BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0024.p (461 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576034.1| two component, sigma54 specific, Fis family tra... 812 0.0 ref|NP_773643.1| two-component response regulator [Bradyrhizobiu... 806 0.0 ref|YP_530834.1| two component sigma54 specific Fis family trans... 792 0.0 ref|YP_317214.1| helix-turn-helix, Fis-type [Nitrobacter winogra... 788 0.0 ref|ZP_01044549.1| helix-turn-helix, Fis-type protein [Nitrobact... 787 0.0 >ref|YP_576034.1| two component, sigma54 specific, Fis family transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE61574.1| two component, sigma54 specific, transcriptional regulator, Fis family [Nitrobacter hamburgensis X14] Length = 459 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/450 (94%), Positives = 440/450 (97%) Query: 1 MRLLIVGTLKGQLTTATKIAMDNGASVTHAEAAEQAMNVLRGGKGADLLLVDVGLDIRDL 60 MRLLIVGTLKGQLTTATKIAMDNGASVTHA EQAM VLRGGKGADLLLVDVGLDIRDL Sbjct: 1 MRLLIVGTLKGQLTTATKIAMDNGASVTHATGNEQAMAVLRGGKGADLLLVDVGLDIRDL 60 Query: 61 VMRLEAEHIHVPIVACGISNDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVANDARDL 120 VMRLEAEHIHVPIVACGI++DARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVAND+RDL Sbjct: 61 VMRLEAEHIHVPIVACGITSDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVANDSRDL 120 Query: 121 IWRDEAMGRVIKLAQQIAGSDASVMITGESGTGKEVLARYVHSRSARAKRPFISINCAAI 180 I+RDEAMG+VIKLAQQIA SDAS+MITGESGTGKEVLARYVH+RS RA+RPFISINCAAI Sbjct: 121 IYRDEAMGKVIKLAQQIACSDASIMITGESGTGKEVLARYVHTRSNRARRPFISINCAAI 180 Query: 181 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV 240 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV Sbjct: 181 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV 240 Query: 241 IDRVGGTKPVPVDIRIIATSNRNLSEAVREGTFREDLLFRLNVVNLKIPPLRDRPADILE 300 IDRVGG +PVPVDIRIIATSNRNL++AVREGTFREDLLFRLNVVNLKIPPLR+RPADILE Sbjct: 241 IDRVGGNRPVPVDIRIIATSNRNLADAVREGTFREDLLFRLNVVNLKIPPLRERPADILE 300 Query: 301 LAQHFARKYAEANGMPVRPISADARRVLTANRWQGNVRELENTIHRAVLMAQGDEIGSDA 360 LAQHFA+KYAEANG+PVRP+SADARRVLT NRWQGNVRELENTIHRAVLMA GDEIG+DA Sbjct: 301 LAQHFAKKYAEANGVPVRPVSADARRVLTTNRWQGNVRELENTIHRAVLMASGDEIGADA 360 Query: 361 ILTPDGDRLDLAKTAPAVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA 420 ILTPDGDRLDLAKTAP VAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA Sbjct: 361 ILTPDGDRLDLAKTAPVVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA 420 Query: 421 NILGISIRTLRNKLNEYADGGIPITPAGNG 450 NILGISIRTLRNKLNEYADGGIPITPAGNG Sbjct: 421 NILGISIRTLRNKLNEYADGGIPITPAGNG 450 >ref|NP_773643.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52268.