BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0111.0007.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769204.1| hypothetical protein blr2564 [Bradyrhizobium ja... 351 5e-95 ref|ZP_08628717.1| protein of unknown function DUF159 [Bradyrhiz... 337 7e-91 ref|YP_568384.1| hypothetical protein RPD_1245 [Rhodopseudomonas... 337 1e-90 ref|YP_534167.1| hypothetical protein RPC_4325 [Rhodopseudomonas... 333 2e-89 ref|YP_579140.1| hypothetical protein Nham_4011 [Nitrobacter ham... 331 6e-89 >ref|NP_769204.1| hypothetical protein blr2564 [Bradyrhizobium japonicum USDA 110] dbj|BAC47829.1| blr2564 [Bradyrhizobium japonicum USDA 110] Length = 254 Score = 351 bits (901), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 177/254 (69%), Positives = 204/254 (80%), Gaps = 1/254 (0%) Query: 1 MCGRFVITSPPAALREMFGYIEQPNFPPRYNVAPTQPIPVVLLQNGGRHFQLMRWGLIPS 60 MCGRFVITS PAALR++FGY+EQPNFPPRYNVAPTQPIPVVL++NG RHF+LMRWGL+P Sbjct: 1 MCGRFVITSAPAALRQLFGYVEQPNFPPRYNVAPTQPIPVVLVENGARHFRLMRWGLLPG 60 Query: 61 WVKDPRTFSLLINARSETVREKPAFKNAIKRRRALIPADGYYEWQDAGGRKRPFFIHRRD 120 WVKDP+ F+LLINARSETV EKPAFK AI+RRR LIPADGYYEW+ GRK+PFFIHR D Sbjct: 61 WVKDPKGFTLLINARSETVLEKPAFKRAIRRRRGLIPADGYYEWKAVDGRKQPFFIHRAD 120 Query: 121 GHPLAFAALAETWMGPNGEEQDTVAIVTAPASPDLAQLHHRVPVTIRPEQFARWLDCLPN 180 G PL FAA+ ETW GPNGEE DTVAIVTA A DLA LH RVPVTI P F RWLD + Sbjct: 121 GAPLGFAAVFETWAGPNGEELDTVAIVTAAAGEDLAALHDRVPVTISPRDFERWLDVRGD 180 Query: 181 DVDDVMPMLKGPEVGEFAWHQVTMRVNAVANDDAQLLLPMTAEEIAAEDAPQQ-KKAAPR 239 +VD ++P++ P +GEFAWH V+ RVN VANDD QLLLP++AEE+ AE + K+ A + Sbjct: 181 EVDAILPLMIAPRIGEFAWHPVSTRVNRVANDDEQLLLPISAEEMEAELEASKPKRVARK 240 Query: 240 KPTMREDDGQGSLF 253 DDGQGSLF Sbjct: 241 AAAASSDDGQGSLF 254 >ref|ZP_08628717.1| protein of unknown function DUF159 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08522.1| protein of unknown function DUF159 [Bradyrhizobiaceae bacterium SG-6C] Length = 267 Score = 337 bits (865), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 160/253 (63%), Positives = 189/253 (74%), Gaps = 1/253 (0%) Query: 1 MCGRFVITSPPAALREMFGYIEQPNFPPRYNVAPTQPIPVVLLQNGGRHFQLMRWGLIPS 60 MCGR++I S P ALR +FGY EQPNFPPRYNVAPTQP+PVV+ +NG R F+LMRWG +PS Sbjct: 16 