BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0014.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766691.1| replication protein A [Bradyrhizobium japonicum... 768 0.0 ref|YP_002277145.1| replication protein A [Gluconacetobacter dia... 584 e-164 ref|ZP_07026224.1| Replication initiator protein A [Afipia sp. 1... 558 e-157 ref|YP_004302030.1| Replication protein A [Polymorphum gilvum SL... 531 e-149 gb|EGP54463.1| replication protein A [Agrobacterium tumefaciens F2] 530 e-148 >ref|NP_766691.1| replication protein A [Bradyrhizobium japonicum USDA 110] dbj|BAC45316.1| replication protein A [Bradyrhizobium japonicum USDA 110] Length = 425 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/416 (94%), Positives = 398/416 (95%), Gaps = 9/416 (2%) Query: 2 SSRRLITPSERSK---------XRRIRATSKRAPPATRIAKATLVMSSRRLITPSERSKL 52 S+ L TPS SK RRIRATSKRAPPATRIAKATLVMSSRRLITPSERSKL Sbjct: 10 SAAALSTPSAISKPGPIRPPAAQRRIRATSKRAPPATRIAKATLVMSSRRLITPSERSKL 69 Query: 53 DPFVVATGDASPRDQRNLMERPFFSLAKAKRTRPILYEAGDIRVEVYAVSEHGMATIWDA 112 DPFVVATGDASPRDQR+LMERPFFSLAKAKRTRPILY+ GD+ VEVYAV EHGMATIWDA Sbjct: 70 DPFVVATGDASPRDQRDLMERPFFSLAKAKRTRPILYQTGDVCVEVYAVPEHGMATIWDA 129 Query: 113 DVLIWAASQIVEAENLGLKTSRFLRFTPYQLLTAVGRQTGARDYKLLKGALARLQATVIR 172 DVLIWAASQIVEAENLGLKTSRFLRFTPYQLLTAVGRQTGARDYKLLKGALARLQATVIR Sbjct: 130 DVLIWAASQIVEAENLGLKTSRFLRFTPYQLLTAVGRQTGARDYKLLKGALARLQATVIR 189 Query: 173 TSIRQGEHWRRHQFSWINEWEECATRDGRVQGMEFVLPDWLYRGVIDRSLVLTIDPAYFS 232 TSIRQGEHWRRHQFSWINEWEECATRDGRVQGMEFVLPDWLYRGVIDRSLVLTIDPAYFS Sbjct: 190 TSIRQGEHWRRHQFSWINEWEECATRDGRVQGMEFVLPDWLYRGVIDRSLVLTIDPAYFS 249 Query: 233 LTGGIERWLYRVARKHAGRQPRGWLFEVAHLHEKSGSLAKPADFAFDLRRIAARQPLPGY 292 LTGGIERWLYRVARKHAGRQPRGWLFEVAHLHEKSGSLAKPADFAFDLRRIAARQPLPGY Sbjct: 250 LTGGIERWLYRVARKHAGRQPRGWLFEVAHLHEKSGSLAKPADFAFDLRRIAARQPLPGY 309 Query: 293 CLSIERRERRELLRILPSKSFTAPVDGAVNQLGTSGVHTIGTPGVPVSGFRECKPQLTLW 352 CLSIERRERRELLRILPSKSFTAPVDGAVNQLGTSGVHTIGTPGVPVSGFRECKPQLTLW Sbjct: 310 CLSIERRERRELLRILPSKSFTAPVDGAVNQLGTSGVHTIGTPGVPVSGFRECKPQLTLW 369 Query: 353 