BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0110.0001.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773691.1| hypothetical protein bll7051 [Bradyrhizobium ja... 423 e-116 ref|YP_001207808.1| hypothetical protein BRADO5934 [Bradyrhizobi... 422 e-116 ref|YP_001237960.1| hypothetical protein BBta_1851 [Bradyrhizobi... 417 e-115 ref|YP_576431.1| hypothetical protein Nham_1124 [Nitrobacter ham... 402 e-110 ref|ZP_01046254.1| hypothetical protein NB311A_05223 [Nitrobacte... 398 e-109 >ref|NP_773691.1| hypothetical protein bll7051 [Bradyrhizobium japonicum USDA 110] dbj|BAC52316.1| bll7051 [Bradyrhizobium japonicum USDA 110] Length = 541 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 224/317 (70%), Positives = 244/317 (76%), Gaps = 38/317 (11%) Query: 1 VPSPSPEFDRLA-----RAGNG------------------------------EREPKKPP 25 VPSPSPEFDRL RAG G +R+ KKP Sbjct: 225 VPSPSPEFDRLEPSLENRAGEGDAPYSYDESVEEAERYAPRQPSGRPHIPVLDRDAKKPK 284 Query: 26 RVGSMFPFKTAIVIGILLILVGTGILFRQQAMTLVSSLLKSSAP--VEAPKDAASTPASK 83 R S+FPFK+AI +GI+LILVG GIL+ + + VS L KSS VEAPKDA+ + Sbjct: 285 RARSVFPFKSAIAVGIVLILVGAGILWGKPLLQTVSGLFKSSPTQVVEAPKDASQPQSKP 344 Query: 84 KITDRVGQPS-SGETVAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTEQVKGSGNQKPDIA 142 KI DRVGQPS S + VAPVAQ+VVLYDEDPSDPKGKQYVGSVVWR E +K SGNQK D+A Sbjct: 345 KIPDRVGQPSASDQPVAPVAQKVVLYDEDPSDPKGKQYVGSVVWRLEPIKASGNQKADVA 404 Query: 143 VRADIDIPDRKFKMTMSFRRNTDSSLPASHTAELTFILPQDFANGGVGNVPGILMKSNEQ 202 VRADI+IPDRKFKMTMSFRRNTDSSLPASHTAELTFILPQDF G V NVPGILMKSNEQ Sbjct: 405 VRADIEIPDRKFKMTMSFRRNTDSSLPASHTAELTFILPQDFPGGSVSNVPGILMKSNEQ 464 Query: 203 ARGTPLAGLAVKVTDGFFLVGLSNVDADRSRNLQLLKERSWFDVPLVYTNQRRAIIAIEK 262 ARGTPLAGLAVKVTDGFFLVGLSNVDADR+RN+QLLKERSWFDVPLVY NQRRAIIAIEK Sbjct: 465 ARGTPLAGLAVKVTDGFFLVGLSNVDADRARNVQLLKERSWFDVPLVYANQRRAIIAIEK 524 Query: 263 GAPGERAFNEAFAAWGE 279 GAPGERAFN+AFA WG+ Sbjct: 525 GAPGERAFNDAFAQWGD 541 >ref|YP_001207808.1| hypothetical protein BRADO5934 [Bradyrhizobium sp. ORS 278] emb|CAL79593.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 546 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/269 (78%), Positives = 235/269 (87%), Gaps = 2/269 (0%) Query: 12 ARAGNGEREPKKPP-RVGSMFPFKTAIVIGILLILVGTGILFRQQAMTLVSSLLKSSAPV 70 +RAG GERE KK R GS FPFK AI GI+LILVG GIL+ + + VS L KS++ V Sbjct: 279 SRAG-GEREAKKKSERSGSTFPFKAAIAAGIVLILVGAGILWGRPLVGAVSGLFKSNSTV 337 Query: 71 