BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0017.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771497.1| undecaprenyl pyrophosphate synthase [Bradyrhizo...   178   3e-43
ref|YP_576974.1| undecaprenyl diphosphate synthase [Nitrobacter ...   170   5e-41
ref|YP_001240451.1| undecaprenyl pyrophosphate synthase [Bradyrh...   169   2e-40
ref|YP_781475.1| undecaprenyl pyrophosphate synthase [Rhodopseud...   168   3e-40
ref|YP_532310.1| undecaprenyl pyrophosphate synthase [Rhodopseud...   167   4e-40

>ref|NP_771497.1| undecaprenyl pyrophosphate synthase [Bradyrhizobium japonicum USDA
           110]
 sp|Q89KP7.1|UPPS2_BRAJA RecName: Full=Undecaprenyl pyrophosphate synthase 2; Short=UPP
           synthase 2; AltName:
           Full=Di-trans,poly-cis-decaprenylcistransferase 2;
           AltName: Full=Undecaprenyl diphosphate synthase 2;
           Short=UDS 2
 dbj|BAC50122.1| undecaprenyl pyrophosphate synthase [Bradyrhizobium japonicum USDA
           110]
          Length = 252

 Score =  178 bits (451), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/130 (71%), Positives = 104/130 (80%), Gaps = 13/130 (10%)

Query: 1   MSNAAAPATDGPDRTGSPLHVAVIMDGNGRX------------RRGVEALRRVVRAAHEL 48
           MSNAAAPAT+GPDR+ +P HVA+IMDGNGR             RRGVEALRRVVRA+HEL
Sbjct: 1   MSNAAAPATEGPDRSDAPAHVAIIMDGNGRWAAARGLPRAEGHRRGVEALRRVVRASHEL 60

Query: 49  GIVYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIGQRDRL-GDV 107
           GI YLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLA+LHRDGV+VR+IG+RD L  D+
Sbjct: 61  GIRYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLASLHRDGVKVRIIGERDGLESDI 120

Query: 108 VRHQDRGEAL 117
               +  E L
Sbjct: 121 CALLNEAEEL 130


>ref|YP_576974.1| undecaprenyl diphosphate synthase [Nitrobacter hamburgensis X14]
 gb|ABE62514.1| Undecaprenyl pyrophosphate synthetase [Nitrobacter hamburgensis
           X14]
          Length = 252

 Score =  170 bits (431), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 94/113 (83%), Gaps = 12/113 (10%)

Query: 1   MSNAAAPATDGPDRTGSPLHVAVIMDGNGRX------------RRGVEALRRVVRAAHEL 48
           MSNAAAPA +G D T +P HVA+IMDGNGR             RRGVEALRRVVRAAHEL
Sbjct: 1   MSNAAAPAANGSDHTDAPPHVAIIMDGNGRWAASRGLPRAEGHRRGVEALRRVVRAAHEL 60

Query: 49  GIVYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIGQR 101
           GI YLTIFSFSSENWSRPA+EIGDLFGLLRRFIRNDLA+LHRDGVRVRVIG+R
Sbjct: 61  GIQYLTIFSFSSENWSRPATEIGDLFGLLRRFIRNDLASLHRDGVRVRVIGER 113


>ref|YP_001240451.1| undecaprenyl pyrophosphate synthase [Bradyrhizobium sp. BTAi1]
 gb|ABQ36545.1| Undecaprenyl pyrophosphate synthetase [Bradyrhizobium sp. BTAi1]
          Length = 251

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/116 (77%), Positives = 95/116 (81%), Gaps = 13/116 (11%)

Query: 1   MSNAAAPATDGPDRTGSPLHVAVIMDGNGRX------------RRGVEALRRVVRAAHEL 48
           M+NAAAP T  PDR+  P HVA+IMDGNGR             RRGVEALRRVVRA+HEL
Sbjct: 1   MTNAAAPMT-APDRSDGPAHVAIIMDGNGRWAAARGLPRAEGHRRGVEALRRVVRASHEL 59

Query: 49  GIVYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIGQRDRL 104
           GI YLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIG+RD L
Sbjct: 60  GIRYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIGERDGL 115


>ref|YP_781475.1| undecaprenyl pyrophosphate synthase [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ06495.1| Undecaprenyl pyrophosphate synthetase [Rhodopseudomonas palustris
           BisA53]
          Length = 252

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 94/116 (81%), Gaps = 12/116 (10%)

Query: 1   MSNAAAPATDGPDRTGSPLHVAVIMDGNGRX------------RRGVEALRRVVRAAHEL 48
           MSNAAAP  DGPD +  PLHVA+IMDGNGR             RRGV+ALRRVVRA+ EL
Sbjct: 1   MSNAAAPLPDGPDSSEPPLHVAIIMDGNGRWAKARGLPRAEGHRRGVDALRRVVRASGEL 60

Query: 49  GIVYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIGQRDRL 104
           GI+YLTIFSFSSENWSRPASEI DLFGLLRRFIRNDLA LHRDGVRVRVIG+RD L
Sbjct: 61  GILYLTIFSFSSENWSRPASEITDLFGLLRRFIRNDLANLHRDGVRVRVIGERDGL 116


>ref|YP_532310.1| undecaprenyl pyrophosphate synthase [Rhodopseudomonas palustris
           BisB18]
 gb|ABD87991.1| Undecaprenyl pyrophosphate synthetase [Rhodopseudomonas palustris
           BisB18]
          Length = 252

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 94/116 (81%), Gaps = 12/116 (10%)

Query: 1   MSNAAAPATDGPDRTGSPLHVAVIMDGNGRX------------RRGVEALRRVVRAAHEL 48
           MSN AAPA D  D +  P+HVA+IMDGNGR             RRGV+ALRRVVRAA+EL
Sbjct: 1   MSNVAAPAPDRSDSSEVPVHVAIIMDGNGRWAAARGLPRAEGHRRGVDALRRVVRAANEL 60

Query: 49  GIVYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIGQRDRL 104
           GI YLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIG+RD L
Sbjct: 61  GIAYLTIFSFSSENWSRPASEIGDLFGLLRRFIRNDLATLHRDGVRVRVIGERDGL 116