PGNTIACPNLESNLESNCCSGAARLADNTDIRAQPPTEHPSQPSLPLSGRKTGGMR 408 PGNTIACPNLESNLESNCCSGAARLADNTDIRAQPPTEHPSQPSLPLSGRKTGGMR Sbjct: 370 PGNTIACPNLESNLESNCCSGAARLADNTDIRAQPPTEHPSQPSLPLSGRKTGGMR 425 >ref|YP_002277145.1| replication protein A [Gluconacetobacter diazotrophicus PAl 5] gb|ACI52530.1| replication protein A [Gluconacetobacter diazotrophicus PAl 5] Length = 371 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 292/372 (78%), Positives = 314/372 (84%), Gaps = 2/372 (0%) Query: 38 MSSRRLITPSERSKLDPFVVATGDASPRDQRNLMERPFFSLAKAKRTRPILYEAGDIRVE 97 MSSRRLIT SERSKLDPFVVATGDASPRDQR+LMERPFFSLAKA+RT PILYEAGD+RVE Sbjct: 1 MSSRRLITASERSKLDPFVVATGDASPRDQRDLMERPFFSLAKARRTAPILYEAGDVRVE 60 Query: 98 VYAVSEHGMATIWDADVLIWAASQIVEAENLGLKTSRFLRFTPYQLLTAVGRQTGARDYK 157 VYAV EHGMATIWDADVLIWAASQIVEAE+LG KTSRFLRFTPYQLLT+ GRQTGARDYK Sbjct: 61 VYAVPEHGMATIWDADVLIWAASQIVEAEDLGFKTSRFLRFTPYQLLTSTGRQTGARDYK 120 Query: 158 LLKGALARLQATVIRTSIRQGEHWRRHQFSWINEWEECATRDGRVQGMEFVLPDWLYRGV 217 LLKGALARLQ+T+IRT+IR GEHWRRHQFSWINEWEEC TRDGRV+GMEFVLPDW YRGV Sbjct: 121 LLKGALARLQSTIIRTTIRNGEHWRRHQFSWINEWEECTTRDGRVEGMEFVLPDWFYRGV 180 Query: 218 IDRSLVLTIDPAYFSLTGGIERWLYRVARKHAGRQPRGWLFEVAHLHEKSGSLAKPADFA 277 IDRSLVL IDPAYF LTGGIERWLYRVARKHAGRQP+GWLFE+AHLHEKSGSL + DFA Sbjct: 181 IDRSLVLAIDPAYFKLTGGIERWLYRVARKHAGRQPKGWLFEIAHLHEKSGSLVRVTDFA 240 Query: 278 FDLRRIAARQPLPGYCLSIERRERRELLRILPSKSFTAPVDGAVNQLGTSGVHTIGTPGV 337 LRRIAARQPLPGY L IER RRELLRI+P+ T PVDGAV+ +GTS + IG Sbjct: 241 LQLRRIAARQPLPGYRLRIERNGRRELLRIVPAHLSTVPVDGAVDGVGTSHANGIGISHA 300 Query: 338 PVSGFRECKPQLTLWPGNTIACPNLESNLESNCCSGAARLADNTDIRAQPPTEHPS-QPS 396 +SG R +PQLTLWP I NLESN ESN CS AA+ ADN AQ ++ QPS Sbjct: 301 ALSGLRTHQPQLTLWPETAIPGLNLESNKESNSCSWAAQTADNPATAAQQRSKLSCRQPS 360 Query: 397 LPLSGRKTGGMR 408 LPLS RK GG R Sbjct: 361 LPLS-RKPGGER 371 >ref|ZP_07026224.1| Replication initiator protein A [Afipia sp. 1NLS2] gb|EFI53366.1| Replication initiator protein A [Afipia sp. 1NLS2] Length = 371 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 289/372 (77%), Positives = 311/372 (83%), Gaps = 2/372 (0%) Query: 38 