BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0035.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002278624.1| AraC family transcriptional regulator [Rhizo... 213 3e-53 ref|YP_002974060.1| AraC family transcriptional regulator [Rhizo... 208 1e-51 ref|NP_436979.1| transcriptional regulator transcription regulat... 207 1e-51 ref|YP_002823988.1| transcriptional regulator [Sinorhizobium fre... 207 2e-51 ref|YP_001312420.1| helix-turn-helix domain-containing protein [... 207 2e-51 >ref|YP_002278624.1| AraC family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI57884.1| transcriptional regulator, AraC family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 380 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/342 (39%), Positives = 184/342 (53%), Gaps = 11/342 (3%) Query: 8 PAHAAQLLEHVPLPREPRNIR----DITPA-PPRLFSTRYYPPSEQFEVWKTRMASLVDV 62 PAH LE PREP + D+TPA P FSTR PP EQF W++ MA LVDV Sbjct: 16 PAH----LERRRWPREPSPQKEHRVDVTPALVPLRFSTRDLPPKEQFRSWRSHMAPLVDV 71 Query: 63 APPEGHGPAHGFLVEYLTCNMADVVFTSGRFAAQSFARVVKPSHGTPVDIWWLYRVRSGE 122 P G GFL E ++ D++ R A S+ R +P+D W + +RSG Sbjct: 72 HLPNGQAEEGGFLAEQTGWHLGDILIIQQRVQACSYIRDQAMLRSSPIDHWNVGVLRSGR 131 Query: 123 ARFETAERRIHAGPGAMFLISLDQDFRGSITDYDGLVLGLPRQSFADVADQLDGVCNILL 182 A E GPG +F SL +RG +TD +++ LP + A L NI L Sbjct: 132 AWTEANRHVTETGPGEIFFRSLGHPYRGRMTDSASVLVFLPYELLTRDAPLLQNAHNIAL 191 Query: 183 EGNLIELLADYLDRLETRITLMSSEELRQAGRATAQMIAACIQLSSDRLEQARGAIESVL 242 G+L ELL Y+D LE + ++ EE + R M+ AC SS L++++ L Sbjct: 192 SGSLAELLVSYIDSLEANLGNLTVEEAPRIIRTIGDMVVACAA-SSASLDRSQEQTNMGL 250 Query: 243 FERARLYIESHLADFDLTPDRIAQQLRISRSALYRAFESVGGVAGYILRKRLRAAHAELV 302 ERA YI +L LTPD + + L ISR+ LY+ FE+ GGV YI ++RL A+A+L Sbjct: 251 MERAHRYIHLNLHSDSLTPDVMCRALGISRTRLYQLFETSGGVFNYIRKRRLLQAYADLT 310 Query: 303 SST-GRQVQEIAYRHGFKLASDFTRAFRREFGVSPREMRERM 343 + T R + EIA GF +A++FTRAF EFG+SPRE+R+ M Sbjct: 311 NPTDNRPISEIAVAAGFDVAANFTRAFSHEFGLSPREVRKTM 352 >ref|YP_002974060.1| AraC family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS54521.1| transcriptional regulator, AraC family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 382 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 188/346 (54%), Gaps = 11/346 (3%) Query: 4 DDKTPAHAAQLLEHVPLPREPRNIRDITP-APPRL----FSTRYYPPSEQFEVWKTRMAS 58 + + PAH +E PREP ++ P A P L FST+ PP+EQF+ W+ MA Sbjct: 14 EQERPAH----MERRRWPREPAMRKERPPHASPALVPLRFSTQDLPPAEQFQAWRAHMAP 69 Query: 59 LVDVAPPEGHGPAHGFLVEYLTCNMADVVFTSGRFAAQSFARVVKPSHGTPVDIWWLYRV 118 LVDV PEG P GFL E + ++ D++ R A + R +P+D W + Sbjct: 70 LVDVHLPEGKSPEDGFLAEQIGWHLGDILIVQQRAHAHRYVRDQAMLRSSPIDHWNVGLQ 