BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0037.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772930.1| two-component response regulator [Bradyrhizobiu... 209 2e-52 ref|ZP_07027184.1| transcriptional regulator, LuxR family [Afipi... 142 3e-32 ref|YP_001312799.1| two component LuxR family transcriptional re... 140 2e-31 ref|YP_004556666.1| LuxR family two component transcriptional re... 138 7e-31 ref|NP_436618.1| response regulator [Sinorhizobium meliloti 1021... 136 2e-30 >ref|NP_772930.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51555.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 274 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 112/210 (53%), Positives = 139/210 (66%), Gaps = 1/210 (0%) Query: 6 VVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMPDIFGQ 65 VVIA R+PVVL GL+ +L A DF +VA CND ASC +A++ LAPD+AI+D +MP + Sbjct: 52 VVIADRHPVVLEGLSKVLGAVADFNIVASCNDAASCIEAIRRLAPDMAIVDPAMPGLAAA 111 Query: 66 AMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADGQK 125 +L NS LVF AS ED +L A C ++L + + E L+++LR +A+G Sbjct: 112 KILSTVNSENRSTHLVFFVAS-EDCELVFSATPVTCSIILRDTDSEALVESLRHIANGHN 170 Query: 126 TLPSPSYEEAIPYAQTTIPEKYLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTIKVH 185 LPS E Q T E L LT+RERQIMRLVSEGLSNKEIGRRL DGTIKVH Sbjct: 171 VLPSTPSESIASREQGTNSESGLTTLTERERQIMRLVSEGLSNKEIGRRLNTTDGTIKVH 230 Query: 186 LHHIFRKLEISNRTVLATLAVSYSGPAGSP 215 LH+IF+KLEISNRTVLA LA+S A +P Sbjct: 231 LHNIFQKLEISNRTVLAALAISQHDRATAP 260 >ref|ZP_07027184.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gb|EFI50940.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 216 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 127/222 (57%), Gaps = 20/222 (9%) Query: 1 MHFSRVVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMP 60 M RVVIA+R P+ L LL AE +F+VVA C I+ C ++ +PDIAI++ M Sbjct: 1 MRCVRVVIANRNPLTSQNLADLLHAEGNFEVVASCATISECVGLVRARSPDIAIIERLMS 60 Query: 61 D-IFGQAMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEP---ETLLQT 116 I Q +L S R+VFLAAS E D++ V+ S E P T+ + Sbjct: 61 SKIPEQDILAAVASACFFTRVVFLAASSEPDDIS---------VITSYEWPLKGSTVARC 111 Query: 117 LRQVADGQ---KTLPSP---SYEEAIPYAQTTIPEKYLAVLTDRERQIMRLVSEGLSNKE 170 L Q+ G + P+P S + P A+ P + L+ LT+RER+IM +SEG+SNKE Sbjct: 112 LAQIVIGHSPANSTPNPTSASRHQNKP-ARVETPGQPLSYLTEREREIMHEISEGISNKE 170 Query: 171 IGRRLKVADGTIKVHLHHIFRKLEISNRTVLATLAVSYSGPA 212 RRL +++GTIK+HLHHI+ KL I NR L +A ++SGPA Sbjct: 171 AARRLNISEGTIKLHLHHIYHKLSIKNRAELVAMATTHSGPA 212 >ref|YP_001312799.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gb|ABR62866.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 212 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 1/204 (0%) Query: 6 VVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMPDIFGQ 65 V++ +P++L GL ++ A DF +V + L PDIA+LD++MP + G Sbjct: 5 VLLVDDHPLLLRGLQDIIAAAPDFTIVGATASGVEAISLISRLQPDIAVLDVAMPGMGGL 64 Query: 66 AMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADGQK 125 +L R++FL A++ +A G G+LL E PE LL +RQVA G K Sbjct: 65 EILRALRGTHRFTRVIFLTATISGPQVAEALKMGLSGLLLKEYAPEALLDCMRQVAMGGK 124 Query: 126 TLPSPSYEEAIPYAQTTIPEKYLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTIKVH 185 LP+ E+A ++ E++ ++LT RER+I L+ GLSN+ I RL ++GTI +H Sbjct: 125 WLPADLMEKASQVSEDVTLERF-SLLTPREREIAALICGGLSNRMIASRLGTSEGTIGIH 183 Query: 186 LHHIFRKLEISNRTVLATLAVSYS 209 LH+IFRKL+ISNR LA L V Y+ Sbjct: 184 LHNIFRKLDISNRATLAALHVQYT 207 >ref|YP_004556666.1| LuxR family two component transcriptional regulator [Sinorhizobium meliloti AK83] gb|AEG08865.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gb|AEG55786.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 211 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 115/206 (55%), Gaps = 1/206 (0%) Query: 6 VVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMPDIFGQ 65 V++ +P++L GL ++ A DF VV + L PDIA+LD++MP + G Sbjct: 4 VLLVDDHPLLLRGLQDIIAAAPDFDVVGATASGVEAISLISRLQPDIAVLDVAMPGMGGL 63 Query: 66 AMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADGQK 125 +L R++FL A++ +A G G+LL E PE LL +RQVA G K Sbjct: 64 EILRAIRGTRRLTRVIFLTATISGPQIAEALKMGLSGLLLKEYAPEALLDCMRQVAMGGK 123 Query: 126 TLPSPSYEEAIPYAQTTIPEKYLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTIKVH 185 LP+ A + E++ ++LT RER+I L+ GLSN+ I RL ++GT+ +H Sbjct: 124 WLPADLMANASQVSNDAPLERF-SLLTPREREISALICGGLSNRMIASRLGTSEGTVGIH 182 Query: 186 LHHIFRKLEISNRTVLATLAVSYSGP 211 LH+IFRKL+ISNR LA L V Y+ P Sbjct: 183 LHNIFRKLDISNRATLAALHVQYTNP 208 >ref|NP_436618.1| response regulator [Sinorhizobium meliloti 1021] emb|CAC48478.1| probable response regulator [Sinorhizobium meliloti 1021] Length = 211 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 6 VVIASRYPVVLLGLNCLLEAERDFKVVARCNDIASCFKAMQTLAPDIAILDMSMPDIFGQ 65 V++ +P++L GL ++ A DF VV + L PDIA+LD++MP + G Sbjct: 4 VLLVDDHPLLLRGLQDIIAAAPDFDVVGATASGVEAISLISGLQPDIAVLDVAMPGMGGL 63 Query: 66 AMLEVANSGALGVRLVFLAASVEDRDLAMLAAAGACGVLLSEEEPETLLQTLRQVADGQK 125 +L + R++FL A++ +A G G+LL E PE LL +R+VA G K Sbjct: 64 EILRAIRNPRRLTRVIFLTATISGPQIAEALKMGLSGLLLKEYAPEALLDCMRRVAMGGK 123 Query: 126 TLPSPSYEEAIPYAQTTIPEKYLAVLTDRERQIMRLVSEGLSNKEIGRRLKVADGTIKVH 185 LP+ A + E++ ++LT RER+I L+ GLSN+ I RL ++GT+ +H Sbjct: 124 WLPADLMANASQVSNDAPLERF-SLLTPREREISALICGGLSNRMIASRLGTSEGTVGIH 182 Query: 186 LHHIFRKLEISNRTVLATLAVSYSGP 211 LH+IFRKL+ISNR LA L V Y+ P Sbjct: 183 LHNIFRKLDISNRATLAALHVQYTNP 208