BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0071.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770247.1| hypothetical protein blr3607 [Bradyrhizobium ja... 538 e-151 ref|YP_002362670.1| hypothetical protein Msil_2378 [Methylocella... 220 2e-55 ref|YP_472291.1| hypothetical protein RHE_PE00126 [Rhizobium etl... 139 1e-30 ref|YP_771629.1| hypothetical protein pRL110595 [Rhizobium legum... 131 2e-28 ref|YP_002985173.1| hypothetical protein Rleg_7206 [Rhizobium le... 128 2e-27 >ref|NP_770247.1| hypothetical protein blr3607 [Bradyrhizobium japonicum USDA 110] dbj|BAC48872.1| blr3607 [Bradyrhizobium japonicum USDA 110] Length = 573 Score = 538 bits (1386), Expect = e-151, Method: Compositional matrix adjust. Identities = 266/308 (86%), Positives = 284/308 (92%), Gaps = 5/308 (1%) Query: 1 VLDQINGRILQFDPKQPNTAPDILKMPGDVQPTDLVVHNDDIMVWDGGVRMLKAAPGQST 60 VLDQ+NGRILQFDPKQPN+ PD+LKMP DVQPTDLVVHNDDIMVWDGGVR LKAAPGQST Sbjct: 68 VLDQVNGRILQFDPKQPNSDPDVLKMPKDVQPTDLVVHNDDIMVWDGGVRTLKAAPGQST 127 Query: 61 RGLGGDVIQLEEVSSRGTDDQVAISAFAQMGSQALSSPTDLLDQDTRAAIVRTTRQPDRQ 120 RG+GGDVIQLEEVSSR DDQVA+SAFAQMGSQA S DLL+Q+TRAAIV+TTRQPDRQ Sbjct: 128 RGIGGDVIQLEEVSSRSADDQVAVSAFAQMGSQAPGSAADLLNQNTRAAIVKTTRQPDRQ 187 Query: 121 YIASRSKGSVIADIIPDKGNAGVRVEIQTMVSNETIGQLGLRVRNQLGTVEFLEIDNSDR 180 Y+ASRSKGSVIADI+PDKGNA VRVEIQTMV+NETIGQL LRVRNQLGTVEFLEIDN DR Sbjct: 188 YVASRSKGSVIADIVPDKGNASVRVEIQTMVTNETIGQLSLRVRNQLGTVEFLEIDNGDR 247 Query: 181 FYVLAEDIPPSGKNASTFVARYAANGRLEGIYELPLENTPVTRRFVTVSGDGDVYFLRTK 240 FYVLAED+PPSGKNASTFVARYAANGRLEGIYELPLENTP+TRRFVTVSGDGDVYFLRTK Sbjct: 248 FYVLAEDVPPSGKNASTFVARYAANGRLEGIYELPLENTPLTRRFVTVSGDGDVYFLRTK 307 Query: 241 PDGVEVVGVGFRPLGKVSVIDVRPX-AAARP----DIKFNATAAVRPSNRQQAIETAFAF 295 PDG+EVVGVGFRPL S+IDVRP AA P +KF+A+AAVRPSNRQQAIETAFAF Sbjct: 308 PDGIEVVGVGFRPLTNASIIDVRPSRTAAAPAPQSGVKFDASAAVRPSNRQQAIETAFAF 367 Query: 296 EGIQWKLT 303 EGIQWKLT Sbjct: 368 EGIQWKLT 375 >ref|YP_002362670.1| hypothetical protein Msil_2378 [Methylocella silvestris BL2] gb|ACK51308.