EAPKDAASTPASKKITDRVGQPSSGETVAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTEQ 130 EAPKD A+ + KITDRVGQ S + +APVAQ+VVLYDEDP+DPKGKQY+GSVVWRTEQ Sbjct: 338 EAPKDTAAPLSKPKITDRVGQSPSSDQIAPVAQKVVLYDEDPADPKGKQYLGSVVWRTEQ 397 Query: 131 VKGSGNQKPDIAVRADIDIPDRKFKMTMSFRRNTDSSLPASHTAELTFILPQDFANGGVG 190 +K +G QK DIAVRADI+IPDRKFKMTMSFRRNTD+SLPASHTAELTFILPQ+F GGVG Sbjct: 398 IKATGTQKADIAVRADIEIPDRKFKMTMSFRRNTDTSLPASHTAELTFILPQNFDGGGVG 457 Query: 191 NVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRSRNLQLLKERSWFDVPLVY 250 NVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADR+RN+QLLKERSWFDVPLVY Sbjct: 458 NVPGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRTRNVQLLKERSWFDVPLVY 517 Query: 251 TNQRRAIIAIEKGAPGERAFNEAFAAWGE 279 +NQRRAIIAIEKGAPGERAFN+AFA WG+ Sbjct: 518 SNQRRAIIAIEKGAPGERAFNDAFAVWGD 546 >ref|YP_001237960.1| hypothetical protein BBta_1851 [Bradyrhizobium sp. BTAi1] gb|ABQ34054.1| hypothetical protein BBta_1851 [Bradyrhizobium sp. BTAi1] Length = 546 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/267 (76%), Positives = 228/267 (85%) Query: 13 RAGNGEREPKKPPRVGSMFPFKTAIVIGILLILVGTGILFRQQAMTLVSSLLKSSAPVEA 72 RAG KK R GS FPFK AI GI+LIL+G GIL+ + ++ V++L KSS+ VE Sbjct: 280 RAGAEREGKKKSERSGSTFPFKAAIGAGIVLILIGAGILWGRPLVSAVTNLFKSSSTVEV 339 Query: 73 PKDAASTPASKKITDRVGQPSSGETVAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTEQVK 132 PKD + KITDRVGQ S + +APVAQRVVLYDEDP DPKGKQY+GSVVWRTEQ+K Sbjct: 340 PKDNGAPLTKPKITDRVGQAPSSDQIAPVAQRVVLYDEDPGDPKGKQYIGSVVWRTEQIK 399 Query: 133 GSGNQKPDIAVRADIDIPDRKFKMTMSFRRNTDSSLPASHTAELTFILPQDFANGGVGNV 192 +G QK DIAVRADI+IPDRKFKMTMSFRRNTD+SLPASHTAELTFILPQDF+ GGVGNV Sbjct: 400 ATGTQKADIAVRADIEIPDRKFKMTMSFRRNTDTSLPASHTAELTFILPQDFSGGGVGNV 459 Query: 193 PGILMKSNEQARGTPLAGLAVKVTDGFFLVGLSNVDADRSRNLQLLKERSWFDVPLVYTN 252 PGILMKSNEQ+RGTPLAGLAVKVTDGFFLVGLSNVDADR+RN+QLLKERSWFDVPLVYTN Sbjct: 460 PGILMKSNEQSRGTPLAGLAVKVTDGFFLVGLSNVDADRTRNVQLLKERSWFDVPLVYTN 519 Query: 253 QRRAIIAIEKGAPGERAFNEAFAAWGE 279 QRRAIIAIEKGAPGERAFN+AF WG+ Sbjct: 520 QRRAIIAIEKGAPGERAFNDAFTLWGD 546 >ref|YP_576431.1| hypothetical protein Nham_1124 [Nitrobacter hamburgensis X14] gb|ABE61971.