BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0036.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772931.1| transcriptional regulator [Bradyrhizobium japon... 266 3e-69 ref|YP_578215.1| two component LuxR family transcriptional regul... 241 1e-61 ref|ZP_07027185.1| transcriptional regulator, LuxR family [Afipi... 158 1e-36 ref|YP_004554358.1| LuxR family two component transcriptional re... 126 6e-27 ref|YP_003546930.1| CheY-like response regulator [Sphingobium ja... 123 5e-26 >ref|NP_772931.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51556.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 150/307 (48%), Positives = 192/307 (62%), Gaps = 10/307 (3%) Query: 1 MRRRYPFAIALVGENSLRKEGLARILNSENF-VLASIDDADDWPSDEALQNVPASQALFL 59 MRRR L+G+N L +EG+ARIL++ NF + S ++ PS LQ + +FL Sbjct: 11 MRRRQSCETVLIGKNVLIREGIARILHTANFHIPVSASSPEELPS--TLQT---EKLMFL 65 Query: 60 IVHSGDDFRSTVGQIDSFKRRCADARVAVVADHFHLSDLVAAFRAGATGYFIDVMNCDAF 119 IVH+GD F + QI K R DAR+A+V+D++ DL +AFRAGA GYF++V +CDAF Sbjct: 66 IVHTGDGFNVAIEQIGFVKDRYPDARIAIVSDNYRPVDLASAFRAGANGYFVNVNSCDAF 125 Query: 120 IKSIELVMMGGTVFPPAFLTSALDSEKRDVDDAPVPNDDDRAVATADDTLAQQLSPREVS 179 IKS+ELV+MG TVFPPAFL+ ALD+ + + P +A ADDT+ QLSPRE + Sbjct: 126 IKSVELVIMGETVFPPAFLSFALDAGRDHEPETAEPGRRQAILAAADDTILPQLSPREKA 185 Query: 180 IVQCLIEGDSNKCIARKIKIAEATVKVHIKAILRKIRVQNRTQAAIWGLNHRSAAWSRNS 239 I+ CLIEGDSNKC+ARKI IAEATVKVH+KAILRKIRVQNRTQAAIWG+NH S N Sbjct: 186 ILSCLIEGDSNKCVARKINIAEATVKVHVKAILRKIRVQNRTQAAIWGMNHESLVRPAN- 244 Query: 240 SSAHQVVDVTERLLPPGREISKIARAGRPVPLGAIDHAENYFEASLANGHTRKDMSSKVD 299 A VD + P IS++ + P PL N+ S +G RK + Sbjct: 245 DRAPSTVDAGRGIAKPIEMISEMEQLNEPAPLVP---RSNHVVVSRIDGLLRKGVDPGTR 301 Query: 300 GAIRLRK 306 A R K Sbjct: 302 AAARFYK 308 >ref|YP_578215.1| two component LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE63755.1| two component transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 263 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 136/267 (50%), Positives = 166/267 (62%), Gaps = 7/267 (2%) Query: 1 MRRRYPFAIALVGENSLRKEGLARILNSENF-VLASIDDADDWPSDEALQNVPASQALFL 59 MRR F L+G+ L +EG+ARIL +ENF V AS+ DE Q LFL Sbjct: 1 MRRHQTFETILIGKGILIREGIARILRAENFRVRASVSS-----PDELTGGFRGPQLLFL 55 Query: 60 IVHSGDDFRSTVGQIDSFKRRCADARVAVVADHFHLSDLVAAFRAGATGYFIDVMNCDAF 119 IVH+ DDF V QI+ + + R+ VVADH+ ++ F+ GA GY + M+CDAF Sbjct: 56 IVHTSDDFDLAVEQINLVRNQYPSGRIVVVADHYKSTEPDLVFQVGAAGYLVSTMSCDAF 115 Query: 120 IKSIELVMMGGTVFPPAFLTSALDSEKRDVDDAPVPNDDDRAVATADDTLAQQLSPREVS 179 +KSIELVMMG TVFPPAFL S+ D++ A V +D VA D T A QLSPRE++ Sbjct: 116 VKSIELVMMGETVFPPAFLASSPDTKSEPRRKAAVSGEDAILVAREDAT-APQLSPRELA 174 Query: 180 IVQCLIEGDSNKCIARKIKIAEATVKVHIKAILRKIRVQNRTQAAIWGLNHRSAAWSRNS 239 I++CLI G+SNKCIARKI IAEATVKVH+KAILRKIR QNRTQAAIWG+NH A N Sbjct: 175 ILRCLISGNSNKCIARKIDIAEATVKVHVKAILRKIRAQNRTQAAIWGMNHPLLAQPING 234 Query: 240 SSAHQVVDVTERLLPPGREISKIARAG 266 + D E L IS I R G Sbjct: 235 IPHLPIADANEPLSSSVAVISAIKRIG 261 >ref|ZP_07027185.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gb|EFI50941.