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 555 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/311 (42%), Positives = 179/311 (57%), Gaps = 21/311 (6%) Query: 1 VLDQINGRILQFDPKQPNTAPDILKMPGDVQPTDLVVHNDDIMVWDGGVRMLKAAPGQST 60 +LDQ+N R++ F+PK P L +P V PTDL+V N I VWDG L+A Sbjct: 92 LLDQVNSRVVGFEPKAPGERTRSLALPQGVDPTDLIVANGGIYVWDGKPIALEA-----R 146 Query: 61 RGLGGDVIQLEEVSSRGTDDQVAISAFAQMGSQALSSPTDLLDQDTRAAIVRTTRQPDRQ 120 G GG L + S G D+ S FAQMGS+ TD + AA RT RQ Sbjct: 147 EGGGGLTRSLAQ--SSGAVDETTQSMFAQMGSEE----TDPATRTISAAPART-----RQ 195 Query: 121 YIASRSKGSVIADIIPDKGNAGVRVEIQTMVSNETIGQLGLRVRNQLGTVEFLEIDNSDR 180 +ASR KG + + PD+ A VR+E+ ++ +L ++V ++ G VEFL++D S R Sbjct: 196 LVASRGKGPIAVTVTPDQTGAAVRIEVSQQGASTPFAKLAMKVSDKFGAVEFLDVDRSGR 255 Query: 181 FYVLAEDIPP-SGKNASTFVARYAANGRLEGIYELPLE-NTPVTRRFVTVSGDGDVYFLR 238 YVLAE+IPP +G ASTF+AR++ G EG+YELPL N ++RRFVTVS +GD+YFLR Sbjct: 256 MYVLAENIPPVAGIGASTFIARFSPTGAFEGVYELPLTPNVALSRRFVTVSPEGDIYFLR 315 Query: 239 TKPDGVEVVGVGFRPLGKVSVIDVR---PXAAARPDIKFNATAAVRPSNRQQAIETAFAF 295 T+ V+V+GVGF+P+ ID+R P AA + A AA+ P R + AF Sbjct: 316 TRKGVVDVIGVGFQPMRIGQTIDMRGPSPDYAALAKLGKGAIAAIGPVTRASITQRGLAF 375 Query: 296 EGIQWKLTPXS 306 E W+LTP + Sbjct: 376 EAFTWRLTPAT 386 >ref|YP_472291.1| hypothetical protein RHE_PE00126 [Rhizobium etli CFN 42] gb|ABC93564.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 534 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 150/310 (48%), Gaps = 14/310 (4%) Query: 1 VLDQINGRILQFDPKQPNTAPDILKMPGDVQPTDLVVHNDDIMVWDGGVRMLKAAPGQST 60 +LDQ NGR+L D ++ P+IL +P + P DL V ++++ +W G+ L+ + G Sbjct: 66 ILDQNNGRVLAVDGERSQADPEILPLPENTAPEDLAVVHNELYLWSDGIVPLERSTGADG 125 Query: 61 RGLGGDVIQLEEVSSRGTDDQVAISAFAQMGSQALSSPTDLLDQDTRAAIVRTTRQPDRQ 120 R Q G D S FA MGS ++D+ R+ R P Q Sbjct: 126 RS------QTLRAIDGGDADDYTRSVFASMGSVPPGPLNSIIDEIGRSTSRPQARPPVVQ 179 Query: 121 YIASRSKGSVIADIIPDKGNAGVRVEIQTMVSNETIGQLGLRVRNQLGTVEFLEIDNSDR 180 Y+ SR G ++A++ N + ++ S E L L N++GTVE L+ID + R Sbjct: 180 YVPSRGLGDIVAEV--SAANDKAEILLRRASSEENFLSLQLTGENRIGTVELLDIDTTGR 237 Query: 181 FYVLAEDIPPS-GKNASTFVARYAANGRLEGIYELPLE-NTPVTRRFVTVSGDGDVYFLR 238 YVLAE +P + V R+ NG + +Y+LP+E T RRFV + GDV FLR Sbjct: 238 PYVLAELVPADRPERTGMLVVRFTPNGMTDRVYDLPIEAGTVFARRFVAIGPRGDVLFLR 297 Query: 239 TKPDGVEVVGV-GFRPLGKVSVID-VRPXAAARPDIKFNATAAVRPSNRQQAIETAFAFE 296 + +V+ + G P K++V +P A RP A+ P +R IE A FE Sbjct: 298 SGESRAQVLKLEGRAPGRKLAVAKPAKPAIAVRPGKL--PKVAILPKSRGDVIERAIGFE 355 Query: 297 GIQWKLTPXS 306 + W +TP + Sbjct: 356 TLNWLVTPAA 365 >ref|YP_771629.1| hypothetical protein pRL110595 [Rhizobium leguminosarum bv. viciae 3841] emb|CAK03548.