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 518 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/314 (68%), Positives = 237/314 (75%), Gaps = 36/314 (11%) Query: 1 VPSPSPEFDRLARA---------------GNGEREPKKPPRVGSMFP------------- 32 VPSPSPEFDRL + +GE +PP + +P Sbjct: 206 VPSPSPEFDRLEPSLEDRGAFEGAYPYDQSSGEAANDQPPPLPRSWPQPGRDKPKRVFGG 265 Query: 33 -----FKTAIVIGILLILVGTGILFRQQAMTLVSSLLKSS--APVEAPKDAASTPASKKI 85 FK+AI +G++LIL G GI++ +A++ V L SS E PK A P KI Sbjct: 266 GFGFPFKSAIAVGLVLILAGAGIVWGPKAVSTVRGLFSSSPDQTSEIPKPATPGP-RPKI 324 Query: 86 TDRVGQPSSGETVAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTEQVKGSGNQKPDIAVRA 145 TDRVGQP S ETVAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTE+VKG + P+IAVRA Sbjct: 325 TDRVGQPPSSETVAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTEEVKGVAGKTPEIAVRA 384 Query: 146 DIDIPDRKFKMTMSFRRNTDSSLPASHTAELTFILPQDFANGGVGNVPGILMKSNEQARG 205 DIDIP+R+FKMTMSFRRNTD+SLPASHTAELTF+LPQDF GGV NVPGILMKSNEQARG Sbjct: 385 DIDIPERQFKMTMSFRRNTDTSLPASHTAELTFVLPQDFEGGGVSNVPGILMKSNEQARG 444 Query: 206 TPLAGLAVKVTDGFFLVGLSNVDADRSRNLQLLKERSWFDVPLVYTNQRRAIIAIEKGAP 265 TPLAGLAVKVTDGFFLVGLSNV+ADRSRNLQLLKERSWFDVPLVYTNQRRAIIAIEKGAP Sbjct: 445 TPLAGLAVKVTDGFFLVGLSNVEADRSRNLQLLKERSWFDVPLVYTNQRRAIIAIEKGAP 504 Query: 266 GERAFNEAFAAWGE 279 GERAFNEAF AWGE Sbjct: 505 GERAFNEAFTAWGE 518 >ref|ZP_01046254.1| hypothetical protein NB311A_05223 [Nitrobacter sp. Nb-311A] gb|EAQ35791.1| hypothetical protein NB311A_05223 [Nitrobacter sp. Nb-311A] Length = 510 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/311 (67%), Positives = 233/311 (74%), Gaps = 32/311 (10%) Query: 1 VPSPSPEFDRLA-----RAG-NGEREPKKPPRVGSM------------------------ 30 V S SPEFDRL R G G P +PP G++ Sbjct: 200 VRSQSPEFDRLEPSLEDRGGFEGAYPPHEPPFGGNVDDQPPPLPRSWPQPGRDRPKLSFG 259 Query: 31 --FPFKTAIVIGILLILVGTGILFRQQAMTLVSSLLKSSAPVEAPKDAASTPASKKITDR 88 FP K+AIV+G++LIL G GI++ A++ V L SS A+ KI DR Sbjct: 260 GGFPLKSAIVVGLVLILAGAGIVWGPNAVSTVRGLFDSSHKTAELAKPATPGLKPKIADR 319 Query: 89 VGQPSSGETVAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTEQVKGSGNQKPDIAVRADID 148 VGQP+S ET+APVAQRVVLYDEDPSDPKGKQYVGSVVWRTE+VKG+ KP+IAVRA+ID Sbjct: 320 VGQPASSETIAPVAQRVVLYDEDPSDPKGKQYVGSVVWRTEEVKGAAGNKPEIAVRAEID 379 Query: 149 IPDRKFKMTMSFRRNTDSSLPASHTAELTFILPQDFANGGVGNVPGILMKSNEQARGTPL 208 IP+RKFKMTMSFRRNTD+SLPASHTAELTF+LPQDF GGV NVPGILMKSNEQ+RGTPL Sbjct: 380 IPERKFKMTMSFRRNTDTSLPASHTAELTFVLPQDFDGGGVSNVPGILMKSNEQSRGTPL 439 Query: 209 AGLAVKVTDGFFLVGLSNVDADRSRNLQLLKERSWFDVPLVYTNQRRAIIAIEKGAPGER 268 AGLAVKVTDGFFLVGLSNV++DR RNLQLLKERSWFDVPLVYTNQRRAIIAIEKGAPGER Sbjct: 440 AGLAVKVTDGFFLVGLSNVESDRVRNLQLLKERSWFDVPLVYTNQRRAIIAIEKGAPGER 499 Query: 269 AFNEAFAAWGE 279 AFNEAF AWGE Sbjct: 500 AFNEAFTAWGE 510