRIEREGRRELLRILPA 273 Query: 241 KLSTSPVDSAVEALGTSHANSIGIPHAALSGLRPREPQLTLWPETVIPDLNIESNVESNR 300 ST PVD AVEA+GTSHA+ G +SGLR ++PQL+LWPET IP LN+ESN ESN Sbjct: 274 GPSTPPVDKAVEAIGTSHADLSGFRTQTVSGLRTQKPQLSLWPETTIPGLNLESNRESN- 332 Query: 301 CSGPARLADNAEADAER 317 G AR +N A R Sbjct: 333 LFGRARDVENLIRSAAR 349 >gb|EGP54463.1| replication protein A [Agrobacterium tumefaciens F2] Length = 398 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 247/317 (77%), Positives = 269/317 (84%), Gaps = 1/317 (0%) Query: 1 MERPFFSLAKAKRTRPILYQTGDVCVEVYAVPEHGMATIWDADVLIWAASQIVEAENLGL 60 MERPFFSLAKAKR PILY+ GDV VEV AV EHGMATIWDADVLIWAASQIVEAENLGL Sbjct: 34 MERPFFSLAKAKRVVPILYEAGDVRVEVLAVQEHGMATIWDADVLIWAASQIVEAENLGL 93 Query: 61 KTSRFLRFTPYQLLTAVGRRTGARDYKLLKGALARLQATVIRTTIRQGEHWRRHQFSWIN 120 +TSRFLRFTPYQLLTA+GR TGARDYKLLKGAL+RLQ+TVIRT IRQGE+WRRHQFSWIN Sbjct: 94 RTSRFLRFTPYQLLTAIGRETGARDYKLLKGALSRLQSTVIRTNIRQGENWRRHQFSWIN 153 Query: 121 EWEECAQRDGRVEGMELVLPDWFYRGVIDRSLVLTIDPAYFSLTGGIERWLYRVARKHAG 180 EWEE ++ DGRVEGME VLPDWFYRGV+DRSLVLTIDPAYF L+GGIERWLYRVARKHAG Sbjct: 154 EWEELSRADGRVEGMEFVLPDWFYRGVVDRSLVLTIDPAYFRLSGGIERWLYRVARKHAG 213 Query: 181 RQPKGWLFEIAHLHRKSGSLVRVSDFALQIRRIAVRQPLPGYQLHIEREARSELLRIVPS 240 RQP GWLF++ HLH KSGSLVRVSDFALQ+RRIA+RQPLPGY+L IERE R ELLRIVP Sbjct: 214 RQPGGWLFDVPHLHEKSGSLVRVSDFALQLRRIALRQPLPGYRLRIEREGRRELLRIVPV 273 Query: 241 KLSTSPVDSAVEALGTSHANSIGIPHAALSGLRPREPQLTLWPETVIPDLNIESNVESNR 300 S +PVD AV+A+G SHA G A+SGLR PQL+LWPET IP LN+ESN ESN Sbjct: 274 SPSAAPVDKAVDAIGISHAALSGFRTQAVSGLRTHAPQLSLWPETTIPGLNLESNRESN- 332 Query: 301 CSGPARLADNAEADAER 317 G AR +N A R Sbjct: 333 IVGRARDVENLIRSAAR 349