MSSRRLITPSERSKLDPFVVATGDASPRDQRNLMERPFFSLAKAKRTRPILYEAGDIRVE 97 M+SRRLIT SERSKLDPF+VATGDASPRDQR+LMERPFFSLAKA+RT PILYEA +RVE Sbjct: 1 MTSRRLITASERSKLDPFIVATGDASPRDQRDLMERPFFSLAKARRTAPILYEAAGVRVE 60 Query: 98 VYAVSEHGMATIWDADVLIWAASQIVEAENLGLKTSRFLRFTPYQLLTAVGRQTGARDYK 157 VYAV EHGMATIWDADVLIWAASQIVEAENLG KTSRFLRFTPYQLLTA+GRQTGARDYK Sbjct: 61 VYAVPEHGMATIWDADVLIWAASQIVEAENLGFKTSRFLRFTPYQLLTAIGRQTGARDYK 120 Query: 158 LLKGALARLQATVIRTSIRQGEHWRRHQFSWINEWEECATRDGRVQGMEFVLPDWLYRGV 217 LLKGALARLQ+TVI T+IR GEHWRRHQFSWINEWEEC TRDGRV+GMEFVLPDW YRGV Sbjct: 121 LLKGALARLQSTVIHTTIRNGEHWRRHQFSWINEWEECTTRDGRVEGMEFVLPDWFYRGV 180 Query: 218 IDRSLVLTIDPAYFSLTGGIERWLYRVARKHAGRQPRGWLFEVAHLHEKSGSLAKPADFA 277 IDRSLVL IDPAYF LTGGIERWLYRVARKHAGRQP+GWLFE+AHLHEKSGSL + +DFA Sbjct: 181 IDRSLVLAIDPAYFRLTGGIERWLYRVARKHAGRQPKGWLFEIAHLHEKSGSLVRVSDFA 240 Query: 278 FDLRRIAARQPLPGYCLSIERRERRELLRILPSKSFTAPVDGAVNQLGTSGVHTIGTPGV 337 +RRIAARQPLPGY L IE + RRE LRILP++S T PVDGAV LGTS + IGTP Sbjct: 241 LQIRRIAARQPLPGYRLRIECQGRRETLRILPARSSTVPVDGAVETLGTSHANGIGTPHA 300 Query: 338 PVSGFRECKPQLTLWPGNTIACPNLESNLESNCCSGAARLADNTDIRAQPPTEHPS-QPS 396 +SG R +PQLTLWP I NLESN ESN +AR AD A +E P QPS Sbjct: 301 ALSGLRTHEPQLTLWPETAIPGLNLESNSESNSSCWSARSADKPATSATQASEPPGRQPS 360 Query: 397 LPLSGRKTGGMR 408 LP GRK GG R Sbjct: 361 LPF-GRKPGGKR 371 >ref|YP_004302030.1| Replication protein A [Polymorphum gilvum SL003B-26A1] gb|ADZ68735.1| Replication protein A [Polymorphum gilvum SL003B-26A1] Length = 398 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 266/343 (77%), Positives = 283/343 (82%), Gaps = 1/343 (0%) Query: 38 MSSRRLITPSERSKLDPFVVATGDASPRDQRNLMERPFFSLAKAKRTRPILYEAGDIRVE 97 M RRLITPSER+ LDPFVVATGDA PRDQR+LMERPFFSLAKAKR PI YEAGD+RVE Sbjct: 1 MQRRRLITPSERNTLDPFVVATGDAKPRDQRDLMERPFFSLAKAKRVVPINYEAGDVRVE 60 Query: 98 VYAVSEHGMATIWDADVLIWAASQIVEAENLGLKTSRFLRFTPYQLLTAVGRQTGARDYK 157 V AV EHGMATIWDADVLIWAASQIVEAENLGL+TSRFLRFTPYQLLTA+GR+TGARDYK Sbjct: 61 VLAVQEHGMATIWDADVLIWAASQIVEAENLGLRTSRFLRFTPYQLLTAIGRETGARDYK 120 Query: 158 LLKGALARLQATVIRTSIRQGEHWRRHQFSWINEWEECATRDGRVQGMEFVLPDWLYRGV 217 LLKGAL RLQ+TVIRT+IR