MCGRYIIASSPDALRRLFGYGEQPNFPPRYNVAPTQPVPVVIAENGARAFRLMRWGFLPS 75 Query: 61 WVKDPRTFSLLINARSETVREKPAFKNAIKRRRALIPADGYYEWQDAGGRKRPFFIHRRD 120 WVKDP F+L+INARSET+ EKP+F+NAIKRRR L+PADGYYEWQ + RKRPFFI RRD Sbjct: 76 WVKDPGKFALVINARSETILEKPSFRNAIKRRRCLLPADGYYEWQVSPSRKRPFFIRRRD 135 Query: 121 GHPLAFAALAETWMGPNGEEQDTVAIVTAPASPDLAQLHHRVPVTIRPEQFARWLDCLPN 180 G P+AFA +AETW GPNGEE DTVAIVT A P++A LH RVPVTI P F RWLD + Sbjct: 136 GAPIAFAGVAETWAGPNGEEVDTVAIVTTAAGPEMAMLHERVPVTIAPNDFDRWLDVM-T 194 Query: 181 DVDDVMPMLKGPEVGEFAWHQVTMRVNAVANDDAQLLLPMTAEEIAAEDAPQQKKAAPRK 240 D DD M ML P G F WH+V+ VN VAND A L+ P + E+IA +A ++ + Sbjct: 195 DADDAMAMLVAPPRGTFVWHEVSTAVNRVANDSADLIRPSSPEDIAIAEAASKRPKERAR 254 Query: 241 PTMREDDGQGSLF 253 ED GQGSLF Sbjct: 255 KISEEDSGQGSLF 267 >ref|YP_568384.1| hypothetical protein RPD_1245 [Rhodopseudomonas palustris BisB5] gb|ABE38483.1| protein of unknown function DUF159 [Rhodopseudomonas palustris BisB5] Length = 259 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 163/259 (62%), Positives = 196/259 (75%), Gaps = 6/259 (2%) Query: 1 MCGRFVITSPPAALREMFGYIEQPNFPPRYNVAPTQPIPVVLLQNGGRHFQLMRWGLIPS 60 MCGRFVITS PAA+RE FGY +QPNFP RYN+APTQPIPVV+++NG R F+LMRWGL+PS Sbjct: 1 MCGRFVITSAPAAIREAFGYADQPNFPARYNIAPTQPIPVVIVENGVRRFRLMRWGLLPS 60 Query: 61 WVKDPRTFSLLINARSETVREKPAFKNAIKRRRALIPADGYYEWQDAGGRKRPFFIHRRD 120 WVKDPR F+LLINAR+ETV +KPAF+NAIKRRR L+P+DGY+EW+ AG K+P+FIH RD Sbjct: 61 WVKDPRKFTLLINARAETVLDKPAFRNAIKRRRCLVPSDGYFEWKPAGSHKQPYFIHPRD 120 Query: 121 GHPLAFAALAETWMGPNGEEQDTVAIVTAPASPDLAQLHHRVPVTIRPEQFARWLDCLPN 180 G P+ FAAL ETW+GPNGEE DT+AIVT AS LA LH RVPVTI P +ARWLDC Sbjct: 121 GGPVGFAALWETWVGPNGEELDTIAIVTTAASGGLADLHDRVPVTIAPPDYARWLDCADV 180 Query: 181 DVDDVMPMLKGPEVGEFAWHQVTMRVNAVANDDAQLLLPMTAEEIAAE------DAPQQK 234 D + +L+ P G F WH V+ VN VAND+AQL+LP+ AEE+ +E + K Sbjct: 181 DAESAWSLLRPPAEGVFVWHPVSTAVNRVANDNAQLILPIAAEEMESEARAGAAKRAKSK 240 Query: 235 KAAPRKPTMREDDGQGSLF 253 KP +DDGQGSLF Sbjct: 241 PVPNSKPASSDDDGQGSLF 259 >ref|YP_534167.1| hypothetical protein RPC_4325 [Rhodopseudomonas palustris BisB18] gb|ABD89848.1| protein of unknown function DUF159 [Rhodopseudomonas palustris BisB18] Length = 257 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 