BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0004.p         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_07026227.1| conserved hypothetical protein [Afipia sp. 1N...   105   2e-21
ref|YP_002277142.1| hypothetical protein Gdia_2795 [Gluconacetob...    89   2e-16
ref|ZP_06888619.1| conserved hypothetical protein [Methylosinus ...    78   5e-13
ref|ZP_06888450.1| conserved hypothetical protein [Methylosinus ...    75   3e-12
ref|ZP_08316002.1| hypothetical protein SXCC_01959 [Gluconacetob...    62   3e-08

>ref|ZP_07026227.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI53369.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 74

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 55/69 (79%)

Query: 1  MPTQYWRSPETIERLNRLERPGFALEFLRRNADYRRDFARTERQIARGESDPNTIRTSFA 60
          MPT+YWRSPETI+RLNRLERPGFA+EFLRRN DYRRDF RT+RQI R   D  T R   A
Sbjct: 6  MPTEYWRSPETIDRLNRLERPGFAVEFLRRNHDYRRDFVRTQRQITRASVDAETARVGLA 65

Query: 61 RRWRLRCRP 69
          RRW LR RP
Sbjct: 66 RRWGLRFRP 74


>ref|YP_002277142.1| hypothetical protein Gdia_2795 [Gluconacetobacter diazotrophicus
          PAl 5]
 gb|ACI52527.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
          PAl 5]
          Length = 71

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 52/66 (78%)

Query: 1  MPTQYWRSPETIERLNRLERPGFALEFLRRNADYRRDFARTERQIARGESDPNTIRTSFA 60
          MP   WRSPETIE+LNRL+RPGFA E LRRN+ YRRD+ART R+I RG  DP+  R++ A
Sbjct: 1  MPISDWRSPETIEQLNRLDRPGFAAELLRRNSAYRRDYARTLRRIERGAVDPDQARSNLA 60

Query: 61 RRWRLR 66
          RRW LR
Sbjct: 61 RRWGLR 66


>ref|ZP_06888619.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gb|EFH02887.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 69

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 50/68 (73%)

Query: 1  MPTQYWRSPETIERLNRLERPGFALEFLRRNADYRRDFARTERQIARGESDPNTIRTSFA 60
          MPT +W+SP+++++LN L+R GFALEFLRRN +YR+D   T R+I RG  D  T  +S A
Sbjct: 1  MPTNFWKSPDSVKQLNDLDRSGFALEFLRRNPEYRQDHRETLRRIERGAVDEATALSSLA 60

Query: 61 RRWRLRCR 68
          RRW L+ R
Sbjct: 61 RRWGLQFR 68


>ref|ZP_06888450.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gb|EFH03087.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 69

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 1  MPTQYWRSPETIERLNRLERPGFALEFLRRNADYRRDFARTERQIARGESDPNTIRTSFA 60
          MPT +W+SP++I++LN L+  GFALEFLRRN  YR+D+  T R+I RG  D  T  +S A
Sbjct: 1  MPTSFWKSPDSIKQLNDLDPSGFALEFLRRNPRYRQDYRETLRRIERGAVDEATALSSLA 60

Query: 61 RRWRLRCR 68
          RRW L+ R
Sbjct: 61 RRWGLQFR 68


>ref|ZP_08316002.1| hypothetical protein SXCC_01959 [Gluconacetobacter sp. SXCC-1]
 gb|EGG77569.1| hypothetical protein SXCC_01959 [Gluconacetobacter sp. SXCC-1]
          Length = 72

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 45/65 (69%)

Query: 1  MPTQYWRSPETIERLNRLERPGFALEFLRRNADYRRDFARTERQIARGESDPNTIRTSFA 60
          MPT +WRSPE  + ++RL+R GFA+EFLRRN  YRRD+AR +R++ R   D      +FA
Sbjct: 1  MPTSFWRSPELRDHISRLDRSGFAVEFLRRNPTYRRDYARLQRRLGRRGVDSAAECAAFA 60

Query: 61 RRWRL 65
          + W L
Sbjct: 61 QCWGL 65