GE+WRRHQFSWINEWEE DGRV+GMEFVLPDW YRGV Sbjct: 121 LLKGALTRLQSTVIRTNIRHGENWRRHQFSWINEWEELTRADGRVEGMEFVLPDWFYRGV 180 Query: 218 IDRSLVLTIDPAYFSLTGGIERWLYRVARKHAGRQPRGWLFEVAHLHEKSGSLAKPADFA 277 IDRSLVLTIDPAYF LTGGIERWLYRVARKHAGRQP GWLF+V HLHEKSGSL + +DFA Sbjct: 181 IDRSLVLTIDPAYFRLTGGIERWLYRVARKHAGRQPGGWLFDVPHLHEKSGSLVRVSDFA 240 Query: 278 FDLRRIAARQPLPGYCLSIERRERRELLRILPSKSFTAPVDGAVNQLGTSGVHTIGTPGV 337 LRRIA RQPLPGY L IER RRELLRILP+ T PVD AV +GTS G Sbjct: 241 LQLRRIALRQPLPGYRLRIEREGRRELLRILPAGPSTPPVDKAVEAIGTSHADLSGFRTQ 300 Query: 338 PVSGFRECKPQLTLWPGNTIACPNLESNLESNCCSGAARLADN 380 VSG R KPQL+LWP TI NLESN ESN G AR +N Sbjct: 301 TVSGLRTQKPQLSLWPETTIPGLNLESNRESNLF-GRARDVEN 342 >gb|EGP54463.1| replication protein A [Agrobacterium tumefaciens F2] Length = 398 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/343 (76%), Positives = 285/343 (83%), Gaps = 1/343 (0%) Query: 38 MSSRRLITPSERSKLDPFVVATGDASPRDQRNLMERPFFSLAKAKRTRPILYEAGDIRVE 97 M RRLITPSER+ LDPFVVATGDA PRDQR+LMERPFFSLAKAKR PILYEAGD+RVE Sbjct: 1 MQRRRLITPSERNTLDPFVVATGDARPRDQRDLMERPFFSLAKAKRVVPILYEAGDVRVE 60 Query: 98 VYAVSEHGMATIWDADVLIWAASQIVEAENLGLKTSRFLRFTPYQLLTAVGRQTGARDYK 157 V AV EHGMATIWDADVLIWAASQIVEAENLGL+TSRFLRFTPYQLLTA+GR+TGARDYK Sbjct: 61 VLAVQEHGMATIWDADVLIWAASQIVEAENLGLRTSRFLRFTPYQLLTAIGRETGARDYK 120 Query: 158 LLKGALARLQATVIRTSIRQGEHWRRHQFSWINEWEECATRDGRVQGMEFVLPDWLYRGV 217 LLKGAL+RLQ+TVIRT+IRQGE+WRRHQFSWINEWEE + DGRV+GMEFVLPDW YRGV Sbjct: 121 LLKGALSRLQSTVIRTNIRQGENWRRHQFSWINEWEELSRADGRVEGMEFVLPDWFYRGV 180 Query: 218 IDRSLVLTIDPAYFSLTGGIERWLYRVARKHAGRQPRGWLFEVAHLHEKSGSLAKPADFA 277 +DRSLVLTIDPAYF L+GGIERWLYRVARKHAGRQP GWLF+V HLHEKSGSL + +DFA Sbjct: 181 VDRSLVLTIDPAYFRLSGGIERWLYRVARKHAGRQPGGWLFDVPHLHEKSGSLVRVSDFA 240 Query: 278 FDLRRIAARQPLPGYCLSIERRERRELLRILPSKSFTAPVDGAVNQLGTSGVHTIGTPGV 337 LRRIA RQPLPGY L IER RRELLRI+P APVD AV+ +G S G Sbjct: 241 LQLRRIALRQPLPGYRLRIEREGRRELLRIVPVSPSAAPVDKAVDAIGISHAALSGFRTQ 300 Query: 338 PVSGFRECKPQLTLWPGNTIACPNLESNLESNCCSGAARLADN 380 VSG R PQL+LWP TI NLESN ESN G AR +N Sbjct: 301 AVSGLRTHAPQLSLWPETTIPGLNLESNRESNIV-GRARDVEN 342