166/257 (64%), Positives = 188/257 (73%), Gaps = 4/257 (1%) Query: 1 MCGRFVITSPPAALREMFGYIEQPNFPPRYNVAPTQPIPVVLLQNGGRHFQLMRWGLIPS 60 MCGRFVITSPPAA+R FGY EQPNFP RYN+APTQPIPVV+L NG R F+LMRWGLIPS Sbjct: 1 MCGRFVITSPPAAVRLAFGYAEQPNFPARYNIAPTQPIPVVILDNGARRFRLMRWGLIPS 60 Query: 61 WVKDPRTFSLLINARSETVREKPAFKNAIKRRRALIPADGYYEWQDAGGRKRPFFIHRRD 120 WVKDPR FSLLINARSETV +KPAF+NA+KRRR L+PADGYYEWQ G K+P+FIH D Sbjct: 61 WVKDPRNFSLLINARSETVLDKPAFRNAMKRRRCLVPADGYYEWQSGGKPKQPYFIHPAD 120 Query: 121 GHPLAFAALAETWMGPNGEEQDTVAIVTAPASPDLAQLHHRVPVTIRPEQFARWLDCLPN 180 G PL FA LAETW+GPNGEE DTVAIVT AS +A LH RVPVTI P +ARWLDC Sbjct: 121 GVPLGFAGLAETWVGPNGEELDTVAIVTTAASKPMAVLHDRVPVTIAPGDYARWLDCAAV 180 Query: 181 DVDDVMPMLKGPEVGEFAWHQVTMRVNAVANDDAQLLLPMTAEEIAAEDAPQQKKAAPRK 240 ++ +L P G WH V+ VN VANDDAQL+LP+ E A + P+ KAA Sbjct: 181 SAEEAAMLLHPPAEGALRWHPVSTAVNRVANDDAQLILPIAVGEPAPIEPPKPAKAAATS 240 Query: 241 ----PTMREDDGQGSLF 253 D+GQGSLF Sbjct: 241 RRAVKAASGDEGQGSLF 257 >ref|YP_579140.1| hypothetical protein Nham_4011 [Nitrobacter hamburgensis X14] gb|ABE64680.1| protein of unknown function DUF159 [Nitrobacter hamburgensis X14] Length = 254 Score = 331 bits (849), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 164/255 (64%), Positives = 193/255 (75%), Gaps = 3/255 (1%) Query: 1 MCGRFVITSPPAALREMFGYIEQPNFPPRYNVAPTQPIPVVLLQNGGRHFQLMRWGLIPS 60 MCGR+VI SPP A+R+ FGY EQPNFPPRYN+APTQP+PVV+ +NG RHF+LMRWGLIP+ Sbjct: 1 MCGRYVILSPPEAMRQAFGYAEQPNFPPRYNIAPTQPVPVVVRENGARHFRLMRWGLIPA 60 Query: 61 WVKDPRTFSLLINARSETVREKPAFKNAIKRRRALIPADGYYEWQDAGGRKRPFFIHRRD 120 WVKDPR F+L+INAR+ETV +KPAFKNA+KRRR L+P DGYYEW + RKRPFFI R+ Sbjct: 61 WVKDPRQFALVINARAETVLDKPAFKNAMKRRRCLLPVDGYYEWHQSEERKRPFFIRPRN 120 Query: 121 GHPLAFAALAETWMGPNGEEQDTVAIVTAPASPDLAQLHHRVPVTIRPEQFARWLDCLPN 180 G +AFA L+ETW+GPNGEE DTVAIVT A LA LH R PVTI +ARWLD Sbjct: 121 GGLIAFAGLSETWVGPNGEELDTVAIVTTAARGGLATLHSRAPVTIASGDYARWLDGDAT 180 Query: 181 DVDDVMPMLKGPEVGEFAWHQVTMRVNAVANDDAQLLLPMTAEEIAAEDAPQQKK--AAP 238 D M L+ PE GEF WH+V+ RVN VANDDAQLLLP++ E+ AE AP+ K AA Sbjct: 181 DAGAAMLSLRAPEDGEFVWHEVSTRVNRVANDDAQLLLPISEEQAEAE-APKVSKNAAAR 239 Query: 239 RKPTMREDDGQGSLF 253 + DDGQGSLF Sbjct: 240 KAAPAASDDGQGSLF 254