129 Query: 119 RSGEARFETAERRIHAGPGAMFLISLDQDFRGSITDYDGLVLGLPRQSFADVADQLDGVC 178 RSG+A E R G G +F +SL +RG TD + L++ LP + A A L Sbjct: 130 RSGQAWTEVNRRVTETGAGEIFFMSLGSPYRGRTTDTEALLVFLPYEMLARDASLLQSAG 189 Query: 179 NILLEGNLIELLADYLDRLETRITLMSSEELRQAGRATAQMIAACIQLSSDRLEQARGAI 238 N +L G+ ELL YL LET + ++ EE+ + + M+ A SS R + + Sbjct: 190 NTVLSGSHAELLTGYLTGLETNLGNLTIEEVPRIIQTIGDMVVAGAA-SSTRTDTGQNQA 248 Query: 239 ESVLFERARLYIESHLADFDLTPDRIAQQLRISRSALYRAFESVGGVAGYILRKRLRAAH 298 L ERA YI +L +LTPD + + L ISR+ LY+ FE+ GGV YI ++RL A+ Sbjct: 249 NMGLMERAHRYIHVNLHSENLTPDVMCRALGISRTRLYQLFEASGGVLNYIRKRRLLQAY 308 Query: 299 AELVSSTG-RQVQEIAYRHGFKLASDFTRAFRREFGVSPREMRERM 343 A+L +S R + EIA GF++A++FTRAF EFG+SPRE+R M Sbjct: 309 ADLSNSADHRPISEIAEAAGFEVAANFTRAFIHEFGLSPREIRRTM 354 >ref|NP_436979.1| transcriptional regulator transcription regulator protein [Sinorhizobium meliloti 1021] emb|CAC48839.1| putative transcriptional regulator TRANSCRIPTION REGULATOR protein [Sinorhizobium meliloti 1021] gb|AEG08506.1| transcriptional regulator, AraC family [Sinorhizobium meliloti BL225C] Length = 382 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/340 (38%), Positives = 185/340 (54%), Gaps = 12/340 (3%) Query: 8 PAHAAQLLEHVPLPREPRNIRDI----TPA-PPRLFSTRYYPPSEQFEVWKTRMASLVDV 62 PAH +E PR+P +D +PA P FSTR PP EQF W+ MA LVDV Sbjct: 18 PAH----MERRRWPRDPTARKDRLAERSPALVPSRFSTRDLPPQEQFRSWRAHMAPLVDV 73 Query: 63 APPEGHGPAHGFLVEYLTCNMADVVFTSGRFAAQSFARVVKPSHGTPVDIWWLYRVRSGE 122 P+G GF E ++ D++ A S+ R +P+D W + RSG Sbjct: 74 RLPDGVSEEDGFPAELTGWHLGDLLIVQQVTPAHSYERSQTMLRSSPIDHWNVGLFRSGR 133 Query: 123 ARFETAERRIHAGPGAMFLISLDQDFRGSITDYDGLVLGLPRQSFADVADQLDGVCNILL 182 + E R GPG F SL +RG +TD ++L +P + AD A +L+G N +L Sbjct: 134 SWTEADRRVTETGPGEFFFRSLGYPYRGRMTDAASILLFMPYELLADDAGKLEGANNSVL 193 Query: 183 EGNLIELLADYLDRLETRITLMSSEELRQAGRATAQMIAACIQLSSDRLEQARGAIESVL 242 GNL +LLA+Y++ +E + ++ EE+ + R M+ AC+ ++ R + + + Sbjct: 194 SGNLADLLANYINGMEENLGNITVEEVPRIVRTIRDMVVACV--AAVRPDAGGSQAKMGV 251 Query: 243 FERARLYIESHLADFDLTPDRIAQQLRISRSALYRAFESVGGVAGYILRKRLRAAHAELV 302 ERA YI +L DLTP+ I ++L ISR+ LY+ FE GGV YI R+RL A+AEL Sbjct: 252 MERAHRYIHLNLNSGDLTPETICRELGISRTRLYQLFEPSGGVLNYIRRRRLLQAYAELS 311 Query: 303 SST-GRQVQEIAYRHGFKLASDFTRAFRREFGVSPREMRE 341 T R + EIA GF LA++FTRAF EFG SPRE+R+ Sbjct: 312 DPTNNRPIGEIAEAAGFDLAANFTRAFSHEFGASPREIRK 351 >ref|YP_002823988.1| transcriptional regulator [Sinorhizobium fredii NGR234] gb|AAQ87085.