BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0025.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_576035.1| flagellar motor switch protein [Nitrobacter ham...   205   2e-51
ref|YP_317215.1| flagellar motor switch protein [Nitrobacter win...   204   4e-51
ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter s...   203   6e-51
ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomona...   201   3e-50
ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomona...   198   3e-49

>ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14]
 gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14]
          Length = 116

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/116 (87%), Positives = 110/116 (94%)

Query: 1   MSDTDTQVPLPDLNSAEAPGIDDIGYNEDEHAARIAADLEAVFDVPVQVSAVLGRSKMDV 60
           MSD DTQVPLPDLN+A+ P IDDIGY+EDE  +RIA+DLEAVFDVPVQVSAVLGRSKMDV
Sbjct: 1   MSDNDTQVPLPDLNAADTPAIDDIGYSEDEQVSRIASDLEAVFDVPVQVSAVLGRSKMDV 60

Query: 61  GDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS 116
           G LLKLGPG+VLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAE++
Sbjct: 61  GALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAEKA 116


>ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255]
 gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 116

 Score =  204 bits (519), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 111/116 (95%)

Query: 1   MSDTDTQVPLPDLNSAEAPGIDDIGYNEDEHAARIAADLEAVFDVPVQVSAVLGRSKMDV 60
           MSD DTQVPLPDLN+A+AP IDD+GY+EDE  +R+A+DLEAVFDVPVQVSAVLGRS+MDV
Sbjct: 1   MSDNDTQVPLPDLNAADAPSIDDVGYSEDEQVSRVASDLEAVFDVPVQVSAVLGRSRMDV 60

Query: 61  GDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS 116
           G LLKLGPG+VLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAE++
Sbjct: 61  GALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAEKA 116


>ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 116

 Score =  203 bits (517), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 111/116 (95%)

Query: 1   MSDTDTQVPLPDLNSAEAPGIDDIGYNEDEHAARIAADLEAVFDVPVQVSAVLGRSKMDV 60
           MSD DTQVPLPDLN+A+AP IDD+GY+EDE  +R+A+DLEAVFDVPVQVSAVLGRS+MDV
Sbjct: 1   MSDNDTQVPLPDLNAADAPTIDDVGYSEDEQVSRVASDLEAVFDVPVQVSAVLGRSRMDV 60

Query: 61  GDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS 116
           G LLKLGPG+VLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAE++
Sbjct: 61  GALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAEKA 116


>ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18]
 gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18]
          Length = 116

 Score =  201 bits (512), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 111/116 (95%)

Query: 1   MSDTDTQVPLPDLNSAEAPGIDDIGYNEDEHAARIAADLEAVFDVPVQVSAVLGRSKMDV 60
           M+D D+QVPLPDLNSA+AP + D+GY++DE  +RIAADLEAVFDVPVQVSAVLGRSKMDV
Sbjct: 1   MADNDSQVPLPDLNSADAPPLGDVGYSDDEQVSRIAADLEAVFDVPVQVSAVLGRSKMDV 60

Query: 61  GDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS 116
           G+LLKLGPGTVLELDR+VGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER+
Sbjct: 61  GELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERA 116


>ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5]
 gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5]
          Length = 116

 Score =  198 bits (503), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 108/116 (93%)

Query: 1   MSDTDTQVPLPDLNSAEAPGIDDIGYNEDEHAARIAADLEAVFDVPVQVSAVLGRSKMDV 60
           M + D QVPLPDLNSA+AP + D+GYNE+E  +R+AADLEAVFDVPVQVSAVLGRSKMDV
Sbjct: 1   MGENDGQVPLPDLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDV 60

Query: 61  GDLLKLGPGTVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS 116
           G+LLKLGPG VLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER+
Sbjct: 61  GELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERN 116