BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0040.p (440 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_317218.1| flagellar MS-ring protein [Nitrobacter winograd... 717 0.0 ref|YP_576038.1| flagellar MS-ring protein [Nitrobacter hamburge... 711 0.0 ref|ZP_01044545.1| flagellar M-ring protein [Nitrobacter sp. Nb-... 709 0.0 ref|NP_773639.2| flagellar MS-ring protein [Bradyrhizobium japon... 695 0.0 dbj|BAC52264.1| fliF [Bradyrhizobium japonicum USDA 110] 674 0.0 >ref|YP_317218.1| flagellar MS-ring protein [Nitrobacter winogradskyi Nb-255] gb|ABA03866.1| flagellar FliF M-ring protein [Nitrobacter winogradskyi Nb-255] Length = 541 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/404 (87%), Positives = 378/404 (93%) Query: 2 VQSLVAFLRGLGAARLAAMVAVTAALIGFFAFVIMRVTTPQMTTLFTDLSTEDSSAIIKE 61 +Q L+AFL+GLGA+RL AMVAVTA LIGFFAFVIMRVTTPQMTTLFTDLS EDSS IIK+ Sbjct: 1 MQGLLAFLKGLGASRLMAMVAVTAVLIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 62 LERQAIPFELRNDGAAIMVPKDKVTRLRMKLAEGGMPKGGGVGYEIFDKSDALGTTSFVQ 121 LERQAIPFELRNDGA IMVPKDKVTRLRMKLAE G+PKGGGVGYEIFDKSDALGTTSFVQ Sbjct: 61 LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGGVGYEIFDKSDALGTTSFVQ 120 Query: 122 NINHLRALEGELARTIRAIDRVQAARVHLVLPEKPLFSRETPEPSASIVLRVRGALEPQQ 181 NIN LRALEGELARTIRAIDRVQ ARVHLVLPE+PLF+RE P+PSASIVLRVRG LEPQQ Sbjct: 121 NINRLRALEGELARTIRAIDRVQDARVHLVLPERPLFTREAPQPSASIVLRVRGGLEPQQ 180 Query: 182 IRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAQSDADAAVGDERRAAFEKRMRKQVED 241 IRAIRH+VASAVNGLKPQRVSIVDE GQLLADG+ +DAD GDERRAAFEKRMR QVE Sbjct: 181 IRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGVSGDERRAAFEKRMRSQVEA 240 Query: 242 IVSSVVGAGRARVQLSADFDYNKITQTSDKFDPEGRVLRSTQTREESSLTADNSGQVTVA 301 IVSSVVG GRARVQLSADFDYNKITQTSDKFDPEGRVLRS+QTREESSLTADN+GQVTV Sbjct: 241 IVSSVVGNGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREESSLTADNNGQVTVN 300 Query: 302 NELPGSQNQDNAARARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGSYSKN 361 NELPG+Q DN ARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDG+Y++N Sbjct: 301 NELPGNQPSDNPNTARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGAYARN 360 Query: 362 EKGELVYQDRTKEQLDRIAALVRSAIGFDQKRGDQVEVVNLRFA 405 +KG++VY++R++EQLDRIA LVRSAIGFDQKRGDQVEVVNL+FA Sbjct: 361 DKGQMVYEERSQEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFA 404 >ref|YP_576038.1| flagellar MS-ring protein [Nitrobacter hamburgensis X14] gb|ABE61578.1| flagellar M-ring protein FliF [Nitrobacter hamburgensis X14] Length = 540 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/404 (85%), Positives = 376/404 (93%) Query: 2 VQSLVAFLRGLGAARLAAMVAVTAALIGFFAFVIMRVTTPQMTTLFTDLSTEDSSAIIKE 61 +Q L+AFL+GLG +RL AMVAVT ALIGFFAFVIMRVT PQMTTLFTDLS EDSS IIK+ Sbjct: 1 MQGLLAFLKGLGPSRLMAMVAVTTALIGFFAFVIMRVTAPQMTTLFTDLSVEDSSGIIKD 60 Query: 62 LERQAIPFELRNDGAAIMVPKDKVTRLRMKLAEGGMPKGGGVGYEIFDKSDALGTTSFVQ 121 LERQAIP+ELRNDGA IMVPKDKVTRLRMKLAE G+PKGGGVGYEIFDKSDALGTTSFVQ Sbjct: 61 LERQAIPYELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGGVGYEIFDKSDALGTTSFVQ 120 Query: 122 NINHLRALEGELARTIRAIDRVQAARVHLVLPEKPLFSRETPEPSASIVLRVRGALEPQQ 181 NIN LRALEGEL+RTI+AIDR+Q