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 541 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 149/309 (48%), Gaps = 16/309 (5%) Query: 1 VLDQINGRILQFDPKQPNTAPDILKMPGDVQPTDLVVHNDDIMVWDGGVRMLKAAPGQST 60 +LDQ NGR+L D ++ P+IL +P + P DL V ++++ +W GV P + + Sbjct: 71 ILDQNNGRVLAVDAERSQAEPEILPLPENATPEDLAVVHNELYLWSDGV-----VPLERS 125 Query: 61 RGLGGDVIQLEEVSSRGTDDQVAISAFAQMGSQALSSPTDLLDQDTRAAIVRTTRQPDRQ 120 G L V D S FA MGS + ++D+ R+ R P Q Sbjct: 126 TDADGRSQTLRAVDGGADADDYTRSVFASMGSVSPGPLNSIIDEIGRSTSRPEARPPVIQ 185 Query: 121 YIASRSKGSVIADIIPDKGNAGVRVEIQTMVSNETIGQLGLRVRNQLGTVEFLEIDNSDR 180 Y+ SR G ++A+ + N + ++ S E L L ++GTVE L+ID + R Sbjct: 186 YVPSRGLGDIVAE-VSAAANDKAEILLRRSSSEENFLSLQLASEGRIGTVELLDIDTTGR 244 Query: 181 FYVLAEDIPPSG-KNASTFVARYAANGRLEGIYELPLE-NTPVTRRFVTVSGDGDVYFLR 238 Y L E +P + V R+ NG ++ +Y+LP+E T +RRFV + GDV +LR Sbjct: 245 PYALVELVPADRPERTGMLVVRFTPNGAMDRVYDLPIEPGTVFSRRFVAIGPRGDVLYLR 304 Query: 239 TKPDGVEVVGV-GFRPLGKVSVIDVRPX---AAARPDIKFNATAAVRPSNRQQAIETAFA 294 ++ +V+ + G P K++VI RP A +P A+ P +R IE A Sbjct: 305 SQESRAQVLRLDGREPGRKLAVI--RPTKQPTAGKPGK--TPKVAIVPKSRSDVIERAIG 360 Query: 295 FEGIQWKLT 303 FE + W +T Sbjct: 361 FETLNWMVT 369 >ref|YP_002985173.1| hypothetical protein Rleg_7206 [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60211.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 536 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 147/311 (47%), Gaps = 14/311 (4%) Query: 1 VLDQINGRILQFDPKQPNTAPDILKMPGDVQPTDLVVHNDDIMVWDGGVRMLKAAPGQST 60 +LDQ NGR+L D ++ P +L +P + DL V ++++ +W GV P + + Sbjct: 66 ILDQNNGRVLAVDAERSQAEPAVLPLPENATAEDLAVVHNELYLWSDGV-----VPLERS 120 Query: 61 RGLGGDVIQLEEVSSRGTDDQVAISAFAQMGSQALSSPTDLLDQDTRAAIVRTTRQPDRQ 120 G L V D S FA MGS + ++D+ R+ R P Q Sbjct: 121 TDADGRSQTLRAVDGGADADDYTRSVFASMGSVSPGPLNSIIDEIGRSTSRPEARPPVIQ 180 Query: 121 YIASRSKGSVIADIIPDKGNAGVRVEIQTMVSNETIGQLGLRVRNQLGTVEFLEIDNSDR 180 Y+ SR G ++A+ + N + ++ S E L L ++GTVE L+ID + R Sbjct: 181 YVPSRGLGDIVAE-VSAAANDKAEILLRRSSSEENFLSLQLASEGRIGTVELLDIDTTGR 239 Query: 181 FYVLAEDIPPSG-KNASTFVARYAANGRLEGIYELPLE-NTPVTRRFVTVSGDGDVYFLR 238 Y L E +P + V R+ NG ++ +Y+LP+E T +RRFV + GDV +LR Sbjct: 240 PYALVELVPADRPERTGMLVVRFTPNGAMDRVYDLPIEPGTVFSRRFVAIGPRGDVLYLR 299 Query: 239 TKPDGVEVVGVGFRPLGKVSVIDVRPX---AAARPDIKFNATAAVRPSNRQQAIETAFAF 295 ++ +V+ + R G+ + RP AA +P A+ P +R IE A F Sbjct: 300 SQESRAQVLRLDGREPGRKLAV-ARPTKQPAAGKPGK--TPKVAIVPKSRSDVIERAIGF 356 Query: 296 EGIQWKLTPXS 306 E + W +TP + Sbjct: 357 ETMNWLVTPTA 367