BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0005.p         (96 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001237963.1| hypothetical protein BBta_1854 [Bradyrhizobi...   163   9e-39
ref|YP_001207802.1| hypothetical protein BRADO5928 [Bradyrhizobi...   156   8e-37
ref|YP_002288144.1| hypothetical protein OCAR_5146 [Oligotropha ...   150   7e-35
ref|ZP_07025185.1| conserved hypothetical protein [Afipia sp. 1N...   149   1e-34
ref|YP_533685.1| hypothetical protein RPC_3832 [Rhodopseudomonas...   147   6e-34

>ref|YP_001237963.1| hypothetical protein BBta_1854 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34057.1| hypothetical protein BBta_1854 [Bradyrhizobium sp. BTAi1]
          Length = 94

 Score =  163 bits (412), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 84/96 (87%), Positives = 89/96 (92%), Gaps = 2/96 (2%)

Query: 1  MRPLRPFNYNTSAELFPAAIRKKKRAGFAYRRFGTAAEAVQFAMEQLPADSLNGAYLQVE 60
          MRP+RPFN+NTSAELFPAAIRKKKRAGFAYRRFGTAAEAV+FAME+LPADSLNGAYLQVE
Sbjct: 1  MRPMRPFNFNTSAELFPAAIRKKKRAGFAYRRFGTAAEAVRFAMEELPADSLNGAYLQVE 60

Query: 61 EARFDQNGIRSLYESEAFPLPRRPRPAASQTDADAA 96
          EARFDQNGIR+LYESEAFPLPRR    A   DADAA
Sbjct: 61 EARFDQNGIRTLYESEAFPLPRRAVEKAP--DADAA 94


>ref|YP_001207802.1| hypothetical protein BRADO5928 [Bradyrhizobium sp. ORS 278]
 emb|CAL79587.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 91

 Score =  156 bits (395), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/90 (86%), Positives = 83/90 (92%)

Query: 4  LRPFNYNTSAELFPAAIRKKKRAGFAYRRFGTAAEAVQFAMEQLPADSLNGAYLQVEEAR 63
          +RPFN+NTSAELFPAAIRKKKRAGFAYRRFGTAAEAV+FAME+LPADSLNGAYLQVEEAR
Sbjct: 1  MRPFNFNTSAELFPAAIRKKKRAGFAYRRFGTAAEAVRFAMEELPADSLNGAYLQVEEAR 60

Query: 64 FDQNGIRSLYESEAFPLPRRPRPAASQTDA 93
          FDQNGIR+LYESEAFPLPRR    A   DA
Sbjct: 61 FDQNGIRTLYESEAFPLPRRAVDKAPDADA 90


>ref|YP_002288144.1| hypothetical protein OCAR_5146 [Oligotropha carboxidovorans OM5]
 ref|YP_004633754.1| hypothetical protein OCA5_c28210 [Oligotropha carboxidovorans
          OM5]
 gb|ACI92279.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
 gb|AEI03936.1| hypothetical protein OCA4_c28200 [Oligotropha carboxidovorans
          OM4]
 gb|AEI07513.1| hypothetical protein OCA5_c28210 [Oligotropha carboxidovorans
          OM5]
          Length = 96

 Score =  150 bits (379), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 7  FNYNTSAELFPAAIRKKKRAGFAYRRFGTAAEAVQFAMEQLPADSLNGAYLQVEEARFDQ 66
          FNYNT AELFPAAIRKKKRAGFAYRRFGTAAEAVQFA+EQLPADSLNGAYLQV+EARFDQ
Sbjct: 4  FNYNTEAELFPAAIRKKKRAGFAYRRFGTAAEAVQFAIEQLPADSLNGAYLQVDEARFDQ 63

Query: 67 NGIRSLYESEAFPLPRR 83
          NGIRSLYES AFPLPRR
Sbjct: 64 NGIRSLYESSAFPLPRR 80


>ref|ZP_07025185.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI52327.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 98

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 7  FNYNTSAELFPAAIRKKKRAGFAYRRFGTAAEAVQFAMEQLPADSLNGAYLQVEEARFDQ 66
          FNYNT AELFPAAIRKKKRAGFAYRRFGTAAEAVQFA+EQLPADSLNGAYLQV+EARFDQ
Sbjct: 4  FNYNTEAELFPAAIRKKKRAGFAYRRFGTAAEAVQFAIEQLPADSLNGAYLQVDEARFDQ 63

Query: 67 NGIRSLYESEAFPLPRR 83
          NGIRSLYES AFPLPRR
Sbjct: 64 NGIRSLYESSAFPLPRR 80


>ref|YP_533685.1| hypothetical protein RPC_3832 [Rhodopseudomonas palustris BisB18]
 gb|ABD89366.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 96

 Score =  147 bits (370), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 81/93 (87%), Gaps = 3/93 (3%)

Query: 7  FNYNTSAELFPAAIRKKKRAGFAYRRFGTAAEAVQFAMEQLPADSLNGAYLQVEEARFDQ 66
          FNYNT+AELFPAAIRKKKRAGFAYRRF TAA AVQFA+EQLPADSLNGAYLQV+EARFDQ
Sbjct: 4  FNYNTAAELFPAAIRKKKRAGFAYRRFDTAAAAVQFAIEQLPADSLNGAYLQVDEARFDQ 63

Query: 67 NGIRSLYESEAFPLPRRP---RPAASQTDADAA 96
          +GIR+LYESEAFPL RR     P AS  D DAA
Sbjct: 64 SGIRTLYESEAFPLERRAPVEEPVASDADQDAA 96