ARVHLVLP++PLFSRE P+PSASIVLRVRG LEPQQ Sbjct: 121 NINRLRALEGELSRTIKAIDRIQDARVHLVLPDRPLFSREAPQPSASIVLRVRGGLEPQQ 180 Query: 182 IRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAQSDADAAVGDERRAAFEKRMRKQVED 241 IRAIRH+VASAVNGLKPQRVSIVDE GQLLADG+ +DAD GDERR AFEKRMR QVE Sbjct: 181 IRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGTTGDERRTAFEKRMRNQVEA 240 Query: 242 IVSSVVGAGRARVQLSADFDYNKITQTSDKFDPEGRVLRSTQTREESSLTADNSGQVTVA 301 IVSSVVG+GRARVQLSADFDYNKITQTSDKFDPEGRVLRS+QTREESS+TADN+GQVTV Sbjct: 241 IVSSVVGSGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREESSVTADNNGQVTVN 300 Query: 302 NELPGSQNQDNAARARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGSYSKN 361 NELPG+Q DN + ARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDG+Y+KN Sbjct: 301 NELPGNQQSDNPSPARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGTYTKN 360 Query: 362 EKGELVYQDRTKEQLDRIAALVRSAIGFDQKRGDQVEVVNLRFA 405 ++G++VY +R+KEQLDRIA LVRSAIGFDQKRGDQVEVVNL+FA Sbjct: 361 DQGQMVYAERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFA 404 >ref|ZP_01044545.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A] gb|EAQ37326.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A] Length = 541 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/404 (85%), Positives = 374/404 (92%) Query: 2 VQSLVAFLRGLGAARLAAMVAVTAALIGFFAFVIMRVTTPQMTTLFTDLSTEDSSAIIKE 61 +Q L+AFL+GLGA+RL AMVAVT LI FFAFVIMRVTTPQMTTLFTDLS EDSS IIK+ Sbjct: 1 MQGLLAFLKGLGASRLMAMVAVTTVLIAFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 62 LERQAIPFELRNDGAAIMVPKDKVTRLRMKLAEGGMPKGGGVGYEIFDKSDALGTTSFVQ 121 LERQAIPFELRNDGA IMVPKDKVTRLRMKLAE G+PKGGGVGYEIFDKSDALGTTSFVQ Sbjct: 61 LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGGVGYEIFDKSDALGTTSFVQ 120 Query: 122 NINHLRALEGELARTIRAIDRVQAARVHLVLPEKPLFSRETPEPSASIVLRVRGALEPQQ 181 NIN LRALEGELARTIRAIDR+Q ARVHLVLPE+PLF+RE P+PSASIV+RVRG LEPQQ Sbjct: 121 NINRLRALEGELARTIRAIDRIQDARVHLVLPERPLFTREAPQPSASIVVRVRGGLEPQQ 180 Query: 182 IRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAQSDADAAVGDERRAAFEKRMRKQVED 241 IRAIRH+VASAVNGLKPQRVSIVDE GQLLADG+ +DAD GDERR AFEKRMR QVE Sbjct: 181 IRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSTTDADGVTGDERRTAFEKRMRSQVEA 240 Query: 242 IVSSVVGAGRARVQLSADFDYNKITQTSDKFDPEGRVLRSTQTREESSLTADNSGQVTVA 301 IVSSVVG GRARVQLSADFDYNKITQTSD FDPEGRVLRS+QTREESSLTADN+GQVTV Sbjct: 241 IVSSVVGNGRARVQLSADFDYNKITQTSDTFDPEGRVLRSSQTREESSLTADNNGQVTVN 300 Query: 302 NELPGSQNQDNAARARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGSYSKN 361 NELPG+Q DN +ARDQSKKSEETNNYEISRTTKTEV+EAGRVNRISVAVLVDG+Y+K+ Sbjct: 301 NELPGNQPSDNPNQARDQSKKSEETNNYEISRTTKTEVSEAGRVNRISVAVLVDGTYAKD 360 Query: 362 EKGELVYQDRTKEQLDRIAALVRSAIGFDQKRGDQVEVVNLRFA 405 +KG++VY +R+KEQLDRIA LVRSAIGFDQKRGDQVEVVNLRFA Sbjct: 361 DKGQMVYTERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFA 404 >ref|NP_773639.2| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110] Length = 537 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/404 (87%), Positives = 380/404 (94%), Gaps = 1/404 (0%) Query: 2 VQSLVAFLRGLGAARLAAMVAVTAALIGFFAFVIMRVTTPQMTTLFTDLSTEDSSAIIKE 61 +Q L FL+G+GAAR