BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0111.0009.p         (159 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_578128.1| protein of unknown function DUF395, YeeE/YedE [...   178   2e-43
emb|CBW25781.1| putative membrane protein [Bacteriovorax marinus...   137   7e-31
ref|YP_574643.1| hypothetical protein Csal_2597 [Chromohalobacte...   136   9e-31
ref|YP_003885047.1| gene II and X protein [Dickeya dadantii 3937...   135   3e-30
ref|YP_001766707.1| protein of unknown function DUF395 YeeE/YedE...   134   3e-30

>ref|YP_578128.1| protein of unknown function DUF395, YeeE/YedE [Nitrobacter
           hamburgensis X14]
 gb|ABE63668.1| protein of unknown function DUF395, YeeE/YedE [Nitrobacter
           hamburgensis X14]
          Length = 162

 Score =  178 bits (451), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/142 (69%), Positives = 115/142 (80%), Gaps = 1/142 (0%)

Query: 4   LVSFICGLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATGFAIARRR 63
           L S  CGL+FGAGLLISGMT P KVL FLD+FGAWDATLAFVMAGAVAV A GFA+ARRR
Sbjct: 5   LASLGCGLLFGAGLLISGMTQPDKVLDFLDVFGAWDATLAFVMAGAVAVTAAGFALARRR 64

Query: 64  TTPAFXARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLPIVVYVVAM 123
             P    +  WPDR+DIDA LV GAVLFGIGWGL+G+CPGPALVNLAGLS P++V+V+AM
Sbjct: 65  GIPLLAGKLRWPDRSDIDASLVTGAVLFGIGWGLIGLCPGPALVNLAGLSGPVIVFVIAM 124

Query: 124 LAGMIGQNLFGRNLWRRRAAAP 145
            AGM G +L  R+ + RR+ +P
Sbjct: 125 AAGMAGHDLL-RDRFNRRSDSP 145


>emb|CBW25781.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 140

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 98/143 (68%), Gaps = 6/143 (4%)

Query: 1   MAPLVSFICGLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATGFAIA 60
           M  +V+ + G +F  GL+ISGMT+P+KV+GFLD+FG+WD +LAFVM GA+A+    F   
Sbjct: 1   MMNVVALLSGFLFAIGLVISGMTNPKKVIGFLDIFGSWDYSLAFVMIGAIAINVLTFNFV 60

Query: 61  RRRTTPAFXARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLPIVVYV 120
           +R+  P F   F+ P +  ID+ L+ GA LFGIGWGLVGICPGP +VNL  L+    ++V
Sbjct: 61  KRKK-PLFSLDFILPLKKSIDSRLIIGASLFGIGWGLVGICPGPGIVNLMALNSSAALFV 119

Query: 121 VAMLAGMIGQNLFGR--NLWRRR 141
           V+M+AGM    LF +  N  RR+
Sbjct: 120 VSMVAGMY---LFKKFDNYNRRQ 139


>ref|YP_574643.1| hypothetical protein Csal_2597 [Chromohalobacter salexigens DSM
           3043]
 gb|ABE59944.1| protein of unknown function DUF395, YeeE/YedE [Chromohalobacter
           salexigens DSM 3043]
          Length = 137

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 68/126 (53%), Positives = 86/126 (68%)

Query: 1   MAPLVSFICGLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATGFAIA 60
           M  L  ++ GL+FG GL ISGMTDP +V+GFLD+ G WD TL FV+ GAV     G+ + 
Sbjct: 1   MKALAGYVAGLLFGLGLAISGMTDPARVIGFLDVAGDWDPTLVFVLGGAVVTTFIGYRLV 60

Query: 61  RRRTTPAFXARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLPIVVYV 120
            RR TP F +RF  P R D+D  L+ GA LFGIGWGL G CPGPA+ +L GLS P+  +V
Sbjct: 61  WRRQTPLFESRFQLPTRRDLDTRLLGGAALFGIGWGLSGYCPGPAVASLPGLSWPLAAFV 120

Query: 121 VAMLAG 126
           V ++AG
Sbjct: 121 VTLIAG 126


>ref|YP_003885047.1| gene II and X protein [Dickeya dadantii 3937]
 gb|ADN00491.1| gene II and X protein [Dickeya dadantii 3937]
          Length = 142

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/145 (53%), Positives = 95/145 (65%), Gaps = 3/145 (2%)

Query: 1   MAPLVSFICGLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATGFAIA 60
           M  L SF+ GL+FG GLLISGM +PQKVLGFLD+   WD +LA VM GA+AV A GF + 
Sbjct: 1   MNNLFSFLSGLVFGLGLLISGMANPQKVLGFLDITRQWDPSLALVMGGALAVGALGFRVV 60

Query: 61  RRRTTPAFXARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLPIVVYV 120
            R + P   A F  P +  +D PLVAG ++FGIGWGL GICPGPALV L+  +    V+ 
Sbjct: 61  GRMSKPLCVASFSLPLKKAVDKPLVAGGLMFGIGWGLAGICPGPALVLLSYGTAKGWVFF 120

Query: 121 VAMLAGMIGQNLFGRNLWRRRAAAP 145
           V+MLAGM     F     R+RA AP
Sbjct: 121 VSMLAGMGLYEWFST---RQRARAP 142


>ref|YP_001766707.1| protein of unknown function DUF395 YeeE/YedE [Methylobacterium
           radiotolerans JCM 2831]
 gb|ACB27905.1| protein of unknown function DUF395 YeeE/YedE [Methylobacterium
           radiotolerans JCM 2831]
          Length = 141

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 91/126 (72%), Gaps = 2/126 (1%)

Query: 4   LVSFICGLIFGAGLLISGMTDPQKVLGFLDLFGAWDATLAFVMAGAVAVAATGFAIARRR 63
           L + + GL+FG GL +SGM DP++VLGFLD+ GAWD +LAFV+AGAV V+A G+AI  R 
Sbjct: 7   LAALVSGLLFGVGLALSGMMDPERVLGFLDVAGAWDPSLAFVLAGAVGVSALGYAIKARM 66

Query: 64  TTPAFXARFLWPDRNDIDAPLVAGAVLFGIGWGLVGICPGPALVNLAGLSLP-IVVYVVA 122
             PA   RF  P    +DA L+AGA LFG+GWGL G CPGPAL  L+ L LP + ++V A
Sbjct: 67  AQPALAPRFEVPTNRSVDARLLAGAALFGVGWGLAGFCPGPALAGLS-LGLPEVALFVAA 125

Query: 123 MLAGMI 128
           MLAGM+
Sbjct: 126 MLAGML 131