BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0004.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576433.1| hypothetical protein Nham_1126 [Nitrobacter ham... 249 1e-64 ref|NP_773686.1| hypothetical protein bll7046 [Bradyrhizobium ja... 240 7e-62 ref|YP_001237962.1| hypothetical protein BBta_1853 [Bradyrhizobi... 239 1e-61 ref|YP_001207803.1| hypothetical protein BRADO5929 [Bradyrhizobi... 236 8e-61 ref|YP_319564.1| hypothetical protein Nwi_2962 [Nitrobacter wino... 233 1e-59 >ref|YP_576433.1| hypothetical protein Nham_1126 [Nitrobacter hamburgensis X14] gb|ABE61973.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 183 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 132/190 (69%), Positives = 149/190 (78%), Gaps = 15/190 (7%) Query: 2 AMPEDDIFTPNAARSRPPFGGAQARGKVIDQDGRELADGPL------HPQFQGFQGAFPE 55 +MP+DD+F+ N ARSR G+ AR K+IDQDGRE+ GPL F FQ P Sbjct: 3 SMPDDDLFSRNTARSR----GSSARAKIIDQDGREIDPGPLGADGFDASAFGAFQHG-PS 57 Query: 56 GFRFDFRNSTANPFGDLTREQRLQRLETIAKLLDVAFIVPGTNVRYGIDGLIGLIPVVGD 115 FDF + F LTREQRL RLE IAKLLDVAF+VPGT +RYGIDGLIGL+PV+GD Sbjct: 58 ASGFDFSAA----FQPLTREQRLARLEAIAKLLDVAFVVPGTKIRYGIDGLIGLVPVIGD 113 Query: 116 IITTAISLWLVREARLLGAPWHITARMLANVAVDGVIGMVPVAGDAFDVMFRANIRNVRM 175 I+TTAISLWLVREAR LGAPWHITARML NVAVDGV+G+VPVAGDAFDVMFRANIRN+RM Sbjct: 114 ILTTAISLWLVREARALGAPWHITARMLGNVAVDGVVGLVPVAGDAFDVMFRANIRNMRM 173 Query: 176 LRRWLDKQPR 185 LRRWLD+QPR Sbjct: 174 LRRWLDRQPR 183 >ref|NP_773686.1| hypothetical protein bll7046 [Bradyrhizobium japonicum USDA 110] dbj|BAC52311.1| bll7046 [Bradyrhizobium japonicum USDA 110] Length = 185 Score = 240 bits (613), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 128/190 (67%), Positives = 148/190 (77%), Gaps = 9/190 (4%) Query: 1 MAMPEDDIFTPNAARSR----PPFGGAQARGKVIDQDGRELADGPLHPQFQGFQGAFPEG 56 M M +DDI P +RS F G + RG +IDQDGRE+ L F+ F+ F +G Sbjct: 1 MTMSDDDILAPRKSRSGSRSRATFSGTEPRGPIIDQDGREIRPETLERGFREFRFEFGQG 60 Query: 57 FRFDFRNSTANPFGDLTREQRLQRLETIAKLLDVAFIVPGTNVRYGIDGLIGLIPVVGDI 116 + NPFG+LTREQR+ RLE IAKLLDVAFI+PGTN+RYGIDGLIGLIPVVGDI Sbjct: 61 -----QPLGGNPFGNLTREQRIARLEAIAKLLDVAFILPGTNIRYGIDGLIGLIPVVGDI 115 Query: 117 ITTAISLWLVREARLLGAPWHITARMLANVAVDGVIGMVPVAGDAFDVMFRANIRNVRML 176 ITTAISLWLVREAR LGAPW++TARML NVAVDGV+GMVP+AGDAFDVMFRAN+RN+R+L Sbjct: 116 ITTAISLWLVREARALGAPWYLTARMLGNVAVDGVVGMVPLAGDAFDVMFRANMRNMRLL 175 Query: 177 RRWLDKQPRF 186 RRWLDKQPR Sbjct: 176 RRWLDKQPRI 185 >ref|YP_001237962.1| hypothetical protein BBta_1853 [Bradyrhizobium sp. BTAi1] gb|ABQ34056.1| hypothetical protein BBta_1853 [Bradyrhizobium