AM+AVTAAL+GFFAFVIMRVTTPQMTTLFTDLS EDSS+IIK+ Sbjct: 1 MQGLADFLKGIGAARFGAMIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSIIKD 60 Query: 62 LERQAIPFELRNDGAAIMVPKDKVTRLRMKLAEGGMPKGGGVGYEIFDKSDALGTTSFVQ 121 LERQAI FELRN+G IMVPKDKVTRLRMKLAEGG+PKGGGVGYE+FDKSDALGTTSFVQ Sbjct: 61 LERQAIQFELRNEGTIIMVPKDKVTRLRMKLAEGGLPKGGGVGYEVFDKSDALGTTSFVQ 120 Query: 122 NINHLRALEGELARTIRAIDRVQAARVHLVLPEKPLFSRETPEPSASIVLRVRGALEPQQ 181 NINHLRALEGELARTIRAIDR+QAARVHLVLPE+PLFSRE PEPSASIV+RVRGALE QQ Sbjct: 121 NINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQQ 180 Query: 182 IRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAQSDADAAVGDERRAAFEKRMRKQVED 241 IRAIRH+VASAVNGLKPQRVSIVDEAGQLLADGA +D + A+GDERR FEKRMRKQVED Sbjct: 181 IRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRKQVED 240 Query: 242 IVSSVVGAGRARVQLSADFDYNKITQTSDKFDPEGRVLRSTQTREESSLTADNSGQVTVA 301 IVSSVVG+GRARVQLSADFD+NKITQTSDKFDPEGRVLRSTQTREESS+TADN+GQVTV Sbjct: 241 IVSSVVGSGRARVQLSADFDFNKITQTSDKFDPEGRVLRSTQTREESSMTADNNGQVTVN 300 Query: 302 NELPGSQNQDNAARARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGSYSKN 361 NELPG+Q Q+N A+DQSKK+EETNNYEISRTTKTEVTEAGRVNRISVAVLVDG YSKN Sbjct: 301 NELPGNQ-QNNGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGIYSKN 359 Query: 362 EKGELVYQDRTKEQLDRIAALVRSAIGFDQKRGDQVEVVNLRFA 405 +KGEL YQDRTKEQLDRIA LVRSAIGFDQKRGDQVEVVNLRFA Sbjct: 360 DKGELAYQDRTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFA 403 >dbj|BAC52264.1| fliF [Bradyrhizobium japonicum USDA 110] Length = 519 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/386 (89%), Positives = 367/386 (95%), Gaps = 1/386 (0%) Query: 20 MVAVTAALIGFFAFVIMRVTTPQMTTLFTDLSTEDSSAIIKELERQAIPFELRNDGAAIM 79 M+AVTAAL+GFFAFVIMRVTTPQMTTLFTDLS EDSS+IIK+LERQAI FELRN+G IM Sbjct: 1 MIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSIIKDLERQAIQFELRNEGTIIM 60 Query: 80 VPKDKVTRLRMKLAEGGMPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELARTIRA 139 VPKDKVTRLRMKLAEGG+PKGGGVGYE+FDKSDALGTTSFVQNINHLRALEGELARTIRA Sbjct: 61 VPKDKVTRLRMKLAEGGLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELARTIRA 120 Query: 140 IDRVQAARVHLVLPEKPLFSRETPEPSASIVLRVRGALEPQQIRAIRHVVASAVNGLKPQ 199 IDR+QAARVHLVLPE+PLFSRE PEPSASIV+RVRGALE QQIRAIRH+VASAVNGLKPQ Sbjct: 121 IDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQQIRAIRHLVASAVNGLKPQ 180 Query: 200 RVSIVDEAGQLLADGAQSDADAAVGDERRAAFEKRMRKQVEDIVSSVVGAGRARVQLSAD 259 RVSIVDEAGQLLADGA +D + A+GDERR FEKRMRKQVEDIVSSVVG+GRARVQLSAD Sbjct: 181 RVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRKQVEDIVSSVVGSGRARVQLSAD 240 Query: 260 FDYNKITQTSDKFDPEGRVLRSTQTREESSLTADNSGQVTVANELPGSQNQDNAARARDQ 319 FD+NKITQTSDKFDPEGRVLRSTQTREESS+TADN+GQVTV NELPG+Q Q+N A+DQ Sbjct: 241 FDFNKITQTSDKFDPEGRVLRSTQTREESSMTADNNGQVTVNNELPGNQ-QNNGVAAKDQ 299 Query: 320 SKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGSYSKNEKGELVYQDRTKEQLDRI 379 SKK+EETNNYEISRTTKTEVTEAGRVNRISVAVLVDG YSKN+KGEL YQDRTKEQLDRI Sbjct: 300 SKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGIYSKNDKGELAYQDRTKEQLDRI 359 Query: 380 AALVRSAIGFDQKRGDQVEVVNLRFA 405 A LVRSAIGFDQKRGDQVEVVNLRFA Sbjct: 360 ATLVRSAIGFDQKRGDQVEVVNLRFA 385