BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0110.0003.p         (159 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02927319.1| cyclic nucleotide-binding protein, putative [...   106   1e-21
ref|ZP_02004207.1| conserved hypothetical protein [Beggiatoa sp....    99   2e-19
ref|YP_001517306.1| cyclic nucleotide-binding protein [Acaryochl...    98   4e-19
ref|YP_003848363.1| putative transcriptional regulator, Crp/Fnr ...    93   1e-17
gb|EGW61815.1| putative transcriptional regulator, Crp/Fnr famil...    92   3e-17

>ref|ZP_02927319.1| cyclic nucleotide-binding protein, putative [Verrucomicrobium
           spinosum DSM 4136]
          Length = 118

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 73/100 (73%)

Query: 58  AGGVIFREGEQANELFVIKSGYVRIQVGNKTMADLAPDTIFGEMALIDNEPRSATATALT 117
           AG VIF EGE  + L+V+K G V ++V  + +  +  D  FGEMA+I+N PR+ATA A  
Sbjct: 18  AGTVIFTEGEDGDSLYVVKEGEVELKVKGRLVEVVKADGFFGEMAIIENGPRTATAVASV 77

Query: 118 DVELVPVSEKQFLFLVSQTPHFALKVMRTLAQRLRTMNKG 157
           D EL+P++EK+F F+V + P+FAL VMR L++RLR++++G
Sbjct: 78  DCELIPINEKRFEFMVHEVPNFALHVMRGLSRRLRSVDEG 117


>ref|ZP_02004207.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gb|EDN65792.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 124

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 64/97 (65%)

Query: 59  GGVIFREGEQANELFVIKSGYVRIQVGNKTMADLAPDTIFGEMALIDNEPRSATATALTD 118
           G +IF+EG+    ++ I  G V + V  K +  +    I GEMALID  PRSATA + TD
Sbjct: 19  GQIIFKEGDPGKVMYAIIEGEVEVVVNGKAVDIVKAGNILGEMALIDTSPRSATAISKTD 78

Query: 119 VELVPVSEKQFLFLVSQTPHFALKVMRTLAQRLRTMN 155
            ++VP+S + F FL+  TP+FAL+VMR +A+RLR MN
Sbjct: 79  CKVVPISRRHFTFLIQHTPNFALEVMRVMAERLRHMN 115


>ref|YP_001517306.1| cyclic nucleotide-binding protein [Acaryochloris marina MBIC11017]
 gb|ABW27990.1| cyclic nucleotide-binding protein, putative [Acaryochloris marina
           MBIC11017]
          Length = 118

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 65/99 (65%)

Query: 58  AGGVIFREGEQANELFVIKSGYVRIQVGNKTMADLAPDTIFGEMALIDNEPRSATATALT 117
           AG  +F EG+    ++V+ +G + IQV  + M    P  I GEMALI++  RSA A A T
Sbjct: 18  AGHTLFTEGDPGEYMYVVITGNLEIQVRGQVMETAVPGDILGEMALIEHGTRSAAAIART 77

Query: 118 DVELVPVSEKQFLFLVSQTPHFALKVMRTLAQRLRTMNK 156
           DV LVP+ +K+F FLV +TP+FAL VM+ LA RL  MNK
Sbjct: 78  DVTLVPIDQKRFTFLVQETPYFALHVMKVLADRLGKMNK 116


>ref|YP_003848363.1| putative transcriptional regulator, Crp/Fnr family [Gallionella
           capsiferriformans ES-2]
 gb|ADL56599.1| putative transcriptional regulator, Crp/Fnr family [Gallionella
           capsiferriformans ES-2]
          Length = 118

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 64/104 (61%)

Query: 49  NSIETRLVRAGGVIFREGEQANELFVIKSGYVRIQVGNKTMADLAPDTIFGEMALIDNEP 108
           +  E + + AG V+F+EGE    ++V+ SG   I V  + M    P  I GEMA+IDN  
Sbjct: 9   HETELKKLAAGEVLFKEGELGGVMYVLMSGATEIVVHGRIMETSEPGAILGEMAMIDNVA 68

Query: 109 RSATATALTDVELVPVSEKQFLFLVSQTPHFALKVMRTLAQRLR 152
            SAT  A +D   +P+ +K+F FL+ QTP+FAL VMR +A RLR
Sbjct: 69  HSATVIAKSDCTFLPIDQKRFNFLIQQTPNFALHVMRVMAGRLR 112


>gb|EGW61815.1| putative transcriptional regulator, Crp/Fnr family [Dechlorosoma
           suillum PS]
          Length = 121

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 65/103 (63%)

Query: 54  RLVRAGGVIFREGEQANELFVIKSGYVRIQVGNKTMADLAPDTIFGEMALIDNEPRSATA 113
           R + AG  +FR G+  + L+V+  G+ R+ VG + + ++    I GEM+L++  P SA+ 
Sbjct: 14  RRIAAGDFLFRAGDPGDALYVLLEGHARVLVGERAVDEVEAGAILGEMSLVERLPHSASV 73

Query: 114 TALTDVELVPVSEKQFLFLVSQTPHFALKVMRTLAQRLRTMNK 156
            A++D     + EK+F  L++QTPHFA +VMR +A RLR  N+
Sbjct: 74  LAVSDCTFAAIDEKRFHILIAQTPHFATEVMRIMAHRLRATNQ 116