BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0042.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABY59060.1| putative LysR family transcriptional regulator [M... 233 2e-59 ref|YP_003447534.1| lysR-like transcriptional regulator [Azospir... 205 6e-51 ref|YP_781787.1| LysR family transcriptional regulator [Rhodopse... 203 3e-50 ref|ZP_03521857.1| probable transcriptional regulator protein, L... 197 2e-48 emb|CAM74589.1| transcriptional regulator, LysR family [Magnetos... 197 2e-48 >gb|ABY59060.1| putative LysR family transcriptional regulator [Mesorhizobium sp. F28] Length = 361 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 136/276 (49%), Positives = 180/276 (65%), Gaps = 1/276 (0%) Query: 1 MLDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTD 60 M + +LLR FV VA+CGGF RAAE+L+ TQST+S QIKRLE + R RTTRS++LT+ Sbjct: 57 MFEPDLLRTFVMVAECGGFSRAAERLNSTQSTVSHQIKRLESQAARTFLNRTTRSLSLTE 116 Query: 61 EGEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVK 120 +GE+L+ AR+ L+L + A+Q +PRL G VRL ++ A SLP LGRF +H V+ Sbjct: 117 DGEVLIDYARKFLRLADDAKQHFNSPRLKGHVRLAASDDFATYSLPEILGRFKRVHPEVR 176 Query: 121 LEVQIGVSAELIEQLDAGRLDLVFAKRPLGTSKGRLVWREPLVWTAADTFDLVPGAPLPL 180 L V +G+S L+ +LD G DLV KR LG + G LV RE LVW AA + P PLPL Sbjct: 177 LTVDVGLSGNLVSRLDEGEFDLVLGKRSLGETDGELVSREKLVWVAAPDIVINPHQPLPL 236 Query: 181 ALYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLRI 240 A+Y + + R A+ L W +VYTSPSL+G+RAAA+AG+AVTPL + VT L Sbjct: 237 AVYPKPCLYRSTAIEVLNAAGRSWNVVYTSPSLSGIRAAAIAGIAVTPLAANFVTPDLMC 296 Query: 241 LGIGDGLPPLPDLEFAIYEKRRPDK-AAEALADALL 275 L + LP LPD+EFA++ R + AA LA+ LL Sbjct: 297 LDPDEDLPELPDVEFALFRTRSVETPAARELAELLL 332 >ref|YP_003447534.1| lysR-like transcriptional regulator [Azospirillum sp. B510] dbj|BAI70990.1| lysR-like transcriptional regulator [Azospirillum sp. B510] Length = 297 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 170/288 (59%), Gaps = 3/288 (1%) Query: 2 LDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTDE 61 L+++ LRAFV VA+ GGF AA++L TQS IS +IK+LE R +F RT+RS+ALT + Sbjct: 6 LEIDALRAFVTVAEAGGFTAAADRLGRTQSAISVKIKKLEETLGRRVFERTSRSLALTHD 65 Query: 62 GEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVKL 121 GE+L+G ARRLL L + +R P G +RLGV + LP L RFA LH + + Sbjct: 66 GELLMGYARRLLDLNDETVRRFAEPAAEGELRLGVADYFLADHLPHVLRRFAKLHPRLHI 125 Query: 122 EVQIGVSAELIEQLDAGRLDLVFAKRPLGTSKGRLVWREPLVWTAADTFDLVPGAPLPLA 181 +V++G+ EL+ LD G LDL ++R G +GR W EPL W AA ++ +PLP Sbjct: 126 DVRVGLCGELVSALDGGELDLAISRRDTGDGRGRGFWSEPLRWVAAPGLEIPADSPLPFC 185 Query: 182 LYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLRIL 241 V R+ L+AL + W +VYTS S+ GV+AA AGL V L S++ G+R L Sbjct: 186 ALPAPCVFRNRGLAALGEAGRSWRVVYTSGSVLGVQAAVRAGLGVAVLSESSIPDGMRRL 245 Query: 242 GIGDGLPPLPDLEFAIY-EKRRPDKAAEALADALLTLARG--PLRPTI 286 G DGLP L D++ AI+ E R AEAL LL G P RP + Sbjct: 246 GPEDGLPELGDVDMAIFGETPRNRHLAEALVGFLLDGLSGLRPARPPL 293 >ref|YP_781787.1| LysR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ06807.