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 262 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/264 (39%), Positives = 147/264 (55%), Gaps = 18/264 (6%) Query: 8 AIALVGENSLRKEGLARILNSENF-VLASIDDADDWPSDEALQNVPASQALFLIVHSGDD 66 A +VG N+L +EGL+RIL + +F VL +I DD AL + I+ +GD Sbjct: 3 ATVIVGSNNLFREGLSRILGAADFNVLDAITGVDD----AALDAMVVHDCALFILDAGDG 58 Query: 67 FRSTVGQIDSFKRRCADARVAVVADHFHLSDLVAAFRAGATGYFIDVMNCDAFIKSIELV 126 + + QI K R RV V+ + L ++ + +RAG + Y +V AFIK +ELV Sbjct: 59 SNTVLDQIKLIKARNPMWRVVVLDNSNQLINIASVYRAGVSAYLANVATSVAFIKFLELV 118 Query: 127 MMGGTVFPPAFLTSALDSEKRD------VDDAPVPND-DDRAVATADDTLAQQLSPREVS 179 M+G T+ P AFL LD D V+ +D + + +A QLS RE Sbjct: 119 MLGETILPAAFLPFVLDQASDDNGASSHVNGNECKSDLEQQLIAAVGGAPIPQLSLREKV 178 Query: 180 IVQCLIEGDSNKCIARKIKIAEATVKVHIKAILRKIRVQNRTQAAIWGLNHR-SAAWSRN 238 +++C+IEG SNK IARKI I+EATVKVH+K+ILRKIRV +RTQAAIWG+N S N Sbjct: 179 VLRCIIEGGSNKMIARKIAISEATVKVHVKSILRKIRVHSRTQAAIWGMNSGFSLCQIEN 238 Query: 239 SSSAHQVVDVTER-----LLPPGR 257 ++ + +V ++ LPP R Sbjct: 239 ATVSPSIVAHSQEPGGVAALPPAR 262 >ref|YP_004554358.1| LuxR family two component transcriptional regulator [Sphingobium chlorophenolicum L-1] gb|AEG49852.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 250 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 45/242 (18%) Query: 5 YPFAIALVGENSLRKEGLARILNSENFVLASIDDADDWPSDEALQNVPASQ-----ALFL 59 YP + L+ N++ +EGL+RIL +F + + ALQ V + AL L Sbjct: 3 YPVNVRLLCGNAIVREGLSRILMERDFRVTQYPNVST-----ALQQVEVPEEDVGPALLL 57 Query: 60 IVHSGDDFRST--VGQIDSFKRRCADARVAVVADHFHLSDLVAAFRAGATGYFIDVMNCD 117 I DD V + ++R + + +++D F ++ AFR GA Y + ++CD Sbjct: 58 I----DDGTEAMDVETLSVLQKRFPCSYLVLLSDRFDFQIMLKAFRLGALAYIVKEISCD 113 Query: 118 AFIKSIELVMMGGTVFPPAF---------LTSALDSEKRDVDDAPVPNDDDRAVATADDT 168 + ++ LV MG V PP LT AL+ E R VD Sbjct: 114 RLVATLRLVAMGERVLPPQLADELQSRPSLTDALEVE-RPVD------------------ 154 Query: 169 LAQQLSPREVSIVQCLIEGDSNKCIARKIKIAEATVKVHIKAILRKIRVQNRTQAAIWGL 228 A LS RE+ I++ LI G NK I++++ I+EATVKVH+KA+LRK+RV+NRTQAAIW Sbjct: 155 -AACLSDRELEILRWLIMGCPNKVISKRMNISEATVKVHVKAVLRKLRVKNRTQAAIWAA 213 Query: 229 NH 230 NH Sbjct: 214 NH 215 >ref|YP_003546930.1| CheY-like response regulator [Sphingobium japonicum UT26S] dbj|BAI98318.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 250 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 23/231 (9%) Query: 5 YPFAIALVGENSLRKEGLARILNSENFVLASIDDADDWPS-DEALQNVPASQ----ALFL 59 YP + L+ N++ +EGL+RIL +F +P+ ALQ V + L Sbjct: 3 YPVNVRLLCGNAIVREGLSRILIERDF------RVTQYPNIAAALQQVEVPEEDTGPSLL 56 Query: 60 IVHSGDDFRSTVGQIDSFKRRCADARVAVVADHFHLSDLVAAFRAGATGYFIDVMNCDAF 119 ++ G + + + ++R + + +++D F ++ AFR GA Y + ++CD Sbjct: 57 LIDDGTEAMD-IETLSVLQKRFPCSYLVLLSDRFDFQIMLKAFRLGALAYIVKEISCDRL 115 Query: 120 IKSIELVMMGGTVFPPAFLTSALDSEKRDVDDAPVPNDDDRAVATADDTLAQQLSPREVS 179 + ++ LV MG V PP L L S D V D A LS RE+ Sbjct: 116 VATLRLVAMGERVLPPQ-LADELQSRPSLTDALEVERPVDAAC----------LSDRELE 164 Query: 180 IVQCLIEGDSNKCIARKIKIAEATVKVHIKAILRKIRVQNRTQAAIWGLNH 230 I++ LI G NK I++++ I+EATVKVH+KA+LRK+RV+NRTQAAIW NH Sbjct: 165 ILRWLIMGCPNKVISKRMDISEATVKVHVKAVLRKLRVKNRTQAAIWAANH 215