sp. BTAi1] Length = 183 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/176 (68%), Positives = 140/176 (79%), Gaps = 5/176 (2%) Query: 11 PNAARSRPPFGGAQARGKVIDQDGRELADGPLH-PQFQGFQGAFPEGFRFDFRNSTANPF 69 P S+ F +ARG +IDQDGRE+ GP P F G P G RFDF+ T NPF Sbjct: 12 PTGRASQARFNAHEARGPIIDQDGREIPQGPFQGPSGGAFDG--PGGLRFDFQ--TTNPF 67 Query: 70 GDLTREQRLQRLETIAKLLDVAFIVPGTNVRYGIDGLIGLIPVVGDIITTAISLWLVREA 129 G+LTREQR+ RLE +AKLLDVAF++PGTN+RYGIDG+IGLIPVVGD+I TA+SLWLVREA Sbjct: 68 GNLTREQRVARLEAVAKLLDVAFVLPGTNIRYGIDGIIGLIPVVGDLIATALSLWLVREA 127 Query: 130 RLLGAPWHITARMLANVAVDGVIGMVPVAGDAFDVMFRANIRNVRMLRRWLDKQPR 185 R LGAPWH+ RML NVAV+GVIGMVPVAGDAFDV+FRAN+RN R+LRRWLD QPR Sbjct: 128 RALGAPWHVITRMLGNVAVEGVIGMVPVAGDAFDVLFRANMRNARILRRWLDTQPR 183 >ref|YP_001207803.1| hypothetical protein BRADO5929 [Bradyrhizobium sp. ORS 278] emb|CAL79588.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 183 Score = 236 bits (603), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 117/167 (70%), Positives = 137/167 (82%), Gaps = 5/167 (2%) Query: 20 FGGAQARGKVIDQDGRELADGPLHPQFQG-FQGAFPEGFRFDFRNSTANPFGDLTREQRL 78 F +ARG +IDQDGRE+ GP F F G P G RFDF+ ANPFG+LTREQR+ Sbjct: 21 FDAKEARGPIIDQDGREIPQGPFRSSFNAAFVG--PGGVRFDFQG--ANPFGNLTREQRI 76 Query: 79 QRLETIAKLLDVAFIVPGTNVRYGIDGLIGLIPVVGDIITTAISLWLVREARLLGAPWHI 138 RLE +AKLLDVAF+VPGTN+RYG+DG+IGLIPVVGD+I TA+SLWLVREAR LGAPWH+ Sbjct: 77 ARLEAVAKLLDVAFVVPGTNIRYGLDGIIGLIPVVGDLIATALSLWLVREARALGAPWHV 136 Query: 139 TARMLANVAVDGVIGMVPVAGDAFDVMFRANIRNVRMLRRWLDKQPR 185 RML NVAV+GV+GMVPVAGDAFDV+FRAN+RN ++LRRWLD QPR Sbjct: 137 ITRMLGNVAVEGVVGMVPVAGDAFDVLFRANMRNAKILRRWLDTQPR 183 >ref|YP_319564.1| hypothetical protein Nwi_2962 [Nitrobacter winogradskyi Nb-255] gb|ABA06212.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 180 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/189 (67%), Positives = 146/189 (77%), Gaps = 16/189 (8%) Query: 2 AMPEDDIFTPNAARSRPPFGGAQARGKVIDQDGRELADGPLHPQFQGFQ----GAFPEGF 57 +MP DD+F+ + A +R AR K+IDQDGRE+ P P GFQ GAF G Sbjct: 3 SMPNDDLFSRDNAGAR-----RSARAKIIDQDGREVHGDP--PGADGFQTGPFGAFQHGA 55 Query: 58 R-FDFRNSTANPFGDLTREQRLQRLETIAKLLDVAFIVPGTNVRYGIDGLIGLIPVVGDI 116 F+F A F LTREQRL RL+ IAKLLDVAF+VPGT VRYGIDGLIGL+PV+GD+ Sbjct: 56 SGFEF----AAAFQPLTREQRLARLDAIAKLLDVAFVVPGTKVRYGIDGLIGLVPVIGDL 111 Query: 117 ITTAISLWLVREARLLGAPWHITARMLANVAVDGVIGMVPVAGDAFDVMFRANIRNVRML 176 ITTA SLWLVREAR LGAPWHITARML+NVAVDGV+G+VPVAGDAFDVMFRAN+RNVRM Sbjct: 112 ITTAFSLWLVREARALGAPWHITARMLSNVAVDGVVGLVPVAGDAFDVMFRANMRNVRMF 171 Query: 177 RRWLDKQPR 185 +RWLD+QPR Sbjct: 172 KRWLDRQPR 180