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisA53] Length = 287 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/273 (45%), Positives = 162/273 (59%), Gaps = 1/273 (0%) Query: 2 LDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTDE 61 LDLEL+R F+AV D GGF RA +LH TQSTIS I+RLE RPLF R R LT++ Sbjct: 3 LDLELVRTFLAVIDHGGFTRAGGRLHKTQSTISLHIRRLEEIVGRPLFDRQGRHAVLTEQ 62 Query: 62 GEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVKL 121 GE+L A L+ L + A +L P ++G VRLG+ E+ A LP AL RF A H ++L Sbjct: 63 GEILRTYAEALVGLNDEALLKLRRPPVTGIVRLGLPEDFATRHLPLALRRFTATHPAIRL 122 Query: 122 EVQIGVSAELIEQLDAGRLDLVFAKRPLGTSKGRLVWREPLVWTAADTFDLVPGAPLPLA 181 EV+ ++AEL+ L G LD V A+R L ++G+L+WREPL+W A L PLPL Sbjct: 123 EVRSSLTAELMRDLGNGDLDFVLARRELDATEGQLLWREPLIWVGARG-RLFSADPLPLV 181 Query: 182 LYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLRIL 241 ++ V R L +R WEIVYTS SL GV+AA AGL VT L S V +L Sbjct: 182 MFPHGCVYRPEVLRRMRSCPRAWEIVYTSSSLAGVQAAVSAGLGVTALAESTVLPDFAVL 241 Query: 242 GIGDGLPPLPDLEFAIYEKRRPDKAAEALADAL 274 G +GLP LP + A++ ++AA L + L Sbjct: 242 GAREGLPELPQTDIALFTGVGRNEAAAYLGEYL 274 >ref|ZP_03521857.1| probable transcriptional regulator protein, LysR family [Rhizobium etli GR56] Length = 284 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/281 (45%), Positives = 163/281 (58%), Gaps = 2/281 (0%) Query: 1 MLDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTD 60 MLDL LR+FVAV G F AAE+L L QST+SQ I+RLE R L R T V LT Sbjct: 1 MLDLSQLRSFVAVEQMGSFTLAAERLGLGQSTVSQHIQRLEATLGRKLLARDTHKVMLTG 60 Query: 61 EGEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVK 120 +GE LL AR +L +E R + L G++RLGV E+ LP+AL F H V Sbjct: 61 DGEALLTHARAMLSIEGQVRSLFKSNSLRGSLRLGVSEDFVTSQLPAALEDFVRSHPSVD 120 Query: 121 LEVQIGVSAELIEQLDAGRLDLVFAKRPLGTSKGRLVWREPLVWTAADTFDLVPGAPLPL 180 LE+ + +S L E D G +DLV AKR LG ++G+LV+REPLVW A D LV PLPL Sbjct: 121 LELTVALSGVLYEMQDNGDIDLVLAKRRLGDARGKLVYREPLVWLARDPERLVAAGPLPL 180 Query: 181 ALYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLRI 240 + SV+R AL AL + W IV T SL+G+ AAA AG+ V P S +GL+ Sbjct: 181 IAFPPPSVTRAIALEALGRNGVPWRIVCTCGSLSGLTAAARAGMGVLVQPRSMAPSGLKE 240 Query: 241 LGIGDGLPPLPDLEFAIYEKRRPDKA-AEALADALLTLARG 280 + G LP L D+EF + ++ D+A AL+D +L RG Sbjct: 241 IAAGR-LPALEDVEFVLVPRKGADQALVAALSDDILQKVRG 280 >emb|CAM74589.1| transcriptional regulator, LysR family [Magnetospirillum gryphiswaldense MSR-1] Length = 291 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/276 (45%), Positives = 159/276 (57%), Gaps = 2/276 (0%) Query: 2 LDLELLRAFVAVADCGGFHRAAEQLHLTQSTISQQIKRLELETRRPLFRRTTRSVALTDE 61 DL+LLR FV V + GGF RAA +L LTQST+S I+RLE + +F R R +AL+ Sbjct: 8 FDLDLLRTFVTVVEAGGFTRAAARLDLTQSTVSIHIRRLEDGLGQRVFVRDRRQLALSAT 67 Query: 62 GEMLLGDARRLLQLEEAARQRLVAPRLSGAVRLGVVEEVAGGSLPSALGRFAALHRGVKL 121 GE+LL AR++L L +AAR RL+ P + G VRLG E+ A LP L RFA +H V L Sbjct: 68 GEILLPMARQMLDLADAARIRLLEPDIGGTVRLGTPEDFATLHLPDVLSRFARVHPQVAL 127 Query: 122 EVQIGVSAELIEQLDAGRLDLVFAKR-PLGTSKGRLVWREPLVWTAADTFDLVPGAPLPL 180 EV +A L++ G+ DLV KR P G S G VWREPLVW + L +PL Sbjct: 128 EVNCDFTANLLDGFAKGQYDLVLCKREPQGPSGGINVWREPLVWVGPERLRLDDDQSIPL 187 Query: 181 ALYRERSVSRDAALSALRDGELGWEIVYTSPSLTGVRAAAVAGLAVTPLPLSAVTTGLRI 240 L + R AL+AL W +VYTSPSL GV+AA AGL T L V GL + Sbjct: 188 VLAPSPDIYRRRALAALEQSGRRWRVVYTSPSLAGVQAAVRAGLGFTVLAKETVVPGLVM 247 Query: 241 LGIGDGLPPLPDLEFAIYEKR-RPDKAAEALADALL 275 +G GLP L D E A+Y P KAA LA+ ++ Sbjct: 248 VGPERGLPELADTEIALYRAPGTPSKAAALLAEHIV 283