BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0111.0004.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_534170.1| hypothetical protein RPC_4328 [Rhodopseudomonas...   224   4e-57
ref|YP_579145.1| hypothetical protein Nham_4016 [Nitrobacter ham...   221   4e-56
ref|NP_769201.1| hypothetical protein bll2561 [Bradyrhizobium ja...   219   9e-56
ref|YP_783290.1| hypothetical protein RPE_4386 [Rhodopseudomonas...   213   7e-54
ref|NP_946423.1| hypothetical protein RPA1072 [Rhodopseudomonas ...   213   9e-54

>ref|YP_534170.1| hypothetical protein RPC_4328 [Rhodopseudomonas palustris BisB18]
 gb|ABD89851.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 125

 Score =  224 bits (571), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 103/125 (82%), Positives = 116/125 (92%)

Query: 1   MIRAFLAVVILMSACLLTPARAQDAAAPFDGDLQRLAEILGALHYLRGICGSNEGAKWRN 60
           M+  F+A++I+++ C L P RAQDAAAPFDGDLQRLAEILGALHYLRGICG+NEG KWRN
Sbjct: 1   MLSRFIAILIVVATCGLAPVRAQDAAAPFDGDLQRLAEILGALHYLRGICGANEGTKWRN 60

Query: 61  EMQALIDAETPSGDRRARMIAGFNRGYNGFQQTYRTCTPAATVAIRRYIEEGSKISRDLT 120
           EMQAL+DAETPSG+RR RMIAGFNRGYNGFQQTYRTCTPAA +AIRRY+EEGS+ISRDLT
Sbjct: 61  EMQALVDAETPSGERRTRMIAGFNRGYNGFQQTYRTCTPAADIAIRRYLEEGSRISRDLT 120

Query: 121 ARYAN 125
           ARYAN
Sbjct: 121 ARYAN 125


>ref|YP_579145.1| hypothetical protein Nham_4016 [Nitrobacter hamburgensis X14]
 gb|ABE64685.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 125

 Score =  221 bits (562), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 104/125 (83%), Positives = 113/125 (90%)

Query: 1   MIRAFLAVVILMSACLLTPARAQDAAAPFDGDLQRLAEILGALHYLRGICGSNEGAKWRN 60
           M ++  AVV++ + C   PARAQ+ AAPFDGDLQRLAEILG LHYLRGICG+NEGAKWRN
Sbjct: 1   MRKSVFAVVLVTAICCALPARAQEGAAPFDGDLQRLAEILGTLHYLRGICGANEGAKWRN 60

Query: 61  EMQALIDAETPSGDRRARMIAGFNRGYNGFQQTYRTCTPAATVAIRRYIEEGSKISRDLT 120
           EMQALIDAETPSG+RRARMIAGFNRGYNGFQQTYR CTPAA VAIRRYIEEG+KISRDLT
Sbjct: 61  EMQALIDAETPSGERRARMIAGFNRGYNGFQQTYRVCTPAANVAIRRYIEEGAKISRDLT 120

Query: 121 ARYAN 125
           ARYAN
Sbjct: 121 ARYAN 125


>ref|NP_769201.1| hypothetical protein bll2561 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47826.1| bll2561 [Bradyrhizobium japonicum USDA 110]
          Length = 125

 Score =  219 bits (559), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 104/121 (85%), Positives = 109/121 (90%)

Query: 5   FLAVVILMSACLLTPARAQDAAAPFDGDLQRLAEILGALHYLRGICGSNEGAKWRNEMQA 64
           FLA+  L+ AC   P RAQD AAPFD DLQRLAEILG LHYLRGICGSNEG KWR+EMQA
Sbjct: 5   FLAIFALILACASVPTRAQDVAAPFDADLQRLAEILGGLHYLRGICGSNEGNKWRSEMQA 64

Query: 65  LIDAETPSGDRRARMIAGFNRGYNGFQQTYRTCTPAATVAIRRYIEEGSKISRDLTARYA 124
           LIDAETPSG+RR RMIAGFNRGYNGFQQTYR+CTPAATVAIRRYIEEGSKISRDLTARYA
Sbjct: 65  LIDAETPSGERRTRMIAGFNRGYNGFQQTYRSCTPAATVAIRRYIEEGSKISRDLTARYA 124

Query: 125 N 125
           N
Sbjct: 125 N 125


>ref|YP_783290.1| hypothetical protein RPE_4386 [Rhodopseudomonas palustris BisA53]
 gb|ABJ08310.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 125

 Score =  213 bits (542), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 99/125 (79%), Positives = 110/125 (88%)

Query: 1   MIRAFLAVVILMSACLLTPARAQDAAAPFDGDLQRLAEILGALHYLRGICGSNEGAKWRN 60
           M+  F AV++L++ C   PARAQ+ AAPFD DLQRL+EILG LHYLRGICG+NEGAKWR+
Sbjct: 1   MLSRFFAVLLLVATCASLPARAQEGAAPFDADLQRLSEILGTLHYLRGICGANEGAKWRS 60

Query: 61  EMQALIDAETPSGDRRARMIAGFNRGYNGFQQTYRTCTPAATVAIRRYIEEGSKISRDLT 120
           EMQALIDAETPSG+RR RMIA FNRGYNGFQ TYRTCTPAA +AIRRY EEGSKISRDLT
Sbjct: 61  EMQALIDAETPSGERRTRMIAAFNRGYNGFQTTYRTCTPAADIAIRRYFEEGSKISRDLT 120

Query: 121 ARYAN 125
           ARYAN
Sbjct: 121 ARYAN 125


>ref|NP_946423.1| hypothetical protein RPA1072 [Rhodopseudomonas palustris CGA009]
 emb|CAE26515.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 146

 Score =  213 bits (542), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 114/125 (91%)

Query: 1   MIRAFLAVVILMSACLLTPARAQDAAAPFDGDLQRLAEILGALHYLRGICGSNEGAKWRN 60
           M++  LAV+++++ C L PARA+D AAPFD +LQRLAEILG LHYLRGICG ++GAKWR+
Sbjct: 22  MLKRSLAVLMILACCGLVPARAEDGAAPFDAELQRLAEILGTLHYLRGICGGSDGAKWRS 81

Query: 61  EMQALIDAETPSGDRRARMIAGFNRGYNGFQQTYRTCTPAATVAIRRYIEEGSKISRDLT 120
           EMQALIDAETPSG+RR R+IA FNRGYNGFQQTYRTCTPAATVAIRRY+EEGSK+SRDLT
Sbjct: 82  EMQALIDAETPSGERRTRLIAAFNRGYNGFQQTYRTCTPAATVAIRRYLEEGSKLSRDLT 141

Query: 121 ARYAN 125
           ARYAN
Sbjct: 142 ARYAN 146