BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0018.p         (187 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01047956.1| ribosome recycling factor [Nitrobacter sp. Nb...   347   5e-94
ref|YP_576973.1| ribosome recycling factor [Nitrobacter hamburge...   346   8e-94
ref|YP_318468.1| ribosome recycling factor [Nitrobacter winograd...   343   8e-93
ref|YP_532309.1| ribosome recycling factor [Rhodopseudomonas pal...   342   1e-92
ref|YP_001240452.1| ribosome recycling factor [Bradyrhizobium sp...   342   2e-92

>ref|ZP_01047956.1| ribosome recycling factor [Nitrobacter sp. Nb-311A]
 gb|EAQ34090.1| ribosome recycling factor [Nitrobacter sp. Nb-311A]
          Length = 187

 Score =  347 bits (890), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 169/187 (90%), Positives = 181/187 (96%)

Query: 1   MAAPGFDINDVKRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATIS 60
           MA+  FDI D+KRRMQGATQSLKHELGGLRTGRA+ASML+PVQV+AYGSHMPLNQVATIS
Sbjct: 1   MASGSFDIGDLKRRMQGATQSLKHELGGLRTGRASASMLDPVQVDAYGSHMPLNQVATIS 60

Query: 61  VPEPRLLSVQVWDKTMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 120
           VPEPRLLSVQVWDK+MVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH
Sbjct: 61  VPEPRLLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 120

Query: 121 KYAEAAKVAVRHVRRDGLDVIKKLEKNHEISEDDQERLSNEVQKATDGMIAEIDQLLAAK 180
           KYAEAAKVAVRHVRRDGLD +KKLEK HEISEDD++RL+NEVQKATDG+I+EIDQLLA K
Sbjct: 121 KYAEAAKVAVRHVRRDGLDTLKKLEKTHEISEDDEKRLANEVQKATDGVISEIDQLLAGK 180

Query: 181 EKEILTV 187
           EKEILTV
Sbjct: 181 EKEILTV 187


>ref|YP_576973.1| ribosome recycling factor [Nitrobacter hamburgensis X14]
 gb|ABE62513.1| ribosome recycling factor [Nitrobacter hamburgensis X14]
          Length = 194

 Score =  346 bits (888), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 170/187 (90%), Positives = 180/187 (96%)

Query: 1   MAAPGFDINDVKRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATIS 60
           M A  FDIN++KRRMQGA QSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATIS
Sbjct: 8   MTAGNFDINELKRRMQGAIQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATIS 67

Query: 61  VPEPRLLSVQVWDKTMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 120
           VPE RLLSVQVWDK+MVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH
Sbjct: 68  VPESRLLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 127

Query: 121 KYAEAAKVAVRHVRRDGLDVIKKLEKNHEISEDDQERLSNEVQKATDGMIAEIDQLLAAK 180
           KYAEAAKVAVRHVRRDGLD IKKLEKNHEISEDD++RL+N+VQKATDG+I+EID+LLA K
Sbjct: 128 KYAEAAKVAVRHVRRDGLDTIKKLEKNHEISEDDEKRLANDVQKATDGVISEIDELLAGK 187

Query: 181 EKEILTV 187
           EKEILTV
Sbjct: 188 EKEILTV 194


>ref|YP_318468.1| ribosome recycling factor [Nitrobacter winogradskyi Nb-255]
 sp|Q3SRH5.1|RRF_NITWN RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
           Full=Ribosome-releasing factor
 gb|ABA05116.1| ribosome recycling factor [Nitrobacter winogradskyi Nb-255]
          Length = 187

 Score =  343 bits (879), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 166/187 (88%), Positives = 180/187 (96%)

Query: 1   MAAPGFDINDVKRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATIS 60
           M +  FDI D+KRRMQGATQSLKHELGGLRTGRA++SML+PVQV+AYGSHMPLNQVATIS
Sbjct: 1   MVSGSFDIGDLKRRMQGATQSLKHELGGLRTGRASSSMLDPVQVDAYGSHMPLNQVATIS 60