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 461 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/461 (91%), Positives = 441/461 (95%), Gaps = 1/461 (0%) Query: 1 MRLLIVGTLKGQLTTATKIAMDNGASVTHAEAAEQAMNVLRGGKGADLLLVDVGLDIRDL 60 MRLLIVGTLKGQLTTATKIAM+NGA+VTHAE EQAM VLRGGKGADLLLVDV LDIRDL Sbjct: 1 MRLLIVGTLKGQLTTATKIAMENGATVTHAEDHEQAMRVLRGGKGADLLLVDVALDIRDL 60 Query: 61 VMRLEAEHIHVPIVACGISNDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVANDARDL 120 VMRLEAEHIH PIVACGI+NDARAAVAAI AGAKEYIPLPPDPELIAAVLAAVAND+R+L Sbjct: 61 VMRLEAEHIHAPIVACGITNDARAAVAAIRAGAKEYIPLPPDPELIAAVLAAVANDSREL 120 Query: 121 IWRDEAMGRVIKLAQQIAGSDASVMITGESGTGKEVLARYVHSRSARAKRPFISINCAAI 180 ++RDEAM +VIKLAQQIAGSDASVMITGESGTGKEVLARYVH+RSARAKRPFISINCAAI Sbjct: 121 VYRDEAMAKVIKLAQQIAGSDASVMITGESGTGKEVLARYVHTRSARAKRPFISINCAAI 180 Query: 181 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV 240 PEHLLESELFGHEKGAFTGA+ARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV Sbjct: 181 PEHLLESELFGHEKGAFTGAIARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV 240 Query: 241 IDRVGGTKPVPVDIRIIATSNRNLSEAVREGTFREDLLFRLNVVNLKIPPLRDRPADILE 300 IDRVGGTKPVPVDIRIIATSNRNL+EAVREGTFREDLLFRLNVVNLKIPPLR+RP DILE Sbjct: 241 IDRVGGTKPVPVDIRIIATSNRNLAEAVREGTFREDLLFRLNVVNLKIPPLRERPLDILE 300 Query: 301 LAQHFARKYAEANGMPVRPISADARRVLTANRWQGNVRELENTIHRAVLMAQGDEIGSDA 360 LAQHF +KYAEANG+P+RPISA+ARRVL+ NRWQGNVRELENT+HR+VLMAQGDEIG DA Sbjct: 301 LAQHFVKKYAEANGVPMRPISAEARRVLSTNRWQGNVRELENTMHRSVLMAQGDEIGPDA 360 Query: 361 ILTPDGDRLDLAKTAPAVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA 420 ILTPDGDRLDLAKT PAVAHAT+AAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA Sbjct: 361 ILTPDGDRLDLAKTVPAVAHATMAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA 420 Query: 421 NILGISIRTLRNKLNEYADGGIPITPAGNGAPDYQRMANAG 461 NILGISIRTLRNKLNEYADGGIPITPAG +Y RM G Sbjct: 421 NILGISIRTLRNKLNEYADGGIPITPAGTPG-EYPRMPMVG 460 >ref|YP_530834.1| two component sigma54 specific Fis family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD86515.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris BisB18] Length = 459 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/450 (92%), Positives = 440/450 (97%) Query: 1 MRLLIVGTLKGQLTTATKIAMDNGASVTHAEAAEQAMNVLRGGKGADLLLVDVGLDIRDL 60 MRLLIVGTLKGQLTTATKIAMDNGASVTH+E EQAM VLRGGKGADLLLVDV LDIRDL Sbjct: 1 MRLLIVGTLKGQLTTATKIAMDNGASVTHSENNEQAMRVLRGGKGADLLLVDVALDIRDL 60 Query: 61 VMRLEAEHIHVPIVACGISNDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVANDARDL 120 VMRLEAEHIHVPIVACGI+NDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVAND+R+L Sbjct: 61 VMRLEAEHIHVPIVACGIANDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVANDSREL 120 Query: 121 IWRDEAMGRVIKLAQQIAGSDASVMITGESGTGKEVLARYVHSRSARAKRPFISINCAAI 180 I+RD+AM +VIKLAQQIAGSDASVMITGESGTGKEVLARYVHSRS RAK+PFISINCAAI Sbjct: 121 IYRDDAMAKVIKLAQQIAGSDASVMITGESGTGKEVLARYVHSRSNRAKKPFISINCAAI 180 Query: 181 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV 240 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV Sbjct: 181 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV 240 Query: 241 IDRVGGTKPVPVDIRIIATSNRNLSEAVREGTFREDLLFRLNVVNLKIPPLRDRPADILE 300 IDRVGGT+PVP+DIRIIATSNRNL++ VREGTFREDLLFRLNVVNLKIPPLR+RPADILE Sbjct: 241 IDRVGGTRPVPIDIRIIATSNRNLADVVREGTFREDLLFRLNVVNLKIPPLRERPADILE 300 Query: 301 LAQHFARKYAEANGMPVRPISADARRVLTANRWQGNVRELENTIHRAVLMAQGDEIGSDA 360 LAQHFA+KYA+ANG+ +RPISA+ARRVL++NRWQGNVRELENTIHRAVLMAQGDEIG +A Sbjct: 301 LAQHFAKKYADANGVALRPISAEARRVLSSNRWQGNVRELENTIHRAVLMAQGDEIGPEA 360 Query: 361 ILTPDGDRLDLAKTAPAVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA 420 I++PDGDRLDL KTAPAVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA Sbjct: 361 IISPDGDRLDLPKTAPAVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA 420 Query: 421 NILGISIRTLRNKLNEYADGGIPITPAGNG 450 NILGISIRTLRNKLNEYADGG+P+TPAG+G Sbjct: 421 NILGISIRTLRNKLNEYADGGLPVTPAGSG 450 >ref|YP_317214.1| helix-turn-helix, Fis-type [Nitrobacter winogradskyi Nb-255] gb|ABA03862.1| two component, sigma54 specific, transcriptional regulator, Fis family [Nitrobacter winogradskyi Nb-255] Length = 459 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/449 (91%), Positives = 436/449 (97%) Query: 1 MRLLIVGTLKGQLTTATKIAMDNGASVTHAEAAEQAMNVLRGGKGADLLLVDVGLDIRDL 60 MRLLIVG+LKGQLTTATKIAMDNGASVTHAE+ EQAM V+RGGKGADLLLVDVGLDIRDL Sbjct: 1 MRLLIVGSLKGQLTTATKIAMDNGASVTHAESNEQAMAVVRGGKGADLLLVDVGLDIRDL 60 Query: 61 VMRLEAEHIHVPIVACGISNDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVANDARDL 120 V+RLEAEHIHVPIVACGI +DARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVAND+RDL Sbjct: 61 VLRLEAEHIHVPIVACGIVSDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVANDSRDL 120 Query: 121 IWRDEAMGRVIKLAQQIAGSDASVMITGESGTGKEVLARYVHSRSARAKRPFISINCAAI 180 ++RDEAM RVIKLAQQIAGSDASVMITGESGTGKEVLAR+VH+RS RAKRPFISINCAAI Sbjct: 121 VYRDEAMARVIKLAQQIAGSDASVMITGESGTGKEVLARHVHARSNRAKRPFISINCAAI 180 Query: 181 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV 240 PEHLLESELFGHEKGAFTGA+ARRIGKFEEA+GGTLLLDEISEMDVRLQSKLLRAIQERV Sbjct: 181 PEHLLESELFGHEKGAFTGAIARRIGKFEEASGGTLLLDEISEMDVRLQSKLLRAIQERV 240 Query: 241 IDRVGGTKPVPVDIRIIATSNRNLSEAVREGTFREDLLFRLNVVNLKIPPLRDRPADILE 300 IDRVGG +PVPVDIRIIATSNRNL++AVR+GTFREDLLFRLNVVNLKIPPLR+RPADI+E Sbjct: 241 IDRVGGARPVPVDIRIIATSNRNLADAVRQGTFREDLLFRLNVVNLKIPPLRERPADIIE 300 Query: 301 LAQHFARKYAEANGMPVRPISADARRVLTANRWQGNVRELENTIHRAVLMAQGDEIGSDA 360 LAQHF RKYA ANG+P RP+SADARRVL+ANRWQGNVRELENTIHRAVLMA GDEIG+DA Sbjct: 301 LAQHFIRKYAAANGVPARPLSADARRVLSANRWQGNVRELENTIHRAVLMANGDEIGADA 360 Query: 361 ILTPDGDRLDLAKTAPAVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA 420 ILTP+GDRLDL +TAPAVAHATLAAEQVTRALVGRTVA+VERDLILETLKHCLGNRTHAA Sbjct: 361 ILTPEGDRLDLIRTAPAVAHATLAAEQVTRALVGRTVANVERDLILETLKHCLGNRTHAA 420 Query: 421 NILGISIRTLRNKLNEYADGGIPITPAGN 449 NILGISIRTLRNKLNEYAD GI ITPAGN Sbjct: 421 NILGISIRTLRNKLNEYADDGIAITPAGN 449 >ref|ZP_01044549.1| helix-turn-helix, Fis-type protein [Nitrobacter sp. Nb-311A] gb|EAQ37330.1| helix-turn-helix, Fis-type protein [Nitrobacter sp. Nb-311A] Length = 459 Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/449 (91%), Positives = 435/449 (96%) Query: 1 MRLLIVGTLKGQLTTATKIAMDNGASVTHAEAAEQAMNVLRGGKGADLLLVDVGLDIRDL 60 MRLLIVGTLKGQLTTATKIAMDNGASVTHA EQAM VLRGGKGADLLLVDVGLDIRDL Sbjct: 1 MRLLIVGTLKGQLTTATKIAMDNGASVTHAAGNEQAMAVLRGGKGADLLLVDVGLDIRDL 60 Query: 61 VMRLEAEHIHVPIVACGISNDARAAVAAIHAGAKEYIPLPPDPELIAAVLAAVANDARDL 120 V+RLEAEHIHVPIVACGI NDARAAVAAIHAGAKEYIPLPPDPELIAA+LAAVA+D+R+L Sbjct: 61 VIRLEAEHIHVPIVACGIVNDARAAVAAIHAGAKEYIPLPPDPELIAAILAAVASDSREL 120 Query: 121 IWRDEAMGRVIKLAQQIAGSDASVMITGESGTGKEVLARYVHSRSARAKRPFISINCAAI 180 ++RDEAM RVIKLAQQIAGSDASVMITGESGTGKEVLAR+VH+RS RAKRPFISINCAAI Sbjct: 121 VYRDEAMARVIKLAQQIAGSDASVMITGESGTGKEVLARHVHARSNRAKRPFISINCAAI 180 Query: 181 PEHLLESELFGHEKGAFTGAVARRIGKFEEATGGTLLLDEISEMDVRLQSKLLRAIQERV 240 PEHLLESELFGHEKGAFTGAVARRIGKFEEA+GGTLLLDEISEMDVRLQSKLLRAIQERV Sbjct: 181 PEHLLESELFGHEKGAFTGAVARRIGKFEEASGGTLLLDEISEMDVRLQSKLLRAIQERV 240 Query: 241 IDRVGGTKPVPVDIRIIATSNRNLSEAVREGTFREDLLFRLNVVNLKIPPLRDRPADILE 300 IDRVGGT+PVPVDIRIIATSNRNL++AVR+G+FREDLLFRLNVVNLKIPPLR+RPADILE Sbjct: 241 IDRVGGTRPVPVDIRIIATSNRNLADAVRQGSFREDLLFRLNVVNLKIPPLRERPADILE 300 Query: 301 LAQHFARKYAEANGMPVRPISADARRVLTANRWQGNVRELENTIHRAVLMAQGDEIGSDA 360 LAQHF RKYA ANG+P RPISADARRVLTANRWQGNVRELENTIHRAVLMA GDEIG++A Sbjct: 301 LAQHFIRKYAAANGVPARPISADARRVLTANRWQGNVRELENTIHRAVLMASGDEIGAEA 360 Query: 361 ILTPDGDRLDLAKTAPAVAHATLAAEQVTRALVGRTVADVERDLILETLKHCLGNRTHAA 420 ILTP+GDRLDLA+T PAVAHATLAAEQVTRALVGRTVA+VERDLILETLKHCLGNRTHAA Sbjct: 361 ILTPEGDRLDLARTPPAVAHATLAAEQVTRALVGRTVANVERDLILETLKHCLGNRTHAA 420 Query: 421 NILGISIRTLRNKLNEYADGGIPITPAGN 449 NILGISIRTLRNKLNEYAD G+ ITPAGN Sbjct: 421 NILGISIRTLRNKLNEYADEGVAITPAGN 449