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234] gb|ACP23235.1| transcriptional regulator [Sinorhizobium fredii NGR234] Length = 385 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/326 (38%), Positives = 179/326 (54%), Gaps = 6/326 (1%) Query: 21 PREPRNIRDITPAPPRL----FSTRYYPPSEQFEVWKTRMASLVDVAPPEGHGPAHGFLV 76 PRE + APP L FSTR P+EQF+ W+T MA L +V P+ P GF+ Sbjct: 30 PREAAGHAPRSVAPPALVPVRFSTRELHPAEQFQAWRTHMAPLAEVRLPDNLPPEEGFVA 89 Query: 77 EYLTCNMADVVFTSGRFAAQSFARVVKPSHGTPVDIWWLYRVRSGEARFETAERRIHAGP 136 E + +++ R A S+ R +P+D W + + SG E R P Sbjct: 90 EQTAWHCGNLLIVQQRVAGHSYLRPQTMLRASPIDHWCVELLHSGTTWTEADRRVTENAP 149 Query: 137 GAMFLISLDQDFRGSITDYDGLVLGLPRQSFADVADQLDGVCNILLEGNLIELLADYLDR 196 G + SL FRG T DG++L +P + FAD A L N++L GNL +LL +++ Sbjct: 150 GRLVFRSLGYPFRGRTTAADGVLLFMPYELFADDAAVLGEANNLVLSGNLADLLITFIEG 209 Query: 197 LETRITLMSSEELRQAGRATAQMIAACIQLSSDRLEQARGAIESVLFERARLYIESHLAD 256 +E R+ +++EE+ + M+ AC+ SS R + A + ERA +I +L Sbjct: 210 IEPRLDRLTAEEIPRIVHTVHDMVVACVA-SSARPDAAGAQTNKGMMERAHRHIHLNLHS 268 Query: 257 FDLTPDRIAQQLRISRSALYRAFESVGGVAGYILRKRLRAAHAELVS-STGRQVQEIAYR 315 +LTPD IA+ + ISR+ LY+ FE+ GGV YI R+RL+ AHA L S GR + EIA Sbjct: 269 AELTPDAIARAIGISRTRLYQLFEASGGVLNYIRRRRLQQAHAALSDPSDGRPIAEIAEA 328 Query: 316 HGFKLASDFTRAFRREFGVSPREMRE 341 GF +A++FTRAF EFGVSPRE+R+ Sbjct: 329 AGFDVAANFTRAFSHEFGVSPREIRK 354 >ref|YP_001312420.1| helix-turn-helix domain-containing protein [Sinorhizobium medicae WSM419] gb|ABR62487.1| helix-turn-helix- domain containing protein AraC type [Sinorhizobium medicae WSM419] Length = 382 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 185/340 (54%), Gaps = 12/340 (3%) Query: 8 PAHAAQLLEHVPLPREP--RNIRDITPAP---PRLFSTRYYPPSEQFEVWKTRMASLVDV 62 PAH +E PR+P R R +P P FSTR P EQF+ W+ MA LVDV Sbjct: 18 PAH----MERRRWPRDPSARKDRSAERSPALVPSRFSTRELPLEEQFKSWRAHMAPLVDV 73 Query: 63 APPEGHGPAHGFLVEYLTCNMADVVFTSGRFAAQSFARVVKPSHGTPVDIWWLYRVRSGE 122 P+G HGF E + ++ D++ A S+ R +P+D W + R+G Sbjct: 74 HLPDGVTEEHGFPAELVGWHLGDLLVVQQSTPAHSYERSQAMLRSSPIDHWNVGLFRAGR 133 Query: 123 ARFETAERRIHAGPGAMFLISLDQDFRGSITDYDGLVLGLPRQSFADVADQLDGVCNILL 182 + E R GPG F SL +RG +TD ++L +P + AD +L+G N +L Sbjct: 134 SWTEADRRVTETGPGEFFFRSLGYPYRGRMTDAAAILLFMPYELLADDVGKLEGANNSVL 193 Query: 183 EGNLIELLADYLDRLETRITLMSSEELRQAGRATAQMIAACIQLSSDRLEQARGAIESVL 242 G+L +LLA+YL+ +E + ++ EE+ + R M+ C+ ++ R + + + Sbjct: 194 TGSLADLLANYLNGMEENLGNITVEEVPRIVRTIRDMVVTCV--AAVRPDTGGSQAKMGV 251 Query: 243 FERARLYIESHLADFDLTPDRIAQQLRISRSALYRAFESVGGVAGYILRKRLRAAHAELV 302 ERA YI +L DLTP+ I ++L +SR+ LY+ FE GGV YI R+RL AHAEL Sbjct: 252 MERAHRYIHLNLHSADLTPESICRELGVSRTRLYQLFEPSGGVLNYIRRRRLLQAHAELS 311 Query: 303 SSTG-RQVQEIAYRHGFKLASDFTRAFRREFGVSPREMRE 341 T R + EIA GF LA++FTRAF EFGVSPRE+R+ Sbjct: 312 DPTNYRPIAEIAETAGFDLAANFTRAFSHEFGVSPREVRK 351