Query: 61  VPEPRLLSVQVWDKTMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 120
           VPEPRLLSVQVWDK+MVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH
Sbjct: 61  VPEPRLLSVQVWDKSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 120

Query: 121 KYAEAAKVAVRHVRRDGLDVIKKLEKNHEISEDDQERLSNEVQKATDGMIAEIDQLLAAK 180
           KYAEAAKVAVRHVRRDGLD +KKLEKNHEISEDD++RL+N+VQKATD +I+EIDQLLA K
Sbjct: 121 KYAEAAKVAVRHVRRDGLDTLKKLEKNHEISEDDEKRLANDVQKATDSVISEIDQLLAGK 180

Query: 181 EKEILTV 187
           EKEILTV
Sbjct: 181 EKEILTV 187


>ref|YP_532309.1| ribosome recycling factor [Rhodopseudomonas palustris BisB18]
 sp|Q215E6.1|RRF_RHOPB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
           Full=Ribosome-releasing factor
 gb|ABD87990.1| ribosome recycling factor [Rhodopseudomonas palustris BisB18]
          Length = 187

 Score =  342 bits (877), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/187 (89%), Positives = 178/187 (95%)

Query: 1   MAAPGFDINDVKRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATIS 60
           M   GFDIN++KRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQ+AT+S
Sbjct: 1   MPTGGFDINELKRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQLATVS 60

Query: 61  VPEPRLLSVQVWDKTMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 120
           VPEPRLLSVQVWD++MVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH
Sbjct: 61  VPEPRLLSVQVWDRSMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 120

Query: 121 KYAEAAKVAVRHVRRDGLDVIKKLEKNHEISEDDQERLSNEVQKATDGMIAEIDQLLAAK 180
           KYAEA +VAVRHVRRDGLD +KKLEKN EISEDDQERL++EVQKATD  I E+DQLLAAK
Sbjct: 121 KYAEATRVAVRHVRRDGLDTLKKLEKNSEISEDDQERLAHEVQKATDATILEVDQLLAAK 180

Query: 181 EKEILTV 187
           EKEILTV
Sbjct: 181 EKEILTV 187


>ref|YP_001240452.1| ribosome recycling factor [Bradyrhizobium sp. BTAi1]
 sp|A5EK52.1|RRF_BRASB RecName: Full=Ribosome-recycling factor; Short=RRF; AltName:
           Full=Ribosome-releasing factor
 gb|ABQ36546.1| ribosome recycling factor [Bradyrhizobium sp. BTAi1]
          Length = 187

 Score =  342 bits (876), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 162/187 (86%), Positives = 181/187 (96%)

Query: 1   MAAPGFDINDVKRRMQGATQSLKHELGGLRTGRAAASMLEPVQVEAYGSHMPLNQVATIS 60
           M+   FD+N++KRRMQGATQ+LKHELGGLRTGRA+ASM+EPVQVEAYGSHMPLNQ+AT+S
Sbjct: 1   MSTGNFDLNELKRRMQGATQALKHELGGLRTGRASASMVEPVQVEAYGSHMPLNQLATVS 60

Query: 61  VPEPRLLSVQVWDKTMVKAVEKAIVDSNLGLSPATEGQVLRLRIPELNEERRKELVKVAH 120
           VPEPRLLSVQVWD+TMVKAVEKAIVDSNLGLSPATEGQV+RLRIPELN+ERRKELVKVAH
Sbjct: 61  VPEPRLLSVQVWDRTMVKAVEKAIVDSNLGLSPATEGQVIRLRIPELNQERRKELVKVAH 120

Query: 121 KYAEAAKVAVRHVRRDGLDVIKKLEKNHEISEDDQERLSNEVQKATDGMIAEIDQLLAAK 180
           KYAEAA+VAVRHVRRDGLD +KKLEKNHEISEDDQERL+ ++QKATD +I+EIDQLLAAK
Sbjct: 121 KYAEAARVAVRHVRRDGLDTVKKLEKNHEISEDDQERLATDIQKATDSVISEIDQLLAAK 180

Query: 181 EKEILTV 187
           EKEILTV
